Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 5.5e-237 823.9 426 100.0
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 6.9e-187 657.5 345 97.1
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 2.1e-127 459.9 333 68.5
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 1.2e-125 454.1 333 67.3
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 2.6e-125 453.0 330 64.5
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 7.5e-125 451.4 332 67.8
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 7.5e-125 451.4 332 66.9
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 9.8e-125 451.1 377 61.0
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 1.7e-124 450.3 332 66.9
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 2.8e-124 449.5 332 66.9
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 3.7e-124 449.1 332 66.9
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 4.8e-124 448.7 331 65.3
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 8.3e-124 448.0 361 62.9
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 1.4e-123 447.2 332 67.5
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.8e-123 446.8 330 64.5
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 1.8e-123 446.8 331 64.7
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 5.4e-123 445.3 330 68.5
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 7.0e-123 444.9 330 63.9
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 7.0e-123 444.9 332 66.3
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 9.1e-123 444.5 333 65.2
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 9.1e-123 444.5 369 61.2
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 2.7e-122 443.0 333 64.6
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 2.7e-122 443.0 330 63.6
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 1.0e-121 441.0 332 65.1
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.3e-121 440.7 330 64.8
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 1.3e-121 440.7 330 63.9
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 1.7e-121 440.3 331 65.3
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 1.7e-121 440.3 332 64.8
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 2.3e-121 439.9 333 65.5
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 2.9e-121 439.5 333 66.7
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 3.8e-121 439.1 348 61.8
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 8.6e-121 438.0 333 66.1
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 8.6e-121 438.0 332 65.4
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 1.1e-120 437.6 331 63.1
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 1.5e-120 437.2 332 65.1
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 2.5e-120 436.4 332 66.0
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 3.3e-120 436.0 348 61.5
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 3.3e-120 436.0 332 65.1
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 3.3e-120 436.0 333 65.2
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 4.2e-120 435.6 336 64.0
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 5.5e-120 435.3 331 65.0
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 9.5e-120 434.5 333 64.6
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 3.6e-119 432.6 332 64.8
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 3.6e-119 432.6 330 63.9
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 3.6e-119 432.6 331 64.0
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 4.7e-119 432.2 330 63.6
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 4.7e-119 432.2 333 64.6
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 1.0e-118 431.0 331 64.0
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 1.0e-118 431.0 333 63.4
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 1.0e-118 431.0 333 64.0
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 1.4e-118 430.6 330 63.6
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 1.8e-118 430.3 330 63.6
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.8e-118 430.3 335 63.6
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 2.3e-118 429.9 318 66.4
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 3.0e-118 429.5 330 63.6
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 4.0e-118 429.1 358 60.9
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 4.0e-118 429.1 318 66.4
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 2.6e-117 426.4 317 64.7
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 3.4e-117 426.0 333 63.4
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 1.1e-115 421.0 331 64.4
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 1.4e-115 420.6 330 60.3
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 2.4e-115 419.9 333 62.2
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 4.5e-114 415.6 332 62.0
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 5.9e-114 415.2 318 66.7
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 5.9e-114 415.2 324 64.5
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 3.8e-113 412.5 335 62.4
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 1.5e-112 410.6 332 62.0
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 1.5e-112 410.6 320 62.8
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 5.6e-112 408.7 344 57.8
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 1.6e-111 407.1 331 61.9
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 2.8e-111 406.4 336 60.4
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 6.1e-111 405.2 333 60.4
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 2.3e-110 403.3 344 57.0
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 3.1e-110 402.9 334 60.2
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 1.2e-109 401.0 321 62.6
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.2e-109 401.0 326 62.0
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 3.4e-109 399.4 335 59.7
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 7.5e-109 398.3 333 59.8
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 2.2e-108 396.7 318 61.3
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 2.9e-108 396.4 331 60.1
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 2.9e-108 396.4 335 60.0
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 4.9e-108 395.6 335 59.7
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 4.9e-108 395.6 317 62.5
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 1.9e-107 393.7 321 61.1
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 4.1e-107 392.5 332 58.1
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 9.2e-107 391.3 319 61.1
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 6.0e-106 388.7 336 58.9
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 1.7e-105 387.1 319 59.6
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 1.9e-104 383.6 391 52.9
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 1.9e-104 383.6 394 51.3
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 3.6e-103 379.4 336 56.8
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 8.0e-103 378.3 320 58.8
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 1.8e-102 377.1 292 62.0
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 2.6e-101 373.2 268 64.6
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 9.8e-101 371.3 344 54.4
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 2.9e-100 369.8 342 55.8
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 2.9e-100 369.8 356 54.2
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 3.7e-100 369.4 240 70.4
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 8.3e-100 368.2 333 56.8
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 8.3e-100 368.2 295 63.1
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 7.0e-99 365.2 326 58.6
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 7.0e-99 365.2 331 54.1
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 3.9e-97 359.4 268 63.1
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 3.3e-96 356.3 271 64.2
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 3.3e-96 356.3 271 64.2
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 3.3e-96 356.3 294 62.2
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 7.3e-96 355.1 332 55.1
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 2.1e-95 353.6 330 54.5
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 4.0e-94 349.4 293 61.8
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 1.3e-92 344.4 333 52.6
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 4.9e-92 342.4 272 61.4
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 1.7e-89 334.0 268 60.4
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 3.9e-89 332.8 324 52.5
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 7.3e-88 328.6 362 50.6
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 1.2e-87 327.8 374 47.9
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 3.6e-87 326.2 320 52.5
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 4.7e-87 325.9 255 63.9
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 3.1e-86 323.2 306 55.6
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 2.6e-85 320.1 288 52.4
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 2.7e-82 310.1 251 59.0
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 1.9e-80 303.9 206 69.4
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 3.5e-74 283.1 201 67.7
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 9.9e-69 265.0 178 70.8
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.2e-67 260.0 131 99.2
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 5.4e-67 259.2 246 53.3
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 9.3e-67 258.5 195 65.1
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 3.5e-66 256.5 289 42.9
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 7.9e-66 255.4 305 45.6
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 2.6e-61 240.4 210 56.2
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 5.7e-56 222.6 257 44.0
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 1.1e-54 218.4 249 45.4
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 1.4e-54 218.0 362 39.0
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 1.8e-49 201.1 162 59.3
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 3.0e-49 200.3 286 37.8
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 2.5e-48 197.2 139 66.9
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 3.3e-48 196.8 166 60.2
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 1.2e-42 178.3 208 47.1
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 6.1e-42 176.0 205 48.8
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 1.0e-41 175.3 208 46.6
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.4e-41 174.9 127 81.1
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 1.2e-37 161.8 298 34.9
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 2.6e-37 160.6 161 50.3
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 5.2e-25 119.8 82 67.1
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 1.3e-23 115.2 118 52.5
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 2.0e-21 107.8 270 29.3
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 1.7e-20 104.8 120 45.0
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 1.0e-17 95.5 111 43.2
Dinv27372 Davidia involucrata HOM05D004729 ORTHO05D005451 1.9e-11 74.7 58 63.8
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 7.2e-11 72.8 90 44.4
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 7.2e-11 72.8 90 44.4
ECA248G3021 Erigeron canadensis HOM05D004729 ORTHO05D005451 3.0e-09 67.4 71 46.5
Sabra02G0069200 Salix brachista HOM05D004729 ORTHO05D005451 3.0e-09 67.4 49 65.3
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 2.0e-08 64.7 63 47.6
Nn1g08661 Nelumbo nucifera HOM05D004729 ORTHO05D005451 5.7e-08 63.2 48 52.1


User provided reference genes

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