Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 5.4e-84 314.3 161 100.0
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 5.9e-22 108.2 64 85.9
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 2.6e-17 92.8 120 46.7
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 2.6e-17 92.8 120 46.7
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 4.4e-17 92.0 58 75.9
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 1.3e-16 90.5 120 49.2
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 2.2e-16 89.7 109 45.9
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 3.7e-16 89.0 57 75.4
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 6.3e-16 88.2 120 45.0
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 6.3e-16 88.2 63 71.4
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 8.2e-16 87.8 63 69.8
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 1.1e-15 87.4 121 44.6
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 1.1e-15 87.4 52 80.8
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.1e-15 87.4 106 48.1
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 1.1e-15 87.4 62 67.7
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.4e-15 87.0 63 65.1
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 1.4e-15 87.0 57 75.4
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 1.8e-15 86.7 131 41.2
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 1.8e-15 86.7 57 75.4
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 1.8e-15 86.7 62 69.4
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.8e-15 86.7 62 69.4
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 1.8e-15 86.7 121 47.9
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 1.8e-15 86.7 57 75.4
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 1.8e-15 86.7 123 45.5
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 2.4e-15 86.3 63 68.3
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 2.4e-15 86.3 57 75.4
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 2.4e-15 86.3 57 75.4
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 2.4e-15 86.3 122 43.4
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 3.1e-15 85.9 134 40.3
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 3.1e-15 85.9 63 65.1
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 4.1e-15 85.5 57 71.9
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 4.1e-15 85.5 57 71.9
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 4.1e-15 85.5 131 42.7
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 4.1e-15 85.5 120 44.2
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 5.3e-15 85.1 120 45.0
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 6.9e-15 84.7 123 43.1
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 6.9e-15 84.7 62 62.9
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 9.1e-15 84.3 63 68.3
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 1.5e-14 83.6 120 45.0
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 1.5e-14 83.6 128 42.2
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 2.0e-14 83.2 123 43.9
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.0e-14 83.2 63 65.1
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 2.0e-14 83.2 63 65.1
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 2.0e-14 83.2 123 42.3
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 2.0e-14 83.2 60 71.7
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 2.0e-14 83.2 120 45.0
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 2.6e-14 82.8 132 37.9
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 2.6e-14 82.8 123 42.3
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 2.6e-14 82.8 120 42.5
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 2.6e-14 82.8 58 72.4
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 3.4e-14 82.4 63 63.5
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.4e-14 82.4 63 65.1
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 4.5e-14 82.0 121 46.3
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 4.5e-14 82.0 121 46.3
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 5.9e-14 81.6 99 48.5
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 5.9e-14 81.6 120 44.2
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 5.9e-14 81.6 120 44.2
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 7.7e-14 81.3 120 43.3
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 7.7e-14 81.3 63 63.5
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 1.3e-13 80.5 103 44.7
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 1.7e-13 80.1 57 70.2
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 1.7e-13 80.1 57 70.2
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 1.7e-13 80.1 57 68.4
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.7e-13 80.1 60 68.3
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 1.7e-13 80.1 63 63.5
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 1.7e-13 80.1 57 68.4
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 2.2e-13 79.7 95 47.4
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 2.2e-13 79.7 95 47.4
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 2.2e-13 79.7 125 40.8
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 2.9e-13 79.3 120 43.3
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 5.0e-13 78.6 124 39.5
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 6.5e-13 78.2 57 66.7
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 6.5e-13 78.2 63 61.9
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 8.5e-13 77.8 60 65.0
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 8.5e-13 77.8 60 66.7
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.1e-12 77.4 121 42.1
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 1.1e-12 77.4 53 69.8
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 1.1e-12 77.4 53 69.8
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 1.4e-12 77.0 123 41.5
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.4e-12 77.0 52 73.1
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.4e-12 77.0 52 73.1
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.4e-12 77.0 52 73.1
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 1.9e-12 76.6 60 61.7
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 4.2e-12 75.5 117 42.7
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 7.2e-12 74.7 58 62.1
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 7.2e-12 74.7 95 44.2
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 7.2e-12 74.7 120 41.7
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 7.2e-12 74.7 53 66.0
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 1.2e-11 73.9 52 73.1
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 2.1e-11 73.2 60 58.3
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 2.7e-11 72.8 55 63.6
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 3.6e-11 72.4 50 72.0
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 6.1e-11 71.6 56 60.7
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 6.1e-11 71.6 120 40.8
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 8.0e-11 71.2 126 38.9
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 8.0e-11 71.2 126 38.9
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 1.0e-10 70.9 63 58.7
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 1.8e-10 70.1 54 63.0
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 1.8e-10 70.1 56 57.1
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 2.3e-10 69.7 62 56.5
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 2.3e-10 69.7 62 56.5
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 2.3e-10 69.7 56 67.9
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 3.0e-10 69.3 62 54.8
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 3.0e-10 69.3 62 54.8
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 3.9e-10 68.9 54 61.1
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 3.9e-10 68.9 57 61.4
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 3.9e-10 68.9 122 39.3
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 5.2e-10 68.6 60 56.7
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 5.2e-10 68.6 60 56.7
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 8.8e-10 67.8 60 55.0
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 8.8e-10 67.8 60 55.0
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 8.8e-10 67.8 60 55.0
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 1.1e-09 67.4 53 64.2
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 1.1e-09 67.4 107 40.2
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 2.0e-09 66.6 60 56.7
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 4.4e-09 65.5 119 35.3
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 7.4e-09 64.7 88 44.3
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 1.3e-08 63.9 60 51.7
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 1.3e-08 63.9 60 51.7
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 1.7e-08 63.5 144 33.3
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 2.2e-08 63.2 45 64.4
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 3.7e-08 62.4 56 55.4
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 3.7e-08 62.4 60 51.7
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 4.8e-08 62.0 55 52.7
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 6.3e-08 61.6 98 39.8
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.8e-07 60.1 84 35.7
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 2.4e-07 59.7 59 52.5
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 7.0e-07 58.2 121 40.5
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 9.1e-07 57.8 73 39.7


User provided reference genes

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