Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 1.3e-304 1048.9 531 100.0
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.3e-240 836.3 501 83.2
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 5.8e-236 820.8 530 78.9
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 2.3e-232 808.9 529 77.3
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 5.1e-232 807.7 503 81.5
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 3.3e-231 805.1 467 84.6
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 7.4e-231 803.9 463 86.0
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.8e-229 799.3 482 82.2
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 9.0e-229 797.0 530 77.2
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 2.6e-228 795.4 459 84.1
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 4.5e-228 794.7 482 81.5
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 5.9e-228 794.3 466 83.3
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 7.7e-228 793.9 522 77.0
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.7e-227 792.7 464 82.8
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 1.7e-227 792.7 528 74.8
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 3.8e-227 791.6 518 76.6
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 5.0e-227 791.2 484 80.4
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 5.0e-227 791.2 475 82.3
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 2.5e-226 788.9 528 74.4
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 7.2e-226 787.3 533 75.2
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 7.2e-226 787.3 487 79.7
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 7.2e-226 787.3 544 74.8
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 9.4e-226 786.9 467 82.4
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 2.1e-225 785.8 514 76.7
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 1.8e-224 782.7 464 82.1
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 5.1e-224 781.2 537 74.1
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 6.7e-224 780.8 545 72.7
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 1.1e-223 780.0 474 81.4
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 1.1e-223 780.0 466 82.4
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.1e-223 780.0 461 82.9
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 9.7e-223 776.9 459 81.7
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 1.3e-222 776.5 529 75.2
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 3.7e-222 775.0 521 75.0
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 4.8e-222 774.6 462 81.6
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 6.3e-222 774.2 479 80.8
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 6.3e-222 774.2 523 74.4
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 8.2e-222 773.9 464 81.0
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 1.4e-221 773.1 458 82.5
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 1.8e-221 772.7 529 74.3
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 2.4e-221 772.3 529 75.0
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 2.4e-221 772.3 466 81.5
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 2.4e-221 772.3 529 74.3
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 3.1e-221 771.9 462 81.4
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 6.9e-221 770.8 467 80.1
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 9.1e-221 770.4 529 73.9
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 9.1e-221 770.4 523 74.2
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 1.2e-220 770.0 526 74.7
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.5e-220 769.6 457 83.2
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 2.0e-220 769.2 525 74.3
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 2.0e-220 769.2 460 81.3
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 2.0e-220 769.2 470 80.0
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 5.9e-220 767.7 466 80.0
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 7.7e-220 767.3 511 77.5
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 2.9e-219 765.4 513 76.0
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 3.8e-219 765.0 460 81.3
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 5.0e-219 764.6 460 81.1
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 5.0e-219 764.6 465 80.0
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 8.5e-219 763.8 461 81.3
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 4.2e-218 761.5 470 78.5
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 5.5e-218 761.1 459 80.6
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 1.2e-217 760.0 503 74.8
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 1.6e-217 759.6 503 74.8
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.6e-217 759.6 457 82.7
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 2.7e-217 758.8 518 74.7
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.0e-216 756.9 464 81.0
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.4e-216 756.5 507 74.4
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.3e-216 755.7 521 73.5
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 3.0e-216 755.4 478 78.0
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 3.0e-216 755.4 478 77.4
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.9e-216 755.0 493 76.9
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 5.1e-216 754.6 535 71.4
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 8.8e-216 753.8 466 78.8
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 8.8e-216 753.8 466 78.5
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 8.8e-216 753.8 465 80.2
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 4.4e-215 751.5 462 79.4
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 5.7e-215 751.1 478 77.2
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 9.7e-215 750.4 481 75.3
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.7e-214 749.6 465 78.3
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 2.2e-214 749.2 487 74.9
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 2.8e-214 748.8 466 77.9
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 2.8e-214 748.8 463 78.8
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 2.8e-214 748.8 459 78.6
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 4.8e-214 748.0 500 76.0
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 1.8e-213 746.1 521 72.0
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 2.4e-213 745.7 478 76.6
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 2.4e-213 745.7 478 77.2
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 4.1e-213 745.0 466 77.5
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 4.1e-213 745.0 513 73.9
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 9.1e-213 743.8 463 77.5
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 1.2e-212 743.4 521 72.4
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 3.5e-212 741.9 460 78.3
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 4.5e-212 741.5 522 71.8
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 1.3e-211 740.0 536 70.0
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 3.8e-211 738.4 481 75.5
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 1.9e-210 736.1 465 79.1
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 6.1e-209 731.1 485 74.0
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 3.3e-207 725.3 484 74.6
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 4.4e-207 724.9 464 74.4
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 3.7e-206 721.8 509 71.5
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 1.4e-205 719.9 456 77.9
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 4.1e-205 718.4 499 70.7
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.0e-203 713.8 468 75.9
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 1.1e-202 710.3 483 70.2
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 1.2e-199 700.3 512 68.2
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 1.7e-198 696.4 467 71.7
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 1.7e-198 696.4 458 74.2
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 2.4e-197 692.6 410 82.4
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 4.1e-197 691.8 482 73.0
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 2.2e-195 686.0 461 73.1
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 1.6e-193 679.9 383 87.5
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 1.0e-192 677.2 404 81.7
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 4.0e-192 675.2 461 74.8
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 5.2e-192 674.9 383 85.6
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 8.8e-192 674.1 457 74.6
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 2.0e-188 662.9 459 70.8
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 1.0e-187 660.6 429 76.7
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 3.2e-181 639.0 375 82.9
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 1.6e-180 636.7 518 66.6
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 1.6e-180 636.7 453 66.9
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 2.0e-180 636.3 375 82.1
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 3.5e-180 635.6 453 70.6
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 6.2e-177 624.8 460 70.2
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 2.9e-174 615.9 401 78.1
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 5.4e-173 611.7 712 48.9
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 4.0e-168 595.5 487 64.5
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 2.6e-167 592.8 454 68.1
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 2.9e-166 589.3 453 66.7
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 6.0e-164 581.6 342 83.9
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 7.8e-156 554.7 395 72.2
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 5.3e-120 435.6 323 69.7
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 2.9e-118 429.9 326 69.0
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 7.9e-108 395.2 237 81.9
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 1.1e-98 364.8 251 75.3
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 7.0e-96 355.5 292 61.6
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 3.8e-94 349.7 453 41.5
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.0e-90 337.4 202 80.2
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 6.3e-89 332.4 448 40.4
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 6.3e-89 332.4 448 40.8
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 2.2e-78 297.4 233 64.8
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.6e-60 238.0 399 40.6
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 5.2e-59 233.0 131 84.7
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 1.9e-56 224.6 148 73.6
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 7.3e-53 212.6 165 67.3
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 6.2e-52 209.5 172 62.8
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 3.2e-48 197.2 196 56.1
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.2e-44 185.3 98 90.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 3.4e-42 177.2 377 30.2
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.4e-40 171.8 121 64.5
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 5.4e-40 169.9 91 87.9
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 1.7e-38 164.9 131 59.5
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 3.9e-38 163.7 249 41.8
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 4.7e-36 156.8 124 65.3
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 8.4e-33 146.0 80 87.5
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 4.6e-31 140.2 93 78.5
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 9.6e-29 132.5 290 30.7
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 4.8e-28 130.2 74 83.8
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 3.4e-26 124.0 124 49.2
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 4.5e-26 123.6 100 62.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 1.4e-24 118.6 100 60.0
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 3.7e-12 77.4 56 60.7
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.8e-11 75.1 41 80.5
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 9.0e-11 72.8 43 74.4
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 1.2e-10 72.4 47 68.1
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 3.4e-10 70.9 61 62.3
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 5.5e-08 63.5 38 81.6
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 1.3e-06 58.9 35 71.4


User provided reference genes

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