Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03398 Aquilegia oxysepala HOM05D004390 ORTHO05D004950 1.2e-49 199.5 100 100.0
Eucgr.B03484 Eucalyptus grandis HOM05D004390 ORTHO05D004950 2.6e-36 155.2 95 80.0
DCAR_007008 Daucus carota HOM05D004390 ORTHO05D004950 1.3e-35 152.9 89 80.9
TAR371G0820 Trochodendron aralioides HOM05D004390 ORTHO05D004950 4.9e-35 151.0 100 78.0
QL03p053718 Quercus lobata HOM05D004390 ORTHO05D004950 6.4e-35 150.6 89 76.4
Lsat_1_v5_gn_8_149361 Lactuca sativa HOM05D004390 ORTHO05D004950 2.4e-34 148.7 89 77.5
Nn3g16498 Nelumbo nucifera HOM05D004390 ORTHO05D004950 3.2e-34 148.3 91 79.1
TAR622G0138 Trochodendron aralioides HOM05D004390 ORTHO05D004950 4.2e-34 147.9 100 76.0
Actinidia09657 Actinidia chinensis HOM05D004390 ORTHO05D004950 5.4e-34 147.5 95 74.7
Actinidia20702 Actinidia chinensis HOM05D004390 ORTHO05D004950 7.1e-34 147.1 95 75.8
Medtr8g080380 Medicago truncatula HOM05D004390 ORTHO05D004950 7.1e-34 147.1 90 75.6
Phvul.001G260900 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 7.1e-34 147.1 90 73.3
PGR102G2095 Punica granatum HOM05D004390 ORTHO05D004950 7.1e-34 147.1 95 74.7
CANSAT80G1060 Cannabis sativa HOM05D004390 ORTHO05D004950 9.2e-34 146.7 91 73.6
Cfa009329 Carpinus fangiana HOM05D004390 ORTHO05D004950 9.2e-34 146.7 96 72.9
CiPaw.06G101400 Carya illinoinensis HOM05D004390 ORTHO05D004950 9.2e-34 146.7 99 74.7
Ca_18042_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 1.2e-33 146.4 90 74.4
Haze_10374 Corylus avellana HOM05D004390 ORTHO05D004950 1.2e-33 146.4 82 80.5
MBI11_g07456_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 1.2e-33 146.4 100 75.0
Psat4g014960 Pisum sativum HOM05D004390 ORTHO05D004950 1.2e-33 146.4 92 75.0
Duzib248G1577 Durio zibethinus HOM05D004390 ORTHO05D004950 1.6e-33 146.0 92 78.3
Gohir.D01G154700 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.6e-33 146.0 95 72.6
Gorai.002G191500 Gossypium raimondii HOM05D004390 ORTHO05D004950 1.6e-33 146.0 95 72.6
Psat5g095200 Pisum sativum HOM05D004390 ORTHO05D004950 2.1e-33 145.6 89 74.2
QL12p006243 Quercus lobata HOM05D004390 ORTHO05D004950 2.1e-33 145.6 89 75.3
Atru.chr11.2308 Acer truncatum HOM05D004390 ORTHO05D004950 4.6e-33 144.4 95 75.8
CSS0004094 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 4.6e-33 144.4 95 73.7
CSS0048605 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 4.6e-33 144.4 95 73.7
Dinv14827 Davidia involucrata HOM05D001171 ORTHO05D001872 6.0e-33 144.1 95 75.8
Glyma.11G249600 Glycine max HOM05D004390 ORTHO05D004950 6.0e-33 144.1 90 71.1
ECA233G0624 Erigeron canadensis HOM05D004390 ORTHO05D004950 7.8e-33 143.7 95 72.6
ECA240G0924 Erigeron canadensis HOM05D004390 ORTHO05D004950 7.8e-33 143.7 95 72.6
Gohir.A01G155400 Gossypium hirsutum HOM05D004390 ORTHO05D004950 7.8e-33 143.7 92 73.9
MELO3C011874.2 Cucumis melo HOM05D004390 ORTHO05D004950 1.0e-32 143.3 89 75.3
FvH4_4g23930 Fragaria vesca HOM05D004390 ORTHO05D004950 1.0e-32 143.3 89 74.2
FAN12G2113 Fragaria x ananassa HOM05D006059 ORTHO05D004950 1.0e-32 143.3 89 74.2
Hma1.2p1_0065F.1_g035640 Hydrangea macrophylla HOM05D004390 ORTHO05D004950 1.0e-32 143.3 95 73.7
GSVIVG01010448001 Vitis vinifera HOM05D004390 ORTHO05D004950 1.0e-32 143.3 95 75.8
FAN07G0791 Fragaria x ananassa HOM05D004390 ORTHO05D004950 1.3e-32 142.9 89 73.0
FAN17G1207 Fragaria x ananassa HOM05D004390 ORTHO05D004950 1.3e-32 142.9 89 73.0
FAN22G0688 Fragaria x ananassa HOM05D004390 ORTHO05D004950 1.3e-32 142.9 89 73.0
Cc11_g00910 Coffea canephora HOM05D004390 ORTHO05D004950 1.7e-32 142.5 95 74.7
Lj7E465T0 Lonicera japonica HOM05D004390 ORTHO05D004950 1.7e-32 142.5 91 73.6
Prupe.1G228300 Prunus persica HOM05D004390 ORTHO05D004950 1.7e-32 142.5 89 75.3
Lj4g0026719 Lotus japonicus HOM05D004390 ORTHO05D004950 2.3e-32 142.1 89 74.2
arahy.Tifrunner.gnm1.ann1.FA6GLZ Arachis hypogaea HOM05D004390 ORTHO05D004950 3.0e-32 141.7 89 71.9
ClCG11G013760 Citrullus lanatus HOM05D004390 ORTHO05D004950 3.0e-32 141.7 89 74.2
Glyma.08G103600 Glycine max HOM05D004390 ORTHO05D004950 3.0e-32 141.7 89 74.2
THA.LOC104824895 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 3.0e-32 141.7 95 76.8
Actinidia08077 Actinidia chinensis HOM05D001171 ORTHO05D001872 3.9e-32 141.4 95 73.7
Cpa.g.sc34.218 Carica papaya HOM05D004390 ORTHO05D004950 5.1e-32 141.0 95 71.6
Gorai.008G164900 Gossypium raimondii HOM05D004390 ORTHO05D004950 5.1e-32 141.0 98 67.3
Manes.12G012800 Manihot esculenta HOM05D004390 ORTHO05D004950 5.1e-32 141.0 91 73.6
Potri.010G059300 Populus trichocarpa HOM05D004390 ORTHO05D004950 5.1e-32 141.0 90 73.3
THA.LOC104824892 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 5.1e-32 141.0 95 73.7
THA.LOC104824896 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 5.1e-32 141.0 95 73.7
CsaV3_5G030350 Cucumis sativus L. HOM05D004390 ORTHO05D004950 6.6e-32 140.6 89 73.0
Medtr3g085510 Medicago truncatula HOM05D004390 ORTHO05D004950 6.6e-32 140.6 89 70.8
Nn4g22350 Nelumbo nucifera HOM05D004390 ORTHO05D004950 6.6e-32 140.6 95 74.7
Potri.008G175775 Populus trichocarpa HOM05D004390 ORTHO05D004950 6.6e-32 140.6 95 70.5
COL.COLO4_20382 Corchorus olitorius HOM05D001171 ORTHO05D001872 8.7e-32 140.2 95 72.6
CARHR246620 Cardamine hirsuta HOM05D004390 ORTHO05D004950 1.1e-31 139.8 92 72.8
Duzib251G0716 Durio zibethinus HOM05D004390 ORTHO05D004950 1.1e-31 139.8 89 76.4
Rhsim10G0039200 Rhododendron simsii HOM05D004390 ORTHO05D004950 1.1e-31 139.8 97 69.1
THA.LOC104824898 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.1e-31 139.8 95 75.8
arahy.Tifrunner.gnm1.ann1.CM82MG Arachis hypogaea HOM05D004390 ORTHO05D004950 1.5e-31 139.4 89 70.8
Glyma.18G007600 Glycine max HOM05D004390 ORTHO05D004950 1.5e-31 139.4 92 70.7
Gohir.A12G148600 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.5e-31 139.4 89 75.3
Phvul.002G174400 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 1.5e-31 139.4 89 71.9
TPR.G28271 Trifolium pratense HOM05D004390 ORTHO05D004950 1.5e-31 139.4 89 73.0
Sed0024223 Sechium edule HOM05D004390 ORTHO05D004950 1.9e-31 139.0 89 70.8
AL7G12360 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 2.5e-31 138.7 91 71.4
Migut.E00025 Erythranthe guttata HOM05D004390 ORTHO05D004950 2.5e-31 138.7 96 69.8
Carub.0007s0202 Capsella rubella HOM05D004390 ORTHO05D004950 3.3e-31 138.3 95 72.6
Cc09_g06290 Coffea canephora HOM05D015856 ORTHO05D004950 3.3e-31 138.3 96 72.9
arahy.Tifrunner.gnm1.ann1.L53BL2 Arachis hypogaea HOM05D004390 ORTHO05D004950 4.3e-31 137.9 89 71.9
Hund25458 Selenicereus undatus HOM05D004390 ORTHO05D004950 4.3e-31 137.9 97 70.1
THA.LOC104824890 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 4.3e-31 137.9 95 73.7
THA.LOC109116235 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 4.3e-31 137.9 79 81.0
TWI18G1082 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 4.3e-31 137.9 95 71.6
Migut.K00715 Erythranthe guttata HOM05D004390 ORTHO05D004950 5.6e-31 137.5 89 70.8
Glyma.05G146700 Glycine max HOM05D004390 ORTHO05D004950 7.3e-31 137.1 89 71.9
Nitab4.5_0000379g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 7.3e-31 137.1 95 68.4
PSO017G1102 Papaver somniferum HOM05D004390 ORTHO05D004950 7.3e-31 137.1 100 69.0
PSO478G0183 Papaver somniferum HOM05D004390 ORTHO05D004950 7.3e-31 137.1 99 69.7
Thecc.02G210700 Theobroma cacao HOM05D004390 ORTHO05D004950 7.3e-31 137.1 92 75.0
AT4G40042 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 1.3e-30 136.3 83 77.1
Gohir.D12G152500 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.3e-30 136.3 89 74.2
TAR629G1658 Trochodendron aralioides HOM05D004390 ORTHO05D004950 1.3e-30 136.3 99 68.7
BcaNung00935 Brassica carinata HOM05D004390 ORTHO05D004950 1.6e-30 136.0 95 73.7
Ca_16468_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 1.6e-30 136.0 100 67.0
Nitab4.5_0000367g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.6e-30 136.0 95 67.4
EL10Ac6g13484 Beta vulgaris HOM05D004390 ORTHO05D004950 2.1e-30 135.6 89 70.8
BolC1t00106H Brassica oleracea HOM05D004390 ORTHO05D004950 2.1e-30 135.6 95 72.6
AUR62024125 Chenopodium quinoa HOM05D004390 ORTHO05D004950 2.1e-30 135.6 84 75.0
HanXRQChr08g0207731 Helianthus annuus HOM05D004390 ORTHO05D004950 2.1e-30 135.6 89 70.8
MBI13_g26147_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 2.1e-30 135.6 100 69.0
Sc11g0000500 Simmondsia chinensis HOM05D004390 ORTHO05D004950 2.1e-30 135.6 95 68.4
Thhalv10027263m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 3.6e-30 134.8 95 71.6
A01p00960 Brassica napus HOM05D004390 ORTHO05D004950 4.8e-30 134.4 95 71.6
BraA01t00094Z Brassica rapa HOM05D004390 ORTHO05D004950 4.8e-30 134.4 95 71.6
Os12g0438900 Oryza sativa ssp. japonica HOM05D004390 ORTHO05D004950 4.8e-30 134.4 91 68.1
Sp7g35820 Schrenkiella parvula HOM05D004390 ORTHO05D004950 4.8e-30 134.4 95 73.7
TWI36G1003 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 4.8e-30 134.4 91 73.6
Peaxi162Scf00128g01124 Petunia axillaris HOM05D004390 ORTHO05D004950 6.2e-30 134.0 98 67.3
CARHR113610 Cardamine hirsuta HOM05D004390 ORTHO05D004950 8.1e-30 133.7 89 74.2
Nitab4.5_0002210g0100 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.4e-29 132.9 91 67.0
TWI75G0215 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 1.4e-29 132.9 95 69.5
Rhsim12G0027700 Rhododendron simsii HOM05D004390 ORTHO05D004950 1.8e-29 132.5 86 70.9
AT2G22425 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 2.4e-29 132.1 89 71.9
CAN.G638.34 Capsicum annuum HOM05D004390 ORTHO05D004950 2.4e-29 132.1 91 69.2
SpUn0131_0010 Schrenkiella parvula HOM05D004390 ORTHO05D004950 2.4e-29 132.1 91 69.2
Sabra08G0134000 Salix brachista HOM05D004390 ORTHO05D004950 3.1e-29 131.7 95 66.3
Ah.02g130970 Amaranthus hybridus HOM05D004390 ORTHO05D004950 4.0e-29 131.3 95 66.3
Oeu058917.1 Olea europaea HOM05D004390 ORTHO05D004950 5.3e-29 131.0 90 73.3
CSS0024228 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 6.9e-29 130.6 95 71.6
Carub.0004s0159 Capsella rubella HOM05D004390 ORTHO05D004950 9.0e-29 130.2 89 71.9
Nitab4.5_0000592g0450 Nicotiana tabacum HOM05D004390 ORTHO05D004950 9.0e-29 130.2 91 67.0
HPP92_024163 Vanilla planifolia HOM05D000064 ORTHO05D000281 9.0e-29 130.2 90 67.8
HPP92_024177 Vanilla planifolia HOM05D004390 ORTHO05D004950 9.0e-29 130.2 90 67.8
Thhalv10000378m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 1.2e-28 129.8 89 73.0
Aa31LG7G14400 Aethionema arabicum HOM05D004390 ORTHO05D004950 2.0e-28 129.0 90 68.9
Aa31LG7G15420 Aethionema arabicum HOM05D004390 ORTHO05D004950 2.6e-28 128.6 90 67.8
AL4G11930 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 3.4e-28 128.3 95 67.4
BraA09t41150Z Brassica rapa HOM05D004390 ORTHO05D004950 5.8e-28 127.5 89 67.4
Sopen03g001750 Solanum pennellii HOM05D004390 ORTHO05D004950 5.8e-28 127.5 91 64.8
A09p57580 Brassica napus HOM05D004390 ORTHO05D004950 7.6e-28 127.1 89 67.4
C08p40770 Brassica napus HOM05D004390 ORTHO05D004950 7.6e-28 127.1 89 67.4
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 1.3e-27 126.3 95 62.1
Thhalv10021836m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 1.3e-27 126.3 91 64.8
PSO063G2970 Papaver somniferum HOM05D004390 ORTHO05D004950 1.3e-27 126.3 95 62.1
ClCG09G006830 Citrullus lanatus HOM05D004390 ORTHO05D004950 1.7e-27 125.9 89 66.3
MBI05_g44034_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 1.7e-27 125.9 98 66.3
Lsat_1_v5_gn_3_29821 Lactuca sativa HOM05D004390 ORTHO05D004950 2.2e-27 125.6 78 73.1
Zm00001eb052740 Zea mays HOM05D004390 ORTHO05D004950 2.2e-27 125.6 92 63.0
Zm00001eb218300 Zea mays HOM05D004390 ORTHO05D004950 2.2e-27 125.6 99 63.6
Duzib268G0993 Durio zibethinus HOM05D004390 ORTHO05D004950 4.9e-27 124.4 95 66.3
PSO782G4737 Papaver somniferum HOM05D004390 ORTHO05D004950 4.9e-27 124.4 95 60.0
BcaC07g41074 Brassica carinata HOM05D004390 ORTHO05D004950 6.4e-27 124.0 89 66.3
BolC8t51641H Brassica oleracea HOM05D004390 ORTHO05D004950 6.4e-27 124.0 89 66.3
BcaB08g35066 Brassica carinata HOM05D004390 ORTHO05D004950 8.4e-27 123.6 95 65.3
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 2.4e-26 122.1 89 66.3
Aa31LG6G15170 Aethionema arabicum HOM05D004390 ORTHO05D004950 3.2e-26 121.7 95 65.3
Lalb_Chr12g0206281 Lupinus albus HOM05D004390 ORTHO05D004950 4.2e-26 121.3 77 75.3
RcHm_v2.0_Chr4g0430591 Rosa chinensis HOM05D004390 ORTHO05D004950 7.1e-26 120.6 83 68.7
Carub.0003s1416 Capsella rubella HOM05D004390 ORTHO05D004950 9.3e-26 120.2 91 61.5
CARHR089330 Cardamine hirsuta HOM05D004390 ORTHO05D004950 1.2e-25 119.8 79 67.1
Lalb_Chr07g0187411 Lupinus albus HOM05D004390 ORTHO05D004950 1.6e-25 119.4 77 71.4
ATR0561G166 Amborella trichopoda HOM05D004390 ORTHO05D004950 4.6e-25 117.9 95 62.1
MBI07_g16243_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D004950 4.6e-25 117.9 89 69.7
MD13G1117200 Malus domestica HOM05D004390 ORTHO05D004950 8.7e-24 113.6 83 66.3
CiPaw.05G111600 Carya illinoinensis HOM05D004390 ORTHO05D004950 1.5e-23 112.8 77 71.4
SMO364G0480 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 3.3e-23 111.7 97 58.8
Pp3c4_12150 Physcomitrium patens HOM05D004390 ORTHO05D004950 2.8e-22 108.6 96 57.3
ATR1098G064 Amborella trichopoda HOM05D004390 ORTHO05D004950 3.6e-22 108.2 94 61.7
SEGI_16803 Sequoiadendron giganteum HOM05D004390 ORTHO05D004950 6.2e-22 107.5 99 57.6
Solyc03g005740.3 Solanum lycopersicum HOM05D004390 ORTHO05D004950 1.2e-20 103.2 79 60.8
TPR.G10940 Trifolium pratense HOM05D004390 ORTHO05D004950 1.2e-20 103.2 65 73.8
Pp3c10_14440 Physcomitrium patens HOM05D004390 ORTHO05D004950 8.4e-19 97.1 96 52.1
Mapoly0041s0086 Marchantia polymorpha HOM05D004390 ORTHO05D004950 3.2e-18 95.1 66 66.7
MBI07_g34630_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 1.8e-16 89.4 70 60.0
Manes.13G018500 Manihot esculenta HOM05D004390 ORTHO05D004950 2.3e-16 89.0 72 58.3
Sp3g12740 Schrenkiella parvula HOM05D004390 ORTHO05D004950 8.7e-16 87.0 61 67.2
Nn4g24822 Nelumbo nucifera HOM05D002155 ORTHO05D004950 6.2e-14 80.9 72 63.9
Nn1g04852 Nelumbo nucifera HOM05D004390 ORTHO05D004950 1.1e-13 80.1 52 78.8
CBR_g48133 Chara braunii HOM05D004390 ORTHO05D004950 3.1e-13 78.6 69 50.7
MCO16G111 Micromonas commoda HOM05D004390 ORTHO05D004950 4.0e-13 78.2 76 51.3
PRCOL_00005433 Prasinoderma coloniale HOM05D004390 ORTHO05D004950 2.0e-12 75.9 71 46.5
SMO145G0172 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 2.0e-12 75.9 73 43.8
Lalb_Chr22g0358881 Lupinus albus HOM05D004390 ORTHO05D004950 8.4e-11 70.5 39 74.4
Pp3c3_460 Physcomitrium patens HOM05D004390 ORTHO05D004950 8.7e-08 60.5 73 34.2
SMO197G0059 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 3.3e-07 58.5 62 43.5


User provided reference genes

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