Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 0.0e+00 1651.0 887 100.0
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 6.3e-227 791.6 895 50.7
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 1.4e-213 747.3 866 49.7
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 6.4e-211 738.4 869 49.4
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 7.6e-204 714.9 866 48.0
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 6.4e-203 711.8 861 47.0
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 3.2e-202 709.5 842 48.5
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 1.6e-201 707.2 871 50.1
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 7.8e-201 704.9 807 50.3
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 1.7e-195 687.2 864 47.8
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 1.9e-194 683.7 950 45.1
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 5.4e-194 682.2 863 46.6
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 8.7e-192 674.9 863 45.9
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 1.2e-188 664.5 860 48.8
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 2.6e-188 663.3 863 46.1
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 6.0e-185 652.1 813 46.7
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 4.3e-183 646.0 865 46.1
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 5.6e-183 645.6 795 47.2
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 9.0e-181 638.3 815 45.8
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 1.2e-180 637.9 816 46.2
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 3.8e-179 632.9 811 45.6
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 1.1e-178 631.3 873 48.1
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 1.1e-175 621.3 868 43.0
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 5.6e-175 619.0 889 42.3
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 1.3e-174 617.8 798 45.5
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 6.9e-173 612.1 801 53.4
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 1.2e-172 611.3 869 45.6
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 1.5e-172 610.9 869 42.6
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 4.5e-172 609.4 881 43.4
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.0e-171 608.2 802 44.8
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 1.3e-171 607.8 892 42.4
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 1.7e-171 607.4 868 43.0
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 6.5e-171 605.5 804 44.3
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 1.1e-170 604.7 867 43.4
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 5.5e-170 602.4 653 52.5
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 1.6e-169 600.9 820 44.4
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 1.3e-168 597.8 860 43.7
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 3.0e-168 596.7 867 44.2
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 6.7e-168 595.5 899 45.3
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 8.7e-168 595.1 860 44.0
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 1.1e-167 594.7 868 46.9
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 4.8e-166 589.3 814 43.6
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 2.4e-165 587.0 810 43.1
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 2.4e-165 587.0 871 41.6
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 3.1e-165 586.6 806 43.7
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 3.1e-165 586.6 825 43.9
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 4.1e-165 586.3 866 49.1
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 4.1e-165 586.3 821 43.0
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 5.3e-165 585.9 821 43.8
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 2.0e-164 583.9 800 43.0
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 2.6e-164 583.6 821 43.2
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 4.5e-164 582.8 861 41.9
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 2.9e-163 580.1 804 43.3
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 1.1e-162 578.2 869 41.8
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 1.4e-162 577.8 799 43.8
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 3.2e-162 576.6 602 54.3
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 3.2e-162 576.6 831 45.4
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 7.1e-162 575.5 855 46.0
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 2.1e-161 573.9 808 43.8
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 2.1e-161 573.9 808 43.8
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 3.5e-161 573.2 807 49.8
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 4.6e-161 572.8 865 42.0
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 4.6e-161 572.8 826 43.2
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 6.1e-161 572.4 881 41.0
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 6.1e-161 572.4 858 42.3
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 7.9e-161 572.0 835 43.6
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 2.3e-160 570.5 873 41.0
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 1.1e-159 568.2 862 40.6
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 1.1e-159 568.2 847 39.6
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 1.5e-159 567.8 854 40.7
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 3.7e-158 563.1 858 42.9
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 6.3e-158 562.4 799 42.9
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 1.4e-157 561.2 804 43.3
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 3.4e-156 556.6 749 44.3
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 4.5e-156 556.2 677 48.6
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 4.2e-154 549.7 805 42.7
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 5.5e-154 549.3 906 38.9
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 1.0e-152 545.0 610 50.5
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 8.8e-152 542.0 819 39.9
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 1.0e-147 528.5 633 47.2
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 1.7e-147 527.7 858 39.6
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 1.1e-146 525.0 803 46.0
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 6.1e-145 519.2 691 45.3
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 3.7e-142 510.0 853 38.6
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 7.0e-141 505.8 641 44.5
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 4.2e-138 496.5 749 42.1
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 6.3e-134 482.6 842 41.6
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 1.4e-133 481.5 814 39.2
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 1.7e-131 474.6 800 38.6
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 9.4e-122 442.2 680 43.4
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 4.0e-120 436.8 562 45.6
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 4.0e-120 436.8 848 34.1
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 1.2e-119 435.3 652 42.6
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 3.0e-112 410.6 677 41.5
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 2.9e-102 377.5 559 41.9
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 1.8e-96 358.2 520 43.1
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 3.0e-91 340.9 662 35.0
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 5.8e-79 300.1 619 37.3
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 1.9e-69 268.5 368 44.3
TPR.G8631 Trifolium pratense HOM05D005833 ORTHO05D008135 4.8e-49 200.7 351 38.5
Glyma.14G222150 Glycine max HOM05D005833 ORTHO05D008135 1.4e-45 189.1 205 50.2
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 3.3e-42 177.9 170 56.5
AagrBONN_evm.TU.Sc2ySwM_117.1478 Anthoceros agrestis HOM05D005833 ORTHO05D008135 3.1e-40 171.4 464 28.2
SMO230G0024 Selaginella moellendorffii HOM05D005833 ORTHO05D008135 7.7e-39 166.8 576 26.4
Pp3c11_2930 Physcomitrium patens HOM05D005833 ORTHO05D008135 2.9e-38 164.9 590 26.1
CBR_g11913 Chara braunii HOM05D005833 ORTHO05D008135 3.6e-36 157.9 637 23.2
Mapoly0009s0070 Marchantia polymorpha HOM05D005833 ORTHO05D008135 3.6e-36 157.9 598 24.7
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 6.1e-36 157.1 420 32.1
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 8.8e-35 153.3 267 38.6
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 2.4e-32 145.2 391 30.4
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 4.4e-26 124.4 150 43.3
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 4.4e-26 124.4 150 43.3
Lj5g0006874 Lotus japonicus HOM05D005833 ORTHO05D008135 1.4e-19 102.8 86 55.8
TPR.G8633 Trifolium pratense HOM05D005833 ORTHO05D008135 3.3e-18 98.2 98 49.0
Oeu011332.1 Olea europaea HOM05D005833 ORTHO05D008135 1.7e-14 85.9 130 43.1
Oeu011333.1 Olea europaea HOM05D005833 ORTHO05D008135 1.7e-14 85.9 130 43.1
BcaC08g47271 Brassica carinata HOM05D005833 ORTHO05D008135 1.2e-12 79.7 124 41.1
BcaB05g24986 Brassica carinata HOM05D005833 ORTHO05D008135 3.6e-12 78.2 68 61.8
DCAR_009530 Daucus carota HOM05D005833 ORTHO05D008135 6.1e-12 77.4 128 37.5
Nitab4.5_0000198g0010 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.4e-11 76.3 123 40.7
Medtr1g026480 Medicago truncatula HOM05D005833 ORTHO05D008135 7.5e-10 70.5 110 40.0
AagrBONN_evm.TU.Sc2ySwM_344.4327 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.4e-08 66.2 324 21.6
AagrBONN_evm.TU.Sc2ySwM_362.2297 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.1e-08 63.5 334 22.8
FvH4_3g28520 Fragaria vesca HOM05D000001 ORTHO05D000003 1.2e-07 63.2 300 21.0
FAN11G2154 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.6e-07 62.8 300 21.0
vmacro21815 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 1.6e-07 62.8 61 50.8
Os02g0167200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 4.5e-07 61.2 248 22.6
AagrBONN_evm.TU.Sc2ySwM_368.48 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.7e-07 60.5 312 21.8
RcHm_v2.0_Chr4g0402431 Rosa chinensis HOM05D000001 ORTHO05D000003 7.7e-07 60.5 291 22.0
CDE07G0739 Ceratophyllum demersum HOM05D003039 ORTHO05D008410 1.0e-06 60.1 128 32.0
Gorai.001G039300 Gossypium raimondii HOM05D000001 ORTHO05D000003 1.7e-06 59.3 320 20.6
AagrBONN_evm.TU.Sc2ySwM_344.3848 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.2e-06 58.9 292 19.9
Manes.06G051800 Manihot esculenta HOM05D000001 ORTHO05D000003 2.2e-06 58.9 339 20.9
ClCG05G013910 Citrullus lanatus HOM05D000001 ORTHO05D000003 2.9e-06 58.5 318 21.1
MELO3C014921.2 Cucumis melo HOM05D000001 ORTHO05D000003 2.9e-06 58.5 317 19.6
Gohir.D07G037600 Gossypium hirsutum HOM05D000001 ORTHO05D000003 2.9e-06 58.5 313 20.4
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 2.9e-06 58.5 167 26.3
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 3.8e-06 58.2 272 18.8
AagrBONN_evm.TU.Sc2ySwM_228.2987 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.5e-06 57.4 272 21.3


User provided reference genes

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