Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 3.9e-35 151.0 80 100.0
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 2.0e-15 85.5 69 68.1
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 3.8e-14 81.3 52 76.9
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 6.5e-14 80.5 70 68.6
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 1.5e-13 79.3 50 72.0
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 3.2e-13 78.2 68 60.3
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 9.4e-13 76.6 64 62.5
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.2e-12 76.3 51 74.5
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.6e-12 75.9 66 65.2
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.6e-12 75.9 61 65.6
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 3.6e-12 74.7 66 60.6
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 4.7e-12 74.3 67 59.7
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 4.7e-12 74.3 62 62.9
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 6.1e-12 73.9 55 67.3
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 6.1e-12 73.9 63 61.9
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 8.0e-12 73.6 71 60.6
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 1.0e-11 73.2 49 73.5
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 1.4e-11 72.8 54 64.8
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.8e-11 72.4 58 63.8
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 2.3e-11 72.0 62 59.7
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 4.0e-11 71.2 53 66.0
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 5.2e-11 70.9 61 60.7
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 5.2e-11 70.9 50 68.0
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 8.8e-11 70.1 70 55.7
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 8.8e-11 70.1 59 62.7
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 1.1e-10 69.7 69 56.5
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.1e-10 69.7 62 61.3
MBI02_g15148_MAGBIO Magnolia biondii HOM05D007598 ORTHO05D009632 1.5e-10 69.3 51 66.7
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 2.0e-10 68.9 70 52.9
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 2.0e-10 68.9 48 68.8
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 2.0e-10 68.9 50 68.0
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 2.6e-10 68.6 74 51.4
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 2.6e-10 68.6 47 72.3
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 3.3e-10 68.2 66 56.1
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 3.3e-10 68.2 67 56.7
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 4.4e-10 67.8 44 70.5
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 4.4e-10 67.8 55 60.0
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 5.7e-10 67.4 47 70.2
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 5.7e-10 67.4 55 63.6
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 5.7e-10 67.4 55 63.6
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 5.7e-10 67.4 63 58.7
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 5.7e-10 67.4 48 68.8
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 9.7e-10 66.6 48 66.7
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 9.7e-10 66.6 74 51.4
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 1.3e-09 66.2 50 64.0
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 1.3e-09 66.2 50 64.0
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 1.3e-09 66.2 50 64.0
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 1.3e-09 66.2 50 64.0
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 1.3e-09 66.2 66 53.0
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.3e-09 66.2 60 58.3
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 2.2e-09 65.5 67 55.2
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 2.8e-09 65.1 59 59.3
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 2.8e-09 65.1 59 59.3
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 2.8e-09 65.1 43 72.1
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 3.7e-09 64.7 52 61.5
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 3.7e-09 64.7 49 63.3
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 4.8e-09 64.3 50 62.0
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 4.8e-09 64.3 50 62.0
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 4.8e-09 64.3 50 64.0
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 4.8e-09 64.3 72 51.4
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 4.8e-09 64.3 50 64.0
Potri.017G127350 Populus trichocarpa HOM05D007833 ORTHO05D009855 6.3e-09 63.9 69 56.5
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 8.2e-09 63.5 46 67.4
Carub.0004s1626 Capsella rubella HOM05D007598 ORTHO05D009632 1.1e-08 63.2 55 52.7
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 1.4e-08 62.8 61 57.4
Dinv32243 Davidia involucrata HOM05D007598 ORTHO05D009632 1.4e-08 62.8 53 52.8
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 1.4e-08 62.8 43 67.4
CiPaw.01G161200 Carya illinoinensis HOM05D008368 ORTHO05D010489 1.8e-08 62.4 48 58.3
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 1.8e-08 62.4 64 51.6
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 1.8e-08 62.4 44 68.2
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 1.8e-08 62.4 69 47.8
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 1.8e-08 62.4 52 59.6
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 2.4e-08 62.0 64 50.0
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 2.4e-08 62.0 46 65.2
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 2.4e-08 62.0 47 68.1
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 2.4e-08 62.0 66 53.0
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 2.4e-08 62.0 66 53.0
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 2.4e-08 62.0 66 50.0
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 3.1e-08 61.6 49 61.2
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 3.1e-08 61.6 64 54.7
TAR626G0451 Trochodendron aralioides HOM05D007598 ORTHO05D009632 4.1e-08 61.2 53 52.8
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 9.1e-08 60.1 44 63.6
Cc00_g10360 Coffea canephora HOM05D007598 ORTHO05D009632 9.1e-08 60.1 53 49.1
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 9.1e-08 60.1 44 65.9
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 1.2e-07 59.7 37 75.7
ClCG01G024670 Citrullus lanatus HOM05D007598 ORTHO05D009632 1.6e-07 59.3 48 54.2
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 1.6e-07 59.3 44 65.9
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 2.0e-07 58.9 46 63.0
MELO3C007128.2 Cucumis melo HOM05D007598 ORTHO05D009632 2.7e-07 58.5 48 54.2
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 2.7e-07 58.5 69 52.2
Sp4g16850 Schrenkiella parvula HOM05D007598 ORTHO05D009632 2.7e-07 58.5 58 51.7
Aqoxy7G00246 Aquilegia oxysepala HOM05D007598 ORTHO05D009632 4.5e-07 57.8 53 45.3
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 4.5e-07 57.8 62 53.2
CsaV3_6G051780 Cucumis sativus L. HOM05D007598 ORTHO05D009632 5.9e-07 57.4 48 54.2
CARHR128680 Cardamine hirsuta HOM05D007598 ORTHO05D009632 7.7e-07 57.0 55 52.7
Glyma.13G218700 Glycine max HOM05D007598 ORTHO05D009632 7.7e-07 57.0 49 53.1
HanXRQChr04g0114301 Helianthus annuus HOM05D007598 ORTHO05D009632 7.7e-07 57.0 50 50.0
SalBow8G5536 Salvia bowleyana HOM05D007598 ORTHO05D009632 7.7e-07 57.0 51 52.9
Prupe.1G152900 Prunus persica HOM05D008368 ORTHO05D010489 1.3e-06 56.2 42 57.1
A04p26490 Brassica napus HOM05D007598 ORTHO05D009632 1.7e-06 55.8 55 49.1
C04p63910 Brassica napus HOM05D007598 ORTHO05D009632 1.7e-06 55.8 55 49.1
BolC4t27858H Brassica oleracea HOM05D007598 ORTHO05D009632 1.7e-06 55.8 55 49.1
BraA04t18153Z Brassica rapa HOM05D007598 ORTHO05D009632 1.7e-06 55.8 55 49.1
DCAR_027909 Daucus carota HOM05D007598 ORTHO05D009632 1.7e-06 55.8 52 48.1
Nn3g20182 Nelumbo nucifera HOM05D007598 ORTHO05D009632 1.7e-06 55.8 48 52.1
Sabra11G0066800 Salix brachista HOM05D007598 ORTHO05D009632 1.7e-06 55.8 48 52.1
HPP92_000988 Vanilla planifolia HOM05D007598 ORTHO05D009632 1.7e-06 55.8 47 53.2
Migut.M01992 Erythranthe guttata HOM05D007598 ORTHO05D009632 2.2e-06 55.5 48 54.2
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 2.2e-06 55.5 70 51.4
Nitab4.5_0000420g0040 Nicotiana tabacum HOM05D007598 ORTHO05D009632 2.2e-06 55.5 69 37.7
PSO541G2526 Papaver somniferum HOM05D007598 ORTHO05D009632 2.2e-06 55.5 48 50.0
unitig_749.g13736 Utricularia gibba HOM05D007598 ORTHO05D009632 2.2e-06 55.5 48 52.1
AT2G34585 Arabidopsis thaliana HOM05D007598 ORTHO05D009632 2.9e-06 55.1 48 50.0
BcaB06g28784 Brassica carinata HOM05D007598 ORTHO05D009632 2.9e-06 55.1 57 43.9
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 2.9e-06 55.1 43 60.5
Psat1g188680 Pisum sativum HOM05D007598 ORTHO05D009632 2.9e-06 55.1 52 48.1
SalBow6G6192 Salvia bowleyana HOM05D007833 ORTHO05D009855 2.9e-06 55.1 66 50.0
PGSC0003DMG400021093 Solanum tuberosum HOM05D007598 ORTHO05D009632 2.9e-06 55.1 65 40.0
Aa31LG10G6810 Aethionema arabicum HOM05D007598 ORTHO05D009632 3.8e-06 54.7 87 35.6
AL4G30560 Arabidopsis lyrata HOM05D007598 ORTHO05D009632 3.8e-06 54.7 48 50.0
Solyc02g070470.1 Solanum lycopersicum HOM05D007598 ORTHO05D009632 3.8e-06 54.7 76 38.2
Thecc.06G149600 Theobroma cacao HOM05D007598 ORTHO05D009632 3.8e-06 54.7 49 49.0
TWI53G0871 Tripterygium wilfordii HOM05D007598 ORTHO05D009632 3.8e-06 54.7 57 47.4
ATR1098G093 Amborella trichopoda HOM05D007598 ORTHO05D009632 5.0e-06 54.3 48 52.1
AUR62002748 Chenopodium quinoa HOM05D007598 ORTHO05D009632 5.0e-06 54.3 50 48.0
Ca_00537_v3 Cicer arietinum L. HOM05D007598 ORTHO05D009632 5.0e-06 54.3 50 48.0
Migut.M00903 Erythranthe guttata HOM05D007598 ORTHO05D009632 5.0e-06 54.3 48 52.1
HanXRQChr15g0480881 Helianthus annuus HOM05D007598 ORTHO05D009632 5.0e-06 54.3 74 40.5
PGR042G1521 Punica granatum HOM05D007598 ORTHO05D009632 5.0e-06 54.3 52 46.2
Sopen02g019560 Solanum pennellii HOM05D007598 ORTHO05D009632 5.0e-06 54.3 76 38.2
THA.LOC104820651 Tarenaya hassleriana HOM05D007598 ORTHO05D009632 5.0e-06 54.3 51 47.1
EL10Ac8g19673 Beta vulgaris HOM05D007598 ORTHO05D009632 6.5e-06 53.9 70 40.0
CiPaw.10G091200 Carya illinoinensis HOM05D007598 ORTHO05D009632 6.5e-06 53.9 63 41.3
FvH4_3g05470 Fragaria vesca HOM05D007598 ORTHO05D009632 6.5e-06 53.9 48 47.9
FAN11G3574 Fragaria x ananassa HOM05D007598 ORTHO05D009632 6.5e-06 53.9 48 47.9
Gohir.D10G042400 Gossypium hirsutum HOM05D007598 ORTHO05D009632 6.5e-06 53.9 47 51.1
Potri.011G084300 Populus trichocarpa HOM05D007598 ORTHO05D009632 6.5e-06 53.9 48 50.0
SEGI_36626 Sequoiadendron giganteum HOM05D007598 ORTHO05D009632 6.5e-06 53.9 49 49.0
Actinidia08510 Actinidia chinensis HOM05D008368 ORTHO05D010489 8.5e-06 53.5 59 42.4


User provided reference genes

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