Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 3.8e-134 481.5 237 100.0
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 5.7e-98 361.3 237 70.5
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 1.8e-75 286.6 234 62.8
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 3.9e-75 285.4 231 59.7
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 9.7e-74 280.8 237 57.0
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 2.8e-73 279.3 237 59.1
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.1e-72 275.8 240 56.7
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 4.5e-71 271.9 230 57.8
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 7.7e-71 271.2 232 56.5
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 1.7e-70 270.0 232 56.0
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 3.6e-68 262.3 230 54.8
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 3.6e-68 262.3 230 54.8
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 8.0e-68 261.2 240 55.4
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 8.0e-68 261.2 230 56.5
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.0e-67 260.8 240 55.0
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.4e-67 260.4 233 56.2
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 1.2e-66 257.3 231 55.0
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.5e-66 256.9 233 54.1
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 1.5e-66 256.9 240 54.6
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 2.6e-66 256.1 232 54.7
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 5.7e-66 255.0 233 53.6
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 2.8e-65 252.7 240 54.2
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 2.8e-65 252.7 236 55.1
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 3.7e-65 252.3 240 54.6
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 6.3e-65 251.5 236 55.1
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 2.4e-64 249.6 231 55.4
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.4e-64 249.6 236 53.8
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.4e-64 249.6 236 53.8
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 4.1e-64 248.8 240 54.6
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.0e-63 246.5 234 53.4
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 4.5e-63 245.4 232 50.0
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 1.0e-62 244.2 235 52.8
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 2.9e-62 242.7 239 52.3
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.9e-62 242.7 236 53.4
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 2.9e-62 242.7 229 52.0
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.9e-62 242.7 240 52.5
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 3.8e-62 242.3 232 53.4
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 5.0e-62 241.9 236 50.4
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 5.0e-62 241.9 238 49.6
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 6.5e-62 241.5 232 53.4
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 6.5e-62 241.5 227 52.9
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 8.5e-62 241.1 230 52.6
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.9e-61 240.0 230 49.1
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 3.2e-61 239.2 233 52.4
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 4.2e-61 238.8 223 54.7
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 1.6e-60 236.9 235 47.2
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 2.1e-60 236.5 232 51.3
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 8.0e-60 234.6 230 50.4
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.4e-59 233.8 230 49.1
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 2.3e-59 233.0 240 47.5
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.3e-59 233.0 230 50.4
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 3.0e-59 232.6 199 55.3
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 3.0e-59 232.6 234 48.3
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 5.2e-59 231.9 230 50.0
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.6e-58 229.6 234 47.9
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.7e-58 228.4 229 49.3
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.7e-58 228.4 229 49.3
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 5.7e-58 228.4 230 48.7
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 7.5e-58 228.0 229 49.3
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 7.5e-58 228.0 229 49.3
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.7e-57 226.9 229 48.9
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 1.7e-57 226.9 233 51.1
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 6.3e-57 224.9 233 48.9
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.1e-56 224.2 232 48.7
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 1.4e-56 223.8 237 46.0
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 3.1e-56 222.6 217 53.5
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 5.4e-56 221.9 231 45.5
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 7.0e-56 221.5 242 48.8
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.6e-55 220.3 233 48.5
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 1.6e-55 220.3 239 48.5
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 4.5e-55 218.8 227 48.9
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 5.9e-55 218.4 234 46.2
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 5.9e-55 218.4 199 50.3
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.9e-54 216.1 237 45.1
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 3.8e-54 215.7 232 48.7
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 5.0e-54 215.3 233 47.2
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 5.0e-54 215.3 215 50.2
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 3.3e-53 212.6 236 48.3
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 4.2e-53 212.2 227 48.5
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 7.2e-53 211.5 240 45.8
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 9.5e-53 211.1 218 46.8
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 9.5e-53 211.1 236 47.0
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 9.5e-53 211.1 235 46.8
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 1.2e-52 210.7 240 45.8
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 1.2e-52 210.7 230 46.5
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.2e-52 210.7 189 56.6
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 2.1e-52 209.9 234 47.9
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 2.8e-52 209.5 227 47.6
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 8.0e-52 208.0 237 44.3
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.4e-51 207.2 239 43.9
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.8e-51 206.8 231 46.8
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 2.3e-51 206.5 228 46.1
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 3.0e-51 206.1 227 47.1
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 1.2e-50 204.1 203 51.7
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 2.0e-50 203.4 235 45.5
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 2.6e-50 203.0 235 46.0
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 3.4e-50 202.6 241 44.8
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 4.4e-50 202.2 234 45.3
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 7.5e-50 201.4 195 51.3
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.3e-49 200.7 233 44.6
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 1.3e-49 200.7 231 44.2
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 2.2e-49 199.9 241 41.9
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 6.3e-49 198.4 233 42.9
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 2.4e-48 196.4 236 46.2
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 3.2e-48 196.1 225 43.6
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 3.2e-48 196.1 234 42.7
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 5.4e-48 195.3 233 42.1
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 1.6e-47 193.7 239 44.4
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.6e-47 193.7 154 59.7
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 3.5e-47 192.6 232 45.3
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 4.5e-47 192.2 233 42.5
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 4.5e-47 192.2 233 42.5
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 1.3e-46 190.7 235 43.4
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 1.7e-46 190.3 233 42.1
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 2.3e-46 189.9 233 42.1
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 2.3e-46 189.9 233 42.1
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 2.3e-46 189.9 231 44.2
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 2.9e-46 189.5 228 43.0
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 5.0e-46 188.7 234 43.6
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 1.1e-45 187.6 226 42.5
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 4.3e-45 185.7 211 42.7
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 2.1e-44 183.3 214 42.5
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 2.1e-44 183.3 227 39.6
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 2.8e-44 183.0 240 45.8
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 1.8e-43 180.3 215 40.0
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 4.0e-43 179.1 211 43.1
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 6.8e-43 178.3 232 35.3
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 8.9e-43 177.9 211 43.6
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 8.9e-43 177.9 152 54.6
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.5e-42 177.2 184 50.5
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 2.9e-41 172.9 147 55.1
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.9e-41 172.2 228 43.4
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 8.3e-41 171.4 232 42.7
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 2.4e-40 169.9 184 46.2
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 2.4e-40 169.9 227 39.6
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 4.1e-40 169.1 154 50.6
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 7.0e-40 168.3 151 49.7
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 2.0e-39 166.8 229 41.5
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 3.0e-38 162.9 234 38.9
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 5.0e-38 162.2 235 40.9
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 6.6e-38 161.8 165 47.3
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 3.3e-37 159.5 217 40.6
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 5.6e-37 158.7 92 79.3
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 9.5e-37 157.9 232 41.8
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 1.2e-36 157.5 215 38.1
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 2.8e-36 156.4 233 40.8
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 1.8e-35 153.7 218 38.5
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 2.3e-35 153.3 236 40.3
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 2.3e-35 153.3 236 40.3
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 5.2e-35 152.1 194 40.2
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 2.6e-34 149.8 165 47.9
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 5.8e-34 148.7 141 49.6
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 7.5e-34 148.3 175 40.0
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 1.7e-33 147.1 227 33.5
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 9.2e-32 141.4 189 38.6
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 3.0e-30 136.3 122 54.1
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 5.1e-30 135.6 113 58.4
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 1.1e-29 134.4 115 54.8
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.8e-28 129.8 204 39.7
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 5.4e-24 115.5 137 42.3
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.7e-22 110.5 89 53.9
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.6e-22 108.6 196 37.2
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 1.9e-21 107.1 80 63.8
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 1.9e-21 107.1 88 61.4
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 1.2e-18 97.8 91 50.5
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 6.4e-17 92.0 111 45.9
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.4e-17 91.7 126 42.1
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.4e-16 90.9 218 31.2
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 5.4e-16 89.0 131 40.5
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 2.7e-15 86.7 147 31.3
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 1.3e-14 84.3 77 49.4
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.7e-14 84.0 118 39.0
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 1.3e-12 77.8 78 46.2
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 1.3e-12 77.8 64 53.1
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 6.2e-12 75.5 68 58.8
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 2.0e-10 70.5 113 32.7
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 7.6e-10 68.6 91 35.2
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 1.3e-06 57.8 92 43.5
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 3.0e-06 56.6 100 30.0


User provided reference genes

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