Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 3.0e-108 395.2 202 100.0
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.5e-99 366.3 191 97.9
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 7.0e-89 330.9 184 90.2
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 9.1e-89 330.5 184 89.1
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 9.1e-89 330.5 184 89.1
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 3.5e-88 328.6 184 90.2
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 3.5e-88 328.6 184 88.6
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 3.5e-88 328.6 183 89.1
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 4.5e-88 328.2 184 89.7
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 4.5e-88 328.2 184 89.7
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 1.3e-87 326.6 184 87.5
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 6.5e-87 324.3 184 87.5
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 6.5e-87 324.3 184 88.0
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 8.5e-87 323.9 184 88.0
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 8.5e-87 323.9 184 88.0
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 1.1e-86 323.6 184 87.0
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 1.9e-86 322.8 184 88.0
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 2.5e-86 322.4 183 87.4
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 2.5e-86 322.4 185 87.0
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 2.5e-86 322.4 184 87.0
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 3.2e-86 322.0 184 87.0
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 3.2e-86 322.0 184 87.0
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 3.2e-86 322.0 184 87.0
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 3.2e-86 322.0 184 86.4
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 3.2e-86 322.0 185 87.6
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 3.2e-86 322.0 186 86.6
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 3.2e-86 322.0 184 87.0
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 4.2e-86 321.6 184 88.0
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 4.2e-86 321.6 184 86.4
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 5.5e-86 321.2 184 87.0
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 5.5e-86 321.2 184 87.0
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 7.2e-86 320.9 184 87.0
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 7.2e-86 320.9 184 86.4
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 1.2e-85 320.1 184 86.4
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.6e-85 319.7 184 87.0
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 1.6e-85 319.7 185 87.0
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 2.1e-85 319.3 183 86.3
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 2.1e-85 319.3 183 86.9
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 3.6e-85 318.5 184 87.0
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 4.7e-85 318.2 184 86.4
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 4.7e-85 318.2 184 86.4
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 4.7e-85 318.2 184 84.8
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 6.1e-85 317.8 183 85.8
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 6.1e-85 317.8 184 86.4
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 6.1e-85 317.8 184 86.4
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 6.1e-85 317.8 184 86.4
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 6.1e-85 317.8 184 86.4
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 6.1e-85 317.8 179 87.7
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 6.1e-85 317.8 181 86.7
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 6.1e-85 317.8 181 87.3
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 6.1e-85 317.8 181 87.3
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 8.0e-85 317.4 184 84.2
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 8.0e-85 317.4 184 86.4
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 1.0e-84 317.0 178 88.2
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 1.0e-84 317.0 178 88.2
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 1.0e-84 317.0 178 88.2
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 1.0e-84 317.0 178 88.2
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 1.0e-84 317.0 178 88.2
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 1.0e-84 317.0 185 84.3
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 1.4e-84 316.6 184 84.8
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 1.4e-84 316.6 182 86.3
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 1.4e-84 316.6 189 83.1
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 1.8e-84 316.2 178 88.2
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 1.8e-84 316.2 178 88.2
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 1.8e-84 316.2 188 82.4
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 1.8e-84 316.2 184 85.3
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 2.3e-84 315.8 189 82.5
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 2.3e-84 315.8 184 85.9
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 4.0e-84 315.1 180 86.7
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 4.0e-84 315.1 178 87.1
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 4.0e-84 315.1 181 86.2
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 4.0e-84 315.1 179 87.2
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 4.0e-84 315.1 178 88.2
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 4.0e-84 315.1 181 86.2
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 5.2e-84 314.7 185 84.9
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 5.2e-84 314.7 182 85.7
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 6.8e-84 314.3 184 84.8
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 6.8e-84 314.3 182 85.7
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 8.8e-84 313.9 178 87.6
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 8.8e-84 313.9 182 85.7
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 8.8e-84 313.9 181 85.6
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 8.8e-84 313.9 178 87.1
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 1.2e-83 313.5 186 82.8
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 1.2e-83 313.5 183 85.2
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 1.5e-83 313.2 188 84.0
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 1.5e-83 313.2 182 84.1
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 2.0e-83 312.8 181 86.2
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 2.0e-83 312.8 180 86.1
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 2.0e-83 312.8 183 84.7
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 2.0e-83 312.8 178 87.6
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 2.6e-83 312.4 188 84.0
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 2.6e-83 312.4 188 83.5
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 2.6e-83 312.4 188 83.5
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 3.4e-83 312.0 182 86.3
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 3.4e-83 312.0 185 84.9
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 7.5e-83 310.8 183 84.2
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 1.3e-82 310.1 180 86.7
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 2.2e-82 309.3 185 82.7
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 2.8e-82 308.9 181 84.5
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 8.3e-82 307.4 183 83.1
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 4.1e-81 305.1 178 85.4
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 4.1e-81 305.1 178 85.4
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 4.1e-81 305.1 182 83.0
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 7.0e-81 304.3 180 84.4
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 3.5e-80 302.0 184 83.2
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 4.5e-80 301.6 194 80.4
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 4.5e-80 301.6 182 81.9
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 1.5e-78 296.6 178 83.7
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 3.3e-78 295.4 172 84.3
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 7.2e-78 294.3 176 81.8
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.2e-77 293.5 223 69.1
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 1.6e-77 293.1 181 79.6
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 5.7e-75 284.6 181 79.0
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 3.7e-74 282.0 164 82.9
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 1.5e-70 270.0 164 81.7
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 4.7e-69 265.0 179 76.0
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 3.7e-66 255.4 176 72.7
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 6.4e-66 254.6 179 73.2
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 6.4e-66 254.6 182 74.2
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 6.4e-58 228.0 178 64.6
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 8.3e-58 227.6 130 85.4
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 5.4e-57 224.9 183 63.4
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 7.3e-54 214.5 184 63.0
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 6.2e-53 211.5 183 60.1
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 4.0e-52 208.8 109 98.2
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 2.4e-44 183.0 103 87.4
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 2.0e-43 179.9 219 50.2
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 4.4e-43 178.7 107 82.2
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 6.0e-40 168.3 202 50.0
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 3.3e-38 162.5 161 57.1
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 5.6e-38 161.8 82 95.1
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.8e-36 156.8 85 89.4
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 9.0e-36 154.5 80 92.5
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 2.0e-35 153.3 80 91.2
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 1.4e-33 147.1 125 62.4
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 6.9e-28 128.3 88 68.2
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 2.2e-18 96.7 70 67.1
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 1.4e-17 94.0 50 88.0
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 2.1e-16 90.1 50 86.0
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 1.3e-15 87.4 52 78.8
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 3.9e-15 85.9 50 78.0
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 5.7e-14 82.0 52 65.4
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 7.4e-14 81.6 56 69.6


User provided reference genes

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