Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 9.5e-84 313.5 167 100.0
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 1.3e-64 250.0 169 79.3
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 1.3e-64 250.0 167 77.2
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 1.7e-64 249.6 167 78.4
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.7e-64 249.6 171 78.9
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 2.2e-64 249.2 168 78.6
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 2.9e-64 248.8 169 77.5
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 4.9e-64 248.1 168 78.0
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 6.4e-64 247.7 167 74.9
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 1.4e-63 246.5 168 78.0
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 1.4e-63 246.5 169 76.9
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 1.9e-63 246.1 168 77.4
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 1.9e-63 246.1 167 75.4
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 3.2e-63 245.4 169 76.3
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 3.2e-63 245.4 167 76.6
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 9.3e-63 243.8 167 76.6
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 9.3e-63 243.8 167 73.1
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 1.2e-62 243.4 167 72.5
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 2.1e-62 242.7 171 76.6
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 2.1e-62 242.7 167 74.9
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 2.7e-62 242.3 169 76.3
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 2.7e-62 242.3 167 77.2
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 3.5e-62 241.9 168 76.2
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 6.0e-62 241.1 167 76.0
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 7.9e-62 240.7 168 75.0
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 1.3e-61 240.0 169 76.3
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 1.3e-61 240.0 168 76.2
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.3e-61 240.0 168 73.2
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 2.3e-61 239.2 168 75.0
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 5.1e-61 238.0 171 74.9
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 5.1e-61 238.0 168 73.2
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 5.1e-61 238.0 167 74.9
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 5.1e-61 238.0 167 74.3
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 6.7e-61 237.7 168 73.8
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 6.7e-61 237.7 169 74.0
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 6.7e-61 237.7 167 73.7
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.5e-60 235.7 168 72.0
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 3.3e-60 235.3 168 73.2
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 5.6e-60 234.6 168 72.0
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 5.6e-60 234.6 167 72.5
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 1.3e-59 233.4 170 72.4
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 1.3e-59 233.4 167 71.9
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 1.6e-59 233.0 169 71.6
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 1.6e-59 233.0 167 71.3
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 2.8e-59 232.3 169 71.6
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 2.8e-59 232.3 169 72.2
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 4.8e-59 231.5 163 75.5
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 1.1e-58 230.3 168 73.2
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 1.4e-58 229.9 169 74.0
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 1.4e-58 229.9 168 73.8
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 1.4e-58 229.9 170 71.8
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 1.8e-58 229.6 169 70.4
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 1.8e-58 229.6 168 72.6
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 2.4e-58 229.2 169 72.2
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 3.1e-58 228.8 169 71.6
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 4.0e-58 228.4 169 74.0
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 5.3e-58 228.0 167 70.7
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 9.0e-58 227.3 169 71.6
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 1.5e-57 226.5 167 68.3
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 1.5e-57 226.5 169 71.0
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 2.6e-57 225.7 170 68.8
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 3.4e-57 225.3 167 68.3
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 5.8e-57 224.6 170 71.2
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 9.9e-57 223.8 172 70.3
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 3.8e-56 221.9 161 72.0
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 4.9e-56 221.5 169 70.4
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 1.1e-55 220.3 167 69.5
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 1.1e-55 220.3 170 70.0
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 1.1e-55 220.3 169 71.0
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 1.1e-55 220.3 173 70.5
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 2.4e-55 219.2 172 67.4
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 4.2e-55 218.4 168 68.5
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 4.2e-55 218.4 169 68.0
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 4.2e-55 218.4 169 68.0
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 4.2e-55 218.4 169 68.0
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 4.2e-55 218.4 169 69.2
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 5.5e-55 218.0 163 68.1
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 5.5e-55 218.0 169 68.0
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 7.1e-55 217.6 156 71.8
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 9.3e-55 217.2 169 68.0
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 1.6e-54 216.5 171 67.3
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 2.1e-54 216.1 167 66.5
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 2.7e-54 215.7 169 67.5
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 2.7e-54 215.7 171 68.4
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 3.5e-54 215.3 172 66.3
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 3.5e-54 215.3 168 64.3
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 4.6e-54 214.9 169 66.9
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 4.6e-54 214.9 169 66.9
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 4.6e-54 214.9 170 67.1
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 7.9e-54 214.2 172 65.7
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 7.9e-54 214.2 166 66.9
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 1.8e-53 213.0 172 66.3
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 1.8e-53 213.0 168 67.3
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 2.3e-53 212.6 169 66.3
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 2.3e-53 212.6 172 66.9
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 2.3e-53 212.6 168 68.5
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 2.3e-53 212.6 153 73.2
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 5.1e-53 211.5 171 65.5
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 5.1e-53 211.5 171 65.5
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 6.7e-53 211.1 167 65.9
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 8.7e-53 210.7 172 64.5
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 8.7e-53 210.7 167 67.1
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 1.1e-52 210.3 168 66.1
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 1.1e-52 210.3 167 65.9
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 1.1e-52 210.3 171 64.9
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 1.5e-52 209.9 171 64.3
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 1.5e-52 209.9 144 77.8
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 1.9e-52 209.5 167 65.9
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 1.9e-52 209.5 171 64.3
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 1.9e-52 209.5 167 65.9
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 2.5e-52 209.1 170 64.7
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 2.5e-52 209.1 168 65.5
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 2.5e-52 209.1 168 66.1
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 3.3e-52 208.8 167 65.3
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 3.3e-52 208.8 167 65.3
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 3.3e-52 208.8 167 65.3
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 3.3e-52 208.8 169 66.3
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 4.3e-52 208.4 170 68.8
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 4.3e-52 208.4 167 67.1
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 1.6e-51 206.5 164 64.0
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 2.1e-51 206.1 169 64.5
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 2.1e-51 206.1 169 64.5
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 2.1e-51 206.1 169 64.5
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 2.1e-51 206.1 167 64.1
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 2.8e-51 205.7 164 65.2
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 1.8e-50 203.0 168 63.7
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 5.3e-50 201.4 168 64.3
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.2e-49 200.3 168 64.9
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 1.2e-49 200.3 171 65.5
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 1.2e-49 200.3 171 65.5
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 1.5e-49 199.9 168 63.7
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 1.5e-49 199.9 164 65.2
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 2.0e-49 199.5 161 67.1
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 1.3e-48 196.8 170 65.3
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 4.9e-48 194.9 170 64.1
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 8.4e-48 194.1 171 64.3
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 4.2e-47 191.8 161 60.2
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 3.5e-46 188.7 170 61.8
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 3.1e-42 175.6 102 79.4
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 9.0e-42 174.1 100 80.0
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 4.5e-41 171.8 102 77.5
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 1.0e-40 170.6 169 57.4
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 1.0e-40 170.6 169 57.4
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 9.3e-39 164.1 100 73.0
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 6.1e-38 161.4 174 54.0
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 7.9e-38 161.0 168 55.4
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 5.1e-37 158.3 217 47.0
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 6.7e-37 157.9 171 50.9
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 3.1e-34 149.1 141 58.2
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 3.4e-33 145.6 174 46.6
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 7.7e-33 144.4 167 47.9
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 2.2e-32 142.9 172 45.9
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 6.5e-32 141.4 175 46.3
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 8.8e-29 131.0 137 48.9
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 1.5e-28 130.2 135 51.9
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 4.4e-28 128.6 70 81.4
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.8e-27 125.9 70 80.0
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 1.8e-26 123.2 170 45.9
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 4.5e-25 118.6 161 46.0
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 5.9e-25 118.2 178 46.6
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 5.0e-24 115.2 171 42.1
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.7e-19 100.1 75 64.0
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.7e-19 100.1 67 70.1
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 4.4e-12 75.5 44 72.7
TAR628G0544 Trochodendron aralioides HOM05D004247 ORTHO05D004994 1.2e-09 67.4 62 64.5
Cc01_g01310 Coffea canephora HOM05D004247 ORTHO05D004994 2.9e-08 62.8 73 60.3


User provided reference genes

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