Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1983.8 1014 100.0
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1496.9 1016 75.9
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1485.7 1016 75.8
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1465.7 1027 73.3
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1450.3 1016 73.3
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1444.1 1015 73.8
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1429.1 1010 72.4
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1427.9 1008 72.6
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1427.5 1010 72.9
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1427.2 1007 72.9
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1427.2 1017 73.0
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1416.0 1037 71.5
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1415.6 1020 72.3
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1412.1 1037 71.2
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1411.7 1009 72.0
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1411.0 1019 71.2
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1409.0 1015 71.7
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1407.9 1014 71.9
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1406.3 1031 70.8
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1405.6 1011 71.6
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1404.8 1036 71.0
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1402.9 1013 71.7
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1401.0 1013 71.6
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1399.0 1026 71.4
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1397.9 1025 71.4
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1397.5 1011 71.2
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1396.7 1013 71.5
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1396.3 1031 70.6
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1395.6 1008 71.6
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1395.6 1022 70.9
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1392.9 1022 71.1
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1390.2 1015 70.9
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1388.2 1010 71.2
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1384.0 1022 70.1
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1383.2 1025 70.6
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1382.1 1031 69.9
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1380.5 1021 70.6
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1375.9 1014 70.2
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1370.5 1020 69.7
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1369.8 1026 70.6
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1367.4 1064 68.0
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1365.9 1036 69.5
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1365.9 1036 69.5
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1365.5 1020 69.5
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1362.8 1033 69.5
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1362.4 1053 68.4
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1361.3 1034 69.2
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1360.9 960 72.7
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1358.2 1011 70.6
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1357.4 1024 69.5
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1357.0 1024 69.9
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1357.0 1038 69.6
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1357.0 928 75.3
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1355.9 1031 68.6
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1355.1 1036 68.7
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1354.7 1037 69.5
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1352.0 1037 69.8
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1348.6 1016 70.1
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1347.8 1037 69.7
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1347.8 1011 69.2
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1347.0 1036 69.1
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1346.3 1011 69.8
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1345.9 1016 68.8
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1345.9 1019 69.7
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1344.7 1022 68.8
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1342.4 1043 68.6
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1342.4 990 69.9
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1342.0 1028 68.6
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1341.6 1016 70.0
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1341.3 1041 67.8
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1337.0 1026 68.0
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1334.3 1016 68.3
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1328.5 1062 66.1
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1323.9 1011 68.2
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1323.1 1020 68.2
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1322.0 1049 66.5
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1319.7 1011 68.7
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1318.9 1011 68.1
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1316.2 1013 68.8
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1313.1 1009 67.4
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1312.7 1022 66.9
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1312.4 1021 67.6
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1312.4 1018 68.1
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1308.1 1009 67.9
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1304.7 1029 66.4
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1302.3 1010 67.6
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1296.6 1025 65.7
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1294.3 1014 67.8
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1292.7 1019 67.9
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1289.6 1029 65.6
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1288.9 1000 66.9
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1288.5 1019 67.7
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1286.2 1026 65.4
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1283.5 1014 66.8
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1283.1 1014 67.5
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1278.8 1018 66.6
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1276.2 1027 66.1
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1271.1 1012 65.0
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1269.6 1028 66.0
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1269.2 1028 66.0
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1258.8 1024 65.9
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1250.7 1035 64.0
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1250.7 1019 65.6
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1249.2 1008 64.6
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1249.2 996 66.0
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1244.6 896 71.8
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1243.8 1003 66.6
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1243.4 900 71.7
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1240.7 1010 66.0
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1236.5 1016 65.0
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1231.5 933 70.5
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1223.8 1008 65.6
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1223.8 997 65.5
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1222.6 1026 63.9
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1219.1 1010 64.8
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1217.2 1041 62.3
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1208.7 1026 64.2
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1199.1 1016 63.0
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1183.7 1007 63.0
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1176.0 1034 62.7
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1152.9 937 64.8
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1152.9 993 62.8
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1150.2 1011 61.5
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1139.0 1037 59.6
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1136.7 1037 61.4
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1130.9 1056 59.1
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1126.7 1043 60.2
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 6.2e-311 1070.8 874 64.6
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 3.2e-291 1005.4 885 60.2
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 2.2e-284 982.6 1022 56.8
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 1.0e-276 957.2 832 61.7
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 3.8e-276 955.3 1000 53.7
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 5.5e-275 951.4 807 66.2
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 3.4e-269 932.2 1009 53.5
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 4.4e-264 915.2 757 65.9
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 4.8e-255 885.2 1039 50.0
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 1.2e-253 880.6 720 66.4
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.6e-245 853.6 986 49.3
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.7e-242 842.0 983 49.1
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 9.8e-240 834.3 1025 47.8
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 9.5e-235 817.8 834 54.3
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 1.4e-230 803.9 832 54.6
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 6.6e-204 715.3 916 46.0
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 3.5e-197 693.0 720 58.3
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 1.1e-190 671.4 659 57.2
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 6.0e-189 665.6 822 50.5
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 6.2e-170 602.4 576 57.1
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 2.0e-168 597.4 955 40.0
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 5.1e-148 529.6 612 51.5
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 5.1e-148 529.6 659 49.0
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 2.6e-144 517.3 1155 33.9
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.1e-142 511.9 614 50.0
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 1.1e-121 442.2 635 45.5
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 7.7e-120 436.0 386 60.4
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.7e-106 391.7 281 73.0
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 4.0e-100 370.5 549 41.9
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.3e-95 354.8 306 61.4
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 7.3e-94 349.7 240 76.2
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 6.8e-84 316.6 272 62.9
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 1.2e-72 279.3 1094 28.8
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 1.5e-67 262.3 280 55.0
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 1.3e-50 206.1 522 29.3
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 2.9e-50 204.9 217 50.2
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 1.0e-47 196.4 928 24.2
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 8.7e-47 193.4 179 55.3
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.3e-46 191.0 229 43.2
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 3.3e-38 164.9 149 57.0
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 8.2e-37 160.2 148 56.1
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 3.1e-36 158.3 136 55.1
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 2.0e-35 155.6 187 48.1
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 3.1e-28 131.7 128 51.6
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.5e-22 112.8 96 53.1
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.5e-22 112.8 96 53.1
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 9.7e-22 110.2 112 49.1
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 3.4e-14 85.1 63 73.0
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 4.8e-13 81.3 61 70.5
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 1.1e-09 70.1 66 51.5


User provided reference genes

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