Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 0.0e+00 1567.4 799 100.0
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 0.0e+00 1118.6 812 71.1
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 0.0e+00 1116.3 799 72.1
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 0.0e+00 1079.3 779 70.7
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 3.5e-309 1064.7 812 68.0
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 4.6e-309 1064.3 812 68.0
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 1.3e-308 1062.8 805 67.5
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 1.7e-303 1045.8 798 67.3
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 5.4e-302 1040.8 804 66.3
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 8.6e-300 1033.5 797 66.1
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 1.4e-297 1026.2 802 66.2
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 3.4e-296 1021.5 796 66.5
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 7.6e-296 1020.4 798 65.8
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 2.9e-295 1018.5 794 66.6
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 1.4e-294 1016.1 789 66.5
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 4.2e-294 1014.6 796 64.9
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 6.0e-293 1010.7 810 64.1
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 2.3e-292 1008.8 804 66.0
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 2.5e-291 1005.4 797 65.4
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 9.6e-291 1003.4 800 64.8
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 2.8e-290 1001.9 803 64.4
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 3.6e-290 1001.5 795 64.9
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 1.1e-289 1000.0 760 67.6
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 3.1e-289 998.4 797 64.9
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 3.8e-287 991.5 760 67.1
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 3.8e-287 991.5 791 64.1
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 4.6e-285 984.6 791 64.5
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 1.7e-284 982.6 794 64.1
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 5.1e-284 981.1 805 64.2
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 1.6e-282 976.1 805 63.9
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 2.4e-281 972.2 805 63.5
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 2.6e-280 968.8 806 62.5
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 7.6e-280 967.2 805 63.6
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 9.9e-280 966.8 805 63.5
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 1.4e-278 963.0 807 63.3
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 9.3e-278 960.3 789 62.4
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 1.6e-277 959.5 810 63.3
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 7.9e-277 957.2 789 62.4
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 1.0e-276 956.8 794 63.6
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 3.9e-276 954.9 806 61.0
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.1e-275 953.4 854 60.1
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 1.9e-275 952.6 807 62.7
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 2.5e-275 952.2 805 61.1
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 5.6e-275 951.0 825 61.6
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 9.6e-275 950.3 791 62.6
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 1.3e-274 949.9 800 62.2
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 1.8e-273 946.0 791 63.0
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 3.5e-269 931.8 800 62.0
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 6.0e-269 931.0 802 60.6
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 7.9e-269 930.6 793 61.0
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 2.3e-268 929.1 809 61.2
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 3.0e-268 928.7 802 60.5
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 3.9e-268 928.3 791 62.2
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 8.7e-268 927.2 802 60.5
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 3.3e-267 925.2 802 60.5
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 3.7e-266 921.8 796 60.7
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 2.4e-265 919.1 807 60.7
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 6.9e-265 917.5 796 61.3
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 6.9e-265 917.5 791 60.8
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 1.5e-264 916.4 805 61.1
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 4.5e-264 914.8 793 61.0
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 2.2e-263 912.5 797 60.7
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 3.8e-263 911.8 787 60.9
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 6.5e-263 911.0 781 60.8
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 1.4e-262 909.8 796 60.9
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 5.5e-262 907.9 802 59.5
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 8.7e-260 900.6 817 59.0
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 5.7e-259 897.9 813 59.0
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 1.6e-258 896.3 806 57.9
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 2.2e-258 896.0 720 64.9
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 2.6e-256 889.0 804 57.8
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 4.5e-256 888.3 766 60.8
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 2.9e-255 885.6 791 60.1
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 5.0e-255 884.8 805 58.9
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.1e-254 883.6 794 58.6
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 1.6e-253 879.8 795 58.2
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 3.0e-252 875.5 796 58.2
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 5.7e-251 871.3 795 57.5
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 1.7e-250 869.8 810 57.8
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 2.2e-250 869.4 792 57.3
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 6.3e-250 867.8 815 57.1
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 6.3e-250 867.8 796 57.4
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 5.3e-249 864.8 811 58.4
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 3.4e-248 862.1 789 58.8
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 2.9e-247 859.0 796 56.9
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 2.9e-247 859.0 795 56.7
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 1.4e-246 856.7 799 57.1
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 1.8e-241 839.7 801 56.8
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 2.0e-240 836.3 803 57.0
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 7.7e-240 834.3 801 56.8
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 2.9e-239 832.4 798 56.9
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 2.9e-239 832.4 798 56.9
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 2.9e-239 832.4 798 56.9
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 3.6e-221 772.3 617 65.8
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 6.3e-218 761.5 799 52.7
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 2.3e-215 753.1 807 53.8
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 6.0e-200 701.8 650 56.2
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.0e-199 701.0 650 56.0
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 2.3e-196 689.9 645 58.3
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 3.4e-179 632.9 471 69.2
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 1.7e-170 604.0 856 45.3
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 6.6e-167 592.0 565 54.5
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 1.1e-164 584.7 469 64.4
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 5.8e-163 578.9 461 64.9
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 2.4e-156 557.0 465 61.7
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 9.0e-156 555.1 465 62.4
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 2.6e-155 553.5 466 62.4
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 1.7e-154 550.8 465 61.7
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 7.1e-153 545.4 458 62.7
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 9.3e-153 545.0 473 60.5
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 2.7e-152 543.5 461 60.3
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 2.7e-152 543.5 461 60.3
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 3.0e-151 540.0 737 44.9
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 6.7e-151 538.9 463 61.3
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 4.8e-149 532.7 463 60.9
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 3.4e-147 526.6 519 55.3
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 5.1e-143 512.7 458 59.6
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.9e-142 510.8 462 58.2
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 3.1e-140 503.4 453 58.9
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 6.9e-140 502.3 462 58.4
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 1.4e-137 494.6 462 57.4
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 7.2e-137 492.3 716 44.1
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 2.1e-136 490.7 414 62.1
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 2.0e-134 484.2 459 55.8
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 1.3e-130 471.5 755 42.0
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.3e-130 471.5 451 56.8
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 2.9e-130 470.3 466 56.0
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 7.2e-129 465.7 448 56.0
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 4.7e-128 463.0 453 55.4
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 3.0e-127 460.3 700 41.1
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 2.2e-125 454.1 453 55.4
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 1.1e-124 451.8 455 55.6
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 2.4e-124 450.7 455 55.4
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 7.7e-123 445.7 755 38.3
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 2.1e-120 437.6 468 53.0
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 5.9e-115 419.5 299 70.6
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 8.5e-114 415.6 462 52.2
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 1.3e-98 365.2 647 39.3
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 3.8e-98 363.6 314 58.9
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 8.6e-98 362.5 276 72.5
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 9.2e-92 342.4 464 42.2
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 7.5e-86 322.8 231 73.6
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 1.2e-78 298.9 197 79.7
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 1.4e-60 238.8 358 38.5
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 1.1e-57 229.2 358 42.2
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 1.1e-55 222.6 748 28.7
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 1.1e-52 212.6 147 68.0
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.4e-52 211.5 160 69.4
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.4e-52 211.5 160 69.4
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 2.4e-47 194.9 145 64.1
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 4.0e-47 194.1 138 70.3
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 2.6e-46 191.4 458 30.8
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.5e-36 158.3 157 56.7
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.1e-35 155.2 157 56.1
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 2.9e-29 134.8 88 69.3
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.9e-20 105.5 96 62.5
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 9.7e-17 93.2 70 60.0
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 4.8e-16 90.9 95 51.6
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.1e-11 75.5 54 64.8
SEGI_14927 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 4.8e-08 64.3 50 62.0
MD08G1099400 Malus domestica HOM05D031194 ORTHO05D029699 2.0e-06 58.9 97 39.2


User provided reference genes

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