Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 3.3e-121 438.3 213 100.0
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.2e-35 154.1 155 53.5
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 1.4e-34 150.6 150 52.0
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 4.0e-34 149.1 155 48.4
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.2e-33 147.5 155 49.7
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.2e-33 147.5 155 49.7
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 4.4e-33 145.6 155 49.0
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 4.4e-33 145.6 156 50.0
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 5.7e-33 145.2 153 49.0
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 7.5e-33 144.8 156 48.1
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 7.5e-33 144.8 155 46.5
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 9.8e-33 144.4 155 47.1
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 9.8e-33 144.4 155 48.4
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 1.3e-32 144.1 316 33.5
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 1.3e-32 144.1 154 47.4
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 1.3e-32 144.1 152 46.7
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 1.7e-32 143.7 315 32.7
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.7e-32 143.7 152 48.0
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 2.2e-32 143.3 316 32.6
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 2.2e-32 143.3 313 32.6
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 2.8e-32 142.9 207 40.6
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 2.8e-32 142.9 314 33.1
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.8e-32 142.9 163 46.6
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 3.7e-32 142.5 157 47.1
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 3.7e-32 142.5 157 47.1
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 3.7e-32 142.5 313 32.6
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 4.9e-32 142.1 155 47.7
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 4.9e-32 142.1 155 45.2
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 6.3e-32 141.7 204 41.7
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 6.3e-32 141.7 151 48.3
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 6.3e-32 141.7 158 44.9
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 8.3e-32 141.4 151 47.0
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 8.3e-32 141.4 312 32.7
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 8.3e-32 141.4 153 46.4
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 8.3e-32 141.4 158 45.6
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.1e-31 141.0 314 32.8
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 1.1e-31 141.0 154 47.4
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 1.4e-31 140.6 154 46.1
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 1.8e-31 140.2 150 48.7
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 1.8e-31 140.2 148 48.6
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 1.8e-31 140.2 155 46.5
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 1.8e-31 140.2 155 43.9
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 2.4e-31 139.8 307 33.6
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 2.4e-31 139.8 155 44.5
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 4.1e-31 139.0 153 44.4
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 5.4e-31 138.7 148 48.0
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 7.0e-31 138.3 156 44.2
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 9.2e-31 137.9 155 45.8
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 1.6e-30 137.1 155 45.8
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 1.6e-30 137.1 155 45.8
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 1.6e-30 137.1 308 32.1
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 1.6e-30 137.1 314 32.2
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 1.6e-30 137.1 156 44.9
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 1.6e-30 137.1 157 45.2
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 1.6e-30 137.1 151 48.3
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 2.0e-30 136.7 155 45.2
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 2.0e-30 136.7 154 46.8
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 2.0e-30 136.7 153 45.1
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 2.0e-30 136.7 149 45.6
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 2.7e-30 136.3 156 44.9
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 3.5e-30 136.0 315 31.1
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 4.5e-30 135.6 318 31.1
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 4.5e-30 135.6 155 44.5
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 5.9e-30 135.2 314 32.5
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 5.9e-30 135.2 154 44.2
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 7.7e-30 134.8 152 44.7
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 7.7e-30 134.8 207 40.1
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 7.7e-30 134.8 207 40.1
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 7.7e-30 134.8 207 38.6
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 7.7e-30 134.8 152 45.4
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 7.7e-30 134.8 152 45.4
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 7.7e-30 134.8 318 31.1
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 7.7e-30 134.8 309 31.7
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 7.7e-30 134.8 156 45.5
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 7.7e-30 134.8 317 32.5
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 7.7e-30 134.8 317 32.5
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 1.0e-29 134.4 154 43.5
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 1.3e-29 134.0 156 42.9
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 1.3e-29 134.0 156 45.5
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 1.3e-29 134.0 161 43.5
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.7e-29 133.7 155 43.2
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.7e-29 133.7 151 46.4
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 2.3e-29 133.3 310 32.3
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.3e-29 133.3 182 41.2
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 2.9e-29 132.9 207 38.2
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 2.9e-29 132.9 207 38.2
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 2.9e-29 132.9 207 38.2
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 3.8e-29 132.5 151 44.4
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 5.0e-29 132.1 210 39.0
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 5.0e-29 132.1 163 42.9
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 6.6e-29 131.7 207 39.1
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 8.6e-29 131.3 151 45.7
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 8.6e-29 131.3 160 41.9
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 8.6e-29 131.3 219 37.0
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 8.6e-29 131.3 209 37.8
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 1.5e-28 130.6 214 36.9
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 1.9e-28 130.2 157 42.0
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 3.3e-28 129.4 151 43.0
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 4.3e-28 129.0 135 48.9
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 5.6e-28 128.6 328 30.5
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 9.5e-28 127.9 156 41.7
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.6e-27 127.1 206 38.8
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 1.6e-27 127.1 152 42.8
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 3.6e-27 125.9 209 37.8
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 3.6e-27 125.9 213 36.6
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 8.0e-27 124.8 159 40.3
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 1.8e-26 123.6 210 38.6
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 5.2e-26 122.1 340 29.7
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 5.2e-26 122.1 297 32.0
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 8.9e-26 121.3 212 36.3
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 1.5e-25 120.6 173 39.3
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 2.6e-25 119.8 211 37.0
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 2.2e-24 116.7 231 33.3
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 2.9e-24 116.3 116 48.3
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 1.4e-23 114.0 118 48.3
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 1.8e-23 113.6 124 48.4
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 7.0e-23 111.7 123 48.0
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 9.2e-23 111.3 132 40.9
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 4.6e-22 109.0 121 48.8
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 1.3e-21 107.5 121 46.3
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 1.1e-20 104.4 122 45.9
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 4.3e-20 102.4 154 35.7
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 7.3e-20 101.7 121 43.0
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 9.5e-20 101.3 154 36.4
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 1.2e-19 100.9 121 43.8
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 1.6e-19 100.5 151 38.4
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.6e-19 100.5 121 42.1
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.6e-19 100.5 205 34.1
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 3.6e-19 99.4 220 34.1
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 8.0e-19 98.2 133 39.1
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 2.6e-17 93.2 68 64.7
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 9.8e-17 91.3 125 40.0
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 1.3e-16 90.9 245 30.2
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 5.4e-15 85.5 114 38.6
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 5.4e-15 85.5 69 55.1
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 7.8e-14 81.6 63 57.1
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 5.0e-13 79.0 86 44.2
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 8.6e-13 78.2 68 50.0
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 1.1e-12 77.8 71 50.7
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 1.1e-12 77.8 65 49.2
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 2.5e-12 76.6 71 47.9
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 4.3e-12 75.9 62 53.2
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 7.3e-12 75.1 69 50.7
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 1.2e-11 74.3 66 53.0
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 1.2e-11 74.3 66 53.0
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 6.2e-11 72.0 69 44.9
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 8.1e-11 71.6 63 49.2
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 8.1e-11 71.6 63 49.2
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 6.8e-10 68.6 152 33.6
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.2e-09 67.8 159 31.4
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 2.6e-09 66.6 45 60.0
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 2.6e-09 66.6 45 62.2
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 5.8e-09 65.5 108 38.0
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 9.8e-09 64.7 57 52.6
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 1.7e-08 63.9 45 57.8
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 3.7e-08 62.8 68 42.6
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 3.7e-08 62.8 68 42.6
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 3.7e-08 62.8 93 38.7
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 3.7e-08 62.8 93 38.7
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 3.7e-08 62.8 93 38.7
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 6.4e-08 62.0 45 55.6
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 6.4e-08 62.0 45 55.6
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.9e-07 60.5 61 47.5
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 2.4e-07 60.1 46 56.5
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 2.4e-07 60.1 181 27.1
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 3.2e-07 59.7 30 76.7
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.2e-06 57.8 117 33.3
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 6.0e-06 55.5 52 48.1


User provided reference genes

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