Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 0.0e+00 2484.9 1326 100.0
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 0.0e+00 1573.5 1367 62.5
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1516.5 1352 60.7
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 0.0e+00 1475.3 1368 60.3
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1457.2 1362 59.0
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 0.0e+00 1452.2 1368 59.1
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 0.0e+00 1438.3 1339 59.3
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 0.0e+00 1435.2 1364 58.9
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 0.0e+00 1417.9 1365 58.6
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 0.0e+00 1416.4 1362 58.0
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1406.3 1365 58.5
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 0.0e+00 1402.5 1364 58.4
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 0.0e+00 1402.1 1362 58.1
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1394.4 1364 58.1
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 0.0e+00 1380.9 1365 57.0
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1376.3 1364 56.2
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1367.1 1341 58.0
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 0.0e+00 1355.1 1330 58.0
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1352.4 1372 55.0
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 0.0e+00 1350.9 1360 55.8
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 0.0e+00 1346.6 1403 55.3
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 0.0e+00 1340.1 1499 52.4
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1330.5 1326 56.3
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 0.0e+00 1328.9 1455 53.5
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 0.0e+00 1322.0 1359 55.5
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 0.0e+00 1316.2 1359 55.1
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 0.0e+00 1310.4 1474 52.7
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 0.0e+00 1290.4 1346 55.1
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 0.0e+00 1289.6 1372 53.6
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 0.0e+00 1276.5 1332 53.4
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1257.7 1366 51.6
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1245.7 1363 52.6
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 0.0e+00 1244.6 1337 51.8
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 0.0e+00 1241.9 1337 52.4
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 0.0e+00 1234.9 1409 52.2
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1229.9 1359 52.6
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 0.0e+00 1229.2 1377 51.6
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 0.0e+00 1221.5 1400 52.7
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 0.0e+00 1214.9 1429 49.4
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 0.0e+00 1214.5 1365 52.2
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 0.0e+00 1213.0 1345 51.6
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1209.9 1324 51.4
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 0.0e+00 1207.6 1358 52.1
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1203.3 1347 51.5
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 0.0e+00 1203.0 1356 51.0
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 0.0e+00 1201.0 1362 51.6
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1199.1 1350 51.2
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 0.0e+00 1195.3 1349 50.8
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1193.7 1358 50.1
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1192.9 1355 50.9
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 0.0e+00 1190.6 1371 50.7
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 0.0e+00 1189.1 1355 50.6
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 0.0e+00 1186.8 1351 50.9
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 0.0e+00 1185.6 1394 49.1
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1181.0 1368 50.2
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 0.0e+00 1179.5 1350 51.7
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 0.0e+00 1178.3 1351 50.0
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1176.8 1407 49.5
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 0.0e+00 1174.8 1383 50.4
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1174.1 1348 50.8
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 0.0e+00 1172.1 1436 48.3
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1171.0 1407 49.3
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 0.0e+00 1170.2 1356 50.0
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 0.0e+00 1169.8 1347 50.0
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1169.8 1390 49.5
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 0.0e+00 1169.1 1357 49.5
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1168.3 1351 49.9
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 0.0e+00 1167.1 1329 50.5
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1164.8 1350 50.1
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 0.0e+00 1162.9 1349 50.0
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 0.0e+00 1159.8 1420 49.4
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1159.4 1409 49.0
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1159.1 1355 50.0
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1159.1 1355 50.0
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 0.0e+00 1159.1 1355 50.0
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1157.9 1342 50.7
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 0.0e+00 1156.7 1332 50.3
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1155.2 1342 50.7
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 0.0e+00 1154.4 1353 49.5
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 0.0e+00 1152.5 1367 50.6
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1148.3 1349 49.8
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 0.0e+00 1139.4 1327 49.1
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 0.0e+00 1138.3 1355 49.3
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1128.6 1334 49.3
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 0.0e+00 1115.5 1349 48.7
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 0.0e+00 1093.2 1392 49.4
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 8.2e-311 1070.8 1313 48.5
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 9.9e-309 1063.9 1044 57.6
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 6.9e-302 1041.2 1327 46.3
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 3.0e-297 1025.8 1341 47.4
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 5.3e-294 1015.0 1095 52.8
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 7.1e-291 1004.6 1255 48.2
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 1.8e-281 973.4 1291 46.2
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 5.5e-275 951.8 1358 43.6
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 8.0e-242 841.6 915 53.2
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 4.2e-235 819.3 708 64.1
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 3.4e-232 809.7 916 52.2
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 1.6e-213 747.7 846 52.6
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 1.6e-194 684.5 687 56.5
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.3e-188 664.8 830 49.4
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 7.4e-187 659.1 692 54.3
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 1.8e-185 654.4 922 45.6
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 3.4e-184 650.2 639 57.3
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 3.0e-180 637.1 760 50.7
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 1.5e-176 624.8 607 55.8
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.6e-162 578.2 807 44.6
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 2.2e-162 577.8 480 62.9
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 3.2e-158 563.9 1282 33.3
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 5.2e-140 503.4 507 53.8
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 4.4e-139 500.4 1340 29.6
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 5.0e-135 486.9 358 70.4
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 7.2e-134 483.0 759 40.4
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 6.8e-132 476.5 1330 28.9
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 2.8e-130 471.1 358 65.4
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 1.2e-125 455.7 1137 31.6
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 8.3e-122 443.0 1054 33.0
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 2.4e-121 441.4 387 59.7
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.9e-110 405.2 417 51.1
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.8e-109 401.4 678 36.6
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 1.3e-90 339.3 244 68.0
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 2.6e-83 315.1 439 40.5
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.1e-76 293.1 240 65.0
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 7.6e-75 287.0 326 48.5
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 1.3e-71 276.2 321 48.0
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 6.4e-66 257.3 371 45.0
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 5.3e-60 237.7 352 42.9
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 2.1e-53 215.7 223 51.6
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 9.1e-44 183.7 273 39.9
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 2.7e-40 172.2 250 40.0
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 1.7e-37 162.9 200 49.0
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 7.9e-32 144.1 301 36.2
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.3e-29 136.7 121 59.5
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 2.4e-28 132.5 124 55.6
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 1.6e-27 129.8 505 27.3
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 3.5e-27 128.6 470 24.0
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 5.5e-25 121.3 217 39.6
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 1.4e-23 116.7 463 27.4
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 1.4e-23 116.7 95 60.0
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 4.4e-22 111.7 167 43.1
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 2.0e-19 102.8 374 25.9
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.3e-18 100.1 406 27.6
TAR376G0051 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.8e-15 89.7 161 40.4
SEGI_37730 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 6.8e-15 87.8 284 26.8
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 3.4e-14 85.5 86 55.8
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 1.6e-11 76.6 70 55.7
TAR625G0866 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.5e-09 69.3 45 73.3
Sabra05G0049200 Salix brachista HOM05D005030 ORTHO05D006490 2.0e-06 59.7 96 40.6


User provided reference genes

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