Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 4.4e-46 187.6 93 100.0
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 4.6e-43 177.6 89 97.8
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 5.2e-39 164.1 90 88.9
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 5.2e-39 164.1 90 88.9
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 5.2e-39 164.1 90 88.9
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 5.2e-39 164.1 90 88.9
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 5.2e-39 164.1 90 88.9
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 6.8e-39 163.7 90 91.1
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 6.8e-39 163.7 90 91.1
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 8.9e-39 163.3 90 88.9
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 8.9e-39 163.3 90 88.9
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 8.9e-39 163.3 90 90.0
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 8.9e-39 163.3 90 90.0
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 8.9e-39 163.3 90 91.1
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 8.9e-39 163.3 90 91.1
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 1.2e-38 162.9 90 88.9
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 1.2e-38 162.9 90 88.9
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.5e-38 162.5 82 95.1
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 1.5e-38 162.5 90 88.9
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 1.5e-38 162.5 90 88.9
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 1.5e-38 162.5 90 87.8
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 1.5e-38 162.5 90 88.9
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 1.5e-38 162.5 90 88.9
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 2.0e-38 162.2 90 88.9
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 2.0e-38 162.2 90 88.9
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 2.0e-38 162.2 90 88.9
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 2.0e-38 162.2 90 86.7
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 2.0e-38 162.2 90 86.7
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 2.0e-38 162.2 90 88.9
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 2.0e-38 162.2 90 88.9
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 2.0e-38 162.2 90 88.9
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 2.0e-38 162.2 90 87.8
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 2.0e-38 162.2 90 88.9
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 2.0e-38 162.2 90 87.8
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 2.0e-38 162.2 90 88.9
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 2.6e-38 161.8 90 88.9
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 2.6e-38 161.8 90 88.9
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 2.6e-38 161.8 90 87.8
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 2.6e-38 161.8 90 88.9
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 2.6e-38 161.8 90 88.9
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 2.6e-38 161.8 90 88.9
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 2.6e-38 161.8 90 88.9
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 2.6e-38 161.8 90 88.9
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 3.4e-38 161.4 90 87.8
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 3.4e-38 161.4 90 86.7
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 3.4e-38 161.4 90 87.8
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 3.4e-38 161.4 87 93.1
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 3.4e-38 161.4 90 88.9
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 4.4e-38 161.0 90 86.7
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 4.4e-38 161.0 90 87.8
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 4.4e-38 161.0 90 87.8
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 4.4e-38 161.0 90 87.8
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 4.4e-38 161.0 90 87.8
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 4.4e-38 161.0 90 87.8
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 4.4e-38 161.0 90 87.8
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 4.4e-38 161.0 90 87.8
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 4.4e-38 161.0 90 87.8
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 4.4e-38 161.0 90 86.7
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 4.4e-38 161.0 90 87.8
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 5.8e-38 160.6 90 87.8
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 5.8e-38 160.6 90 87.8
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 5.8e-38 160.6 90 87.8
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 5.8e-38 160.6 90 87.8
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 5.8e-38 160.6 90 87.8
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 5.8e-38 160.6 90 86.7
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 5.8e-38 160.6 90 87.8
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 5.8e-38 160.6 90 87.8
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 7.5e-38 160.2 90 88.9
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 7.5e-38 160.2 90 87.8
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 7.5e-38 160.2 90 86.7
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 7.5e-38 160.2 90 86.7
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 9.8e-38 159.8 90 87.8
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 9.8e-38 159.8 90 86.7
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 9.8e-38 159.8 90 86.7
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 9.8e-38 159.8 90 86.7
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 9.8e-38 159.8 90 86.7
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 1.3e-37 159.5 90 87.8
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.3e-37 159.5 90 86.7
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 1.3e-37 159.5 90 86.7
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 1.3e-37 159.5 90 86.7
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 1.3e-37 159.5 90 86.7
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 1.7e-37 159.1 90 86.7
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 1.7e-37 159.1 90 85.6
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 1.7e-37 159.1 90 86.7
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 1.7e-37 159.1 90 86.7
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 1.7e-37 159.1 90 86.7
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 1.7e-37 159.1 90 85.6
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 2.2e-37 158.7 88 88.6
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 2.2e-37 158.7 90 85.6
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 2.2e-37 158.7 90 85.6
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 2.2e-37 158.7 90 85.6
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 2.2e-37 158.7 90 85.6
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 2.9e-37 158.3 90 85.6
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 2.9e-37 158.3 90 85.6
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 2.9e-37 158.3 90 85.6
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 3.7e-37 157.9 90 84.4
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 3.7e-37 157.9 90 85.6
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 3.7e-37 157.9 90 86.7
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 3.7e-37 157.9 90 86.7
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 6.4e-37 157.1 90 85.6
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 8.3e-37 156.8 90 85.6
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 8.3e-37 156.8 90 83.3
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 8.3e-37 156.8 90 85.6
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 8.3e-37 156.8 90 84.4
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 8.3e-37 156.8 90 85.6
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 1.4e-36 156.0 90 83.3
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 1.4e-36 156.0 90 84.4
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 1.9e-36 155.6 90 84.4
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 1.9e-36 155.6 90 85.6
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 4.1e-36 154.5 90 83.3
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 7.0e-36 153.7 90 84.4
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 2.0e-35 152.1 90 83.3
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 2.7e-35 151.8 90 83.3
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 7.8e-35 150.2 90 83.3
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 1.3e-34 149.4 90 83.3
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 1.7e-34 149.1 90 82.2
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 2.3e-34 148.7 75 97.3
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 3.0e-34 148.3 90 82.2
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 6.6e-34 147.1 90 82.2
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 1.1e-33 146.4 90 78.9
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 5.6e-33 144.1 74 93.2
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 1.6e-32 142.5 90 80.0
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 6.2e-32 140.6 85 80.0
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 6.8e-31 137.1 81 84.0
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 3.4e-30 134.8 75 86.7
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 4.4e-30 134.4 79 79.7
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 4.4e-30 134.4 90 73.3
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 3.5e-27 124.8 82 69.5
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 7.8e-27 123.6 65 89.2
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 9.2e-20 100.1 60 81.7
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.3e-18 96.3 60 81.7
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 9.6e-17 90.1 80 62.5
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 1.1e-15 86.7 50 80.0
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 1.8e-15 85.9 47 85.1
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 3.4e-14 81.6 52 67.3
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 1.5e-09 66.2 39 84.6
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 4.0e-07 58.2 90 43.3


User provided reference genes

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