Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 0.0e+00 3654.8 1836 100.0
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 0.0e+00 2291.5 1858 64.0
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 0.0e+00 2069.3 1871 58.4
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 2016.5 1852 58.7
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 0.0e+00 2016.1 1859 57.7
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 2012.3 1841 59.1
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 0.0e+00 1988.8 2068 52.8
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 0.0e+00 1978.8 1866 56.9
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 0.0e+00 1974.1 1858 56.9
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 0.0e+00 1956.0 1864 57.0
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1925.2 1862 56.5
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 0.0e+00 1920.6 1854 55.2
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 0.0e+00 1916.0 1887 55.6
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 0.0e+00 1902.1 1880 54.0
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 0.0e+00 1887.5 1692 59.2
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 0.0e+00 1882.8 1848 55.0
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 0.0e+00 1876.7 1859 55.6
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 0.0e+00 1858.2 1875 54.3
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 0.0e+00 1839.7 1866 53.9
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 0.0e+00 1832.4 1846 54.0
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 0.0e+00 1827.8 1850 53.6
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1823.1 1855 53.6
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 0.0e+00 1820.8 1855 53.5
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 0.0e+00 1815.4 1854 53.0
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 0.0e+00 1811.2 1856 53.3
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1798.1 1859 52.8
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 0.0e+00 1790.8 1850 53.3
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 0.0e+00 1787.3 1854 52.7
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 0.0e+00 1784.6 1857 51.9
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 0.0e+00 1783.1 1866 51.7
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 0.0e+00 1768.8 1844 52.1
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1765.0 1868 52.9
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1760.3 1868 52.9
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 0.0e+00 1760.0 1848 52.4
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 0.0e+00 1745.7 1851 52.9
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1745.7 1833 52.6
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 0.0e+00 1743.0 1855 52.0
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 0.0e+00 1739.9 1851 52.2
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 0.0e+00 1734.5 1913 50.0
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 0.0e+00 1731.8 1824 51.9
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 0.0e+00 1726.5 1845 51.9
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 0.0e+00 1724.9 1741 53.1
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 0.0e+00 1723.0 1936 50.6
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 0.0e+00 1721.1 1854 51.9
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 0.0e+00 1720.3 1858 50.3
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1719.9 1855 52.0
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1719.1 1857 51.6
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 0.0e+00 1712.2 1853 50.9
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1707.2 1855 51.8
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 0.0e+00 1706.0 1854 51.2
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 0.0e+00 1703.7 1879 51.0
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 0.0e+00 1703.7 1855 51.6
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 0.0e+00 1701.4 1755 52.1
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 0.0e+00 1694.9 1888 50.6
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 0.0e+00 1692.9 1851 51.7
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 0.0e+00 1686.0 1853 51.0
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 0.0e+00 1684.1 1847 51.2
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 0.0e+00 1682.5 1525 59.1
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1681.8 1847 50.3
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 0.0e+00 1680.2 1839 50.3
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1672.5 1847 50.1
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 0.0e+00 1671.0 1860 49.7
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1669.8 1560 57.1
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 0.0e+00 1661.7 1856 50.2
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1659.0 1853 49.9
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1628.2 1858 49.0
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 0.0e+00 1590.9 1761 49.9
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 0.0e+00 1571.6 1853 48.0
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1552.7 1547 53.5
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 0.0e+00 1537.3 1667 51.5
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 0.0e+00 1531.9 1610 50.7
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 0.0e+00 1524.6 1866 46.5
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 0.0e+00 1394.8 1881 42.9
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 0.0e+00 1365.1 1159 62.5
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 0.0e+00 1320.4 1437 50.5
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 0.0e+00 1293.1 1429 50.2
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 0.0e+00 1241.1 1501 46.6
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 0.0e+00 1162.5 1067 59.6
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 0.0e+00 1135.9 1018 59.4
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 0.0e+00 1095.5 1927 37.0
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 0.0e+00 1080.9 958 59.6
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 1.5e-310 1070.5 1745 39.0
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.6e-309 1067.0 1406 44.0
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 4.9e-298 1028.9 1364 43.8
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 1.7e-274 950.7 1006 53.6
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 1.1e-265 921.4 1481 40.6
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 3.4e-259 899.8 797 60.1
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 3.8e-242 843.2 809 58.0
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 9.1e-212 742.3 905 47.3
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 2.9e-202 710.7 518 71.2
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 3.7e-197 693.7 757 53.6
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 1.2e-168 599.0 1516 30.3
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 1.3e-146 525.8 407 66.3
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 2.1e-144 518.5 410 65.9
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 4.3e-137 494.2 627 44.3
Haze_08368 Corylus avellana HOM05D003893 ORTHO05D005167 7.4e-137 493.4 488 56.4
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.0e-133 483.0 410 64.4
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 2.1e-131 475.3 397 62.5
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 4.3e-129 467.6 432 60.6
SalBow1G6370 Salvia bowleyana HOM05D003893 ORTHO05D005167 1.6e-123 449.1 602 42.9
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 4.4e-121 441.0 568 43.5
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 7.7e-118 430.3 311 72.0
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 5.5e-116 424.1 337 65.6
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 1.7e-109 402.5 540 42.6
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 2.7e-99 368.6 281 68.0
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 1.8e-95 355.9 486 42.4
ATR0665G055 Amborella trichopoda HOM05D003893 ORTHO05D005167 3.0e-90 338.6 475 40.4
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 8.9e-90 337.0 594 36.2
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 6.6e-85 320.9 369 46.9
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 2.5e-84 318.9 310 57.1
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 8.9e-82 310.5 491 38.5
Haze_08367 Corylus avellana HOM05D003893 ORTHO05D005167 3.2e-79 302.0 333 52.3
SEGI_27963 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 9.5e-76 290.4 510 34.5
Cpa.g.sc2698.1 Carica papaya HOM05D003893 ORTHO05D005167 1.4e-74 286.6 178 79.8
CDE12G0573 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 1.8e-74 286.2 178 78.7
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 5.2e-74 284.6 403 40.9
Os03g0100500 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 1.3e-72 280.0 215 67.0
Haze_08366 Corylus avellana HOM05D003893 ORTHO05D005167 2.9e-72 278.9 253 53.8
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 5.2e-66 258.1 572 31.5
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 1.1e-63 250.4 378 38.9
SMO364G0317 Selaginella moellendorffii HOM05D003893 ORTHO05D005167 3.1e-58 232.3 177 63.8
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 3.8e-56 225.3 784 26.4
CBR_g21120 Chara braunii HOM05D003893 ORTHO05D005167 1.0e-53 217.2 934 24.5
Psat7g156960 Pisum sativum HOM05D003893 ORTHO05D005167 3.9e-53 215.3 372 38.4
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 1.1e-50 207.2 674 27.0
CDE12G0397 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 1.2e-49 203.8 400 35.5
VMungo0251G2570 Vigna mungo HOM05D003893 ORTHO05D005167 1.2e-46 193.7 138 70.3
VMungo0251G2254 Vigna mungo HOM05D003893 ORTHO05D005167 2.7e-46 192.6 107 86.9
Rhsim11G0002000 Rhododendron simsii HOM05D003893 ORTHO05D005167 2.3e-45 189.5 111 85.6
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 3.3e-44 185.7 299 36.8
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 4.3e-44 185.3 188 53.7
arahy.Tifrunner.gnm1.ann1.NA56E9 Arachis hypogaea HOM05D003893 ORTHO05D005167 5.3e-42 178.3 143 62.9
COL.COLO4_04210 Corchorus olitorius HOM05D003893 ORTHO05D005167 7.1e-39 167.9 156 61.5
Nitab4.5_0026472g0010 Nicotiana tabacum HOM05D003893 ORTHO05D005167 3.9e-37 162.2 424 30.2
CBR_g21119 Chara braunii HOM05D000019 ORTHO05D005167 1.2e-33 150.6 211 38.4
Cre15.g637350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 1.1e-31 144.1 151 45.0
arahy.Tifrunner.gnm1.ann1.L0U5DT Arachis hypogaea HOM05D003893 ORTHO05D005167 9.6e-28 131.0 144 49.3
Os10g0142900 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 2.8e-27 129.4 179 41.3
Cpa.g.sc98.30 Carica papaya HOM05D003893 ORTHO05D005167 3.1e-26 125.9 158 47.5
Gohir.D02G139050 Gossypium hirsutum HOM05D003893 ORTHO05D005167 6.9e-26 124.8 82 73.2
Gorai.005G158100 Gossypium raimondii HOM05D003893 ORTHO05D005167 2.0e-25 123.2 82 73.2
arahy.Tifrunner.gnm1.ann1.FKEW18 Arachis hypogaea HOM05D003893 ORTHO05D005167 7.6e-25 121.3 158 45.6
Gohir.D11G202680 Gossypium hirsutum HOM05D003893 ORTHO05D005167 7.6e-25 121.3 82 70.7
SEGI_19363 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 1.3e-24 120.6 130 51.5
ATR0665G236 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.7e-24 120.2 162 42.0
arahy.Tifrunner.gnm1.ann1.LQQ75E Arachis hypogaea HOM05D003893 ORTHO05D005167 1.7e-24 120.2 90 66.7
arahy.Tifrunner.gnm1.ann1.MLK8WM Arachis hypogaea HOM05D003893 ORTHO05D005167 6.5e-24 118.2 90 66.7
Gohir.A11G196650 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.6e-22 113.6 83 67.5
arahy.Tifrunner.gnm1.ann1.9S00H1 Arachis hypogaea HOM05D003893 ORTHO05D005167 7.4e-20 104.8 74 68.9
Ah.07g199170 Amaranthus hybridus HOM05D003893 ORTHO05D005167 2.2e-19 103.2 52 94.2
Gorai.002G189000 Gossypium raimondii HOM05D003893 ORTHO05D047700 1.2e-14 87.4 58 70.7
SEGI_09425 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 1.2e-14 87.4 173 37.0
COL.COLO4_00031 Corchorus olitorius HOM05D003893 ORTHO05D005167 8.8e-13 81.3 132 38.6
C05p27230 Brassica napus HOM05D003893 ORTHO05D005167 3.3e-12 79.3 178 28.1
arahy.Tifrunner.gnm1.ann1.T8TVPL Arachis hypogaea HOM05D000826 ORTHO05D006448 4.3e-12 79.0 70 61.4
BcaC08g45749 Brassica carinata HOM05D003893 ORTHO05D021800 1.3e-11 77.4 119 32.8
Gohir.D01G152650 Gossypium hirsutum HOM05D003893 ORTHO05D047700 1.7e-11 77.0 58 63.8
arahy.Tifrunner.gnm1.ann1.QNR9EZ Arachis hypogaea HOM05D000826 ORTHO05D006448 4.8e-11 75.5 70 61.4
Ah.07g199150 Amaranthus hybridus HOM05D003893 ORTHO05D017260 6.3e-11 75.1 84 52.4
BolC4t23418H Brassica oleracea HOM05D003893 ORTHO05D021800 1.1e-10 74.3 174 27.0
arahy.Tifrunner.gnm1.ann1.BV66IC Arachis hypogaea HOM05D000826 ORTHO05D006448 5.3e-10 72.0 47 76.6
arahy.Tifrunner.gnm1.ann1.T26UD0 Arachis hypogaea HOM05D000826 ORTHO05D006448 5.3e-10 72.0 47 76.6
arahy.Tifrunner.gnm1.ann1.V6RYFZ Arachis hypogaea HOM05D000826 ORTHO05D006448 5.3e-10 72.0 47 76.6
arahy.Tifrunner.gnm1.ann1.AZ80GT Arachis hypogaea HOM05D000826 ORTHO05D006448 6.9e-10 71.6 47 76.6
arahy.Tifrunner.gnm1.ann1.UB4SVV Arachis hypogaea HOM05D003893 ORTHO05D005167 6.9e-10 71.6 62 62.9
BcaC09g49809 Brassica carinata HOM05D003893 ORTHO05D017260 1.2e-09 70.9 118 37.3
C01p32750 Brassica napus HOM05D003893 ORTHO05D017260 1.2e-09 70.9 118 37.3
BcaC05g26842 Brassica carinata HOM05D003893 ORTHO05D021800 4.5e-09 68.9 136 29.4
BolC5t31436H Brassica oleracea HOM05D003893 ORTHO05D021800 4.5e-09 68.9 136 29.4
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 6.5e-08 65.1 175 25.7
A01p25860 Brassica napus HOM05D003893 ORTHO05D017260 8.5e-08 64.7 107 38.3
SEGI_26572 Sequoiadendron giganteum HOM05D003893 ORTHO05D011582 3.2e-07 62.8 141 34.8
BolC6t38634H Brassica oleracea HOM05D003893 ORTHO05D021800 1.2e-06 60.8 161 24.8
CSS0024237 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 3.6e-06 59.3 135 31.1


User provided reference genes

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