Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.3e-45 186.0 93 100.0
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.7e-45 185.7 92 100.0
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.7e-37 159.1 92 79.3
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 3.6e-24 114.8 92 56.5
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 1.8e-23 112.5 92 57.6
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 3.1e-23 111.7 91 54.9
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 8.9e-23 110.2 92 54.3
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 3.4e-22 108.2 92 55.4
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 3.4e-22 108.2 92 54.3
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 4.4e-22 107.8 92 51.1
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 4.4e-22 107.8 92 54.3
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 5.8e-22 107.5 92 55.4
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 7.6e-22 107.1 92 53.3
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 1.7e-21 105.9 92 52.2
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 2.2e-21 105.5 92 51.1
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 2.2e-21 105.5 92 51.1
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.7e-21 104.8 92 48.9
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 3.7e-21 104.8 92 51.1
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 4.9e-21 104.4 92 51.1
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 8.4e-21 103.6 92 47.8
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.4e-21 103.6 92 47.8
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.4e-21 103.6 92 47.8
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.4e-21 103.6 92 47.8
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 8.4e-21 103.6 92 50.0
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 8.4e-21 103.6 92 50.0
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 8.4e-21 103.6 92 51.1
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 8.4e-21 103.6 92 54.3
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.1e-20 103.2 89 50.6
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.1e-20 103.2 89 50.6
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.1e-20 103.2 89 50.6
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 1.1e-20 103.2 89 50.6
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 1.4e-20 102.8 92 50.0
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.4e-20 102.8 92 54.3
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 1.9e-20 102.4 92 47.8
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.9e-20 102.4 92 50.0
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 1.9e-20 102.4 92 47.8
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 1.9e-20 102.4 92 47.8
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 3.2e-20 101.7 92 50.0
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 3.2e-20 101.7 92 52.2
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 4.1e-20 101.3 92 50.0
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 4.1e-20 101.3 92 53.3
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 4.1e-20 101.3 89 50.6
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 5.4e-20 100.9 92 47.8
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 5.4e-20 100.9 92 47.8
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 5.4e-20 100.9 92 47.8
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 5.4e-20 100.9 92 50.0
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 5.4e-20 100.9 89 49.4
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 5.4e-20 100.9 92 48.9
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 9.2e-20 100.1 92 47.8
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 9.2e-20 100.1 92 48.9
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 9.2e-20 100.1 92 47.8
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 9.2e-20 100.1 92 47.8
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 1.2e-19 99.8 92 48.9
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 1.6e-19 99.4 92 46.7
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 2.1e-19 99.0 92 45.7
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 2.7e-19 98.6 92 47.8
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 2.7e-19 98.6 92 48.9
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.7e-19 98.6 92 48.9
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 2.7e-19 98.6 92 52.2
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.7e-19 98.6 92 46.7
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 3.5e-19 98.2 92 46.7
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 3.5e-19 98.2 92 46.7
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 4.6e-19 97.8 92 48.9
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 4.6e-19 97.8 92 51.1
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 4.6e-19 97.8 92 48.9
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 4.6e-19 97.8 92 44.6
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 4.6e-19 97.8 92 46.7
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 4.6e-19 97.8 92 46.7
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 4.6e-19 97.8 92 46.7
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 6.0e-19 97.4 92 47.8
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 6.0e-19 97.4 92 46.7
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 7.8e-19 97.1 91 49.5
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 1.0e-18 96.7 92 46.7
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 1.3e-18 96.3 92 46.7
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 1.7e-18 95.9 92 45.7
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 2.3e-18 95.5 92 47.8
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 3.0e-18 95.1 92 47.8
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 5.1e-18 94.4 92 46.7
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 5.1e-18 94.4 92 47.8
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 5.1e-18 94.4 92 50.0
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 6.6e-18 94.0 92 46.7
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 1.1e-17 93.2 92 46.7
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 3.3e-17 91.7 90 47.8
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 4.3e-17 91.3 88 45.5
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 4.3e-17 91.3 92 40.2
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 5.6e-17 90.9 92 43.5
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 7.3e-17 90.5 92 42.4
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 9.6e-17 90.1 92 43.5
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 1.2e-16 89.7 92 43.5
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 1.2e-16 89.7 92 44.6
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 1.2e-16 89.7 84 45.2
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 1.2e-16 89.7 92 43.5
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 1.6e-16 89.4 92 46.7
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 1.6e-16 89.4 92 42.4
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 2.1e-16 89.0 92 39.1
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 2.8e-16 88.6 92 43.5
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 4.7e-16 87.8 92 44.6
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 4.7e-16 87.8 92 41.3
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 4.7e-16 87.8 92 41.3
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 8.1e-16 87.0 91 44.0
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 2.4e-15 85.5 93 45.2
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 4.0e-15 84.7 93 41.9
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 6.8e-15 84.0 94 46.8
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 6.8e-15 84.0 93 41.9
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 1.2e-14 83.2 78 47.4
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 2.0e-14 82.4 93 41.9
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 2.0e-14 82.4 94 50.0
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 2.6e-14 82.0 92 43.5
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 2.6e-14 82.0 92 37.0
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 2.6e-14 82.0 92 42.4
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 5.8e-14 80.9 94 46.8
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 5.8e-14 80.9 94 46.8
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 7.6e-14 80.5 94 46.8
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 7.6e-14 80.5 94 46.8
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 7.6e-14 80.5 94 46.8
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 9.9e-14 80.1 92 40.2
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 1.3e-13 79.7 94 44.7
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 2.2e-13 79.0 93 45.2
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 2.2e-13 79.0 92 38.0
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 2.9e-13 78.6 92 40.2
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 6.4e-13 77.4 92 39.1
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 6.4e-13 77.4 94 42.6
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.1e-12 76.6 92 38.0
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 1.1e-12 76.6 93 38.7
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 1.4e-12 76.3 94 44.7
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 1.4e-12 76.3 94 38.3
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 1.4e-12 76.3 92 42.4
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 1.9e-12 75.9 93 44.1
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 2.4e-12 75.5 94 45.7
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 2.4e-12 75.5 94 38.3
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 3.2e-12 75.1 92 39.1
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 3.2e-12 75.1 94 43.6
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.2e-12 75.1 92 35.9
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 4.2e-12 74.7 92 39.1
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 4.2e-12 74.7 94 37.2
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 7.1e-12 73.9 92 34.8
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 7.1e-12 73.9 88 40.9
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 7.1e-12 73.9 87 43.7
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 9.3e-12 73.6 94 36.2
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 9.3e-12 73.6 92 39.1
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 1.2e-11 73.2 93 47.3
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 1.2e-11 73.2 92 39.1
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.2e-11 73.2 83 44.6
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 4.6e-11 71.2 93 47.3
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 4.6e-11 71.2 95 36.8
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 4.6e-11 71.2 88 35.2
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 6.0e-11 70.9 92 35.9
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 7.8e-11 70.5 92 37.0
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 1.3e-10 69.7 97 43.3
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 1.7e-10 69.3 90 35.6
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 1.7e-10 69.3 92 34.8
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 1.7e-10 69.3 92 39.1
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.3e-10 68.9 83 37.3
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 3.0e-10 68.6 91 35.2
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 3.0e-10 68.6 91 35.2
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 3.9e-10 68.2 91 34.1
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 5.1e-10 67.8 94 42.6
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 5.1e-10 67.8 94 42.6
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.1e-10 67.8 83 37.3
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 5.1e-10 67.8 91 37.4
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.5e-09 66.2 61 49.2
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.5e-09 66.2 83 36.1
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 6.9e-07 57.4 92 33.7
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 9.0e-07 57.0 34 67.6
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.0e-06 55.8 49 46.9
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 2.0e-06 55.8 71 35.2
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 4.4e-06 54.7 84 31.0


User provided reference genes

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