Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 4.1e-194 681.4 394 100.0
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 1.6e-84 317.4 403 56.3
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 1.2e-79 301.2 391 51.4
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 2.3e-75 287.0 405 51.1
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 2.1e-73 280.4 377 56.5
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 1.4e-72 277.7 406 49.8
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 1.2e-71 274.6 393 46.3
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 1.2e-68 264.6 405 46.9
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 1.6e-68 264.2 406 49.3
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 2.0e-68 263.8 389 53.0
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 4.6e-68 262.7 409 49.4
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 1.0e-67 261.5 422 47.6
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 1.3e-67 261.2 404 47.5
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 1.9e-66 257.3 403 49.6
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 2.1e-65 253.8 420 46.9
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 3.6e-65 253.1 393 47.8
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 3.1e-64 250.0 418 41.6
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 1.5e-63 247.7 413 42.6
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 1.5e-63 247.7 406 41.6
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 2.6e-63 246.9 411 42.6
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 2.6e-63 246.9 404 43.1
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 4.4e-63 246.1 399 43.9
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 9.8e-63 245.0 420 41.4
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 3.7e-62 243.0 411 42.1
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 4.9e-62 242.7 408 41.7
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 8.3e-62 241.9 418 45.9
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 1.1e-61 241.5 395 46.8
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 3.5e-60 236.5 406 41.4
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 7.8e-60 235.3 426 44.8
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 1.7e-59 234.2 408 41.4
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.5e-58 230.3 407 40.5
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 2.5e-58 230.3 399 43.4
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 4.3e-58 229.6 406 41.6
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 4.3e-58 229.6 410 48.0
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 9.5e-58 228.4 407 40.5
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 2.1e-57 227.3 402 43.5
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 8.1e-57 225.3 423 45.6
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.1e-56 224.9 404 40.3
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 2.3e-56 223.8 396 42.2
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 8.9e-56 221.9 411 43.3
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 1.2e-55 221.5 402 44.8
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 1.2e-55 221.5 415 40.7
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 2.6e-55 220.3 407 43.0
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 4.4e-55 219.5 410 42.2
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 1.7e-54 217.6 342 44.4
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 1.7e-54 217.6 412 44.4
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 2.9e-54 216.9 423 43.0
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 3.7e-54 216.5 402 46.5
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 6.4e-54 215.7 407 44.2
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 8.3e-54 215.3 419 44.9
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 1.4e-53 214.5 343 42.9
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 1.9e-53 214.2 429 42.9
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 5.4e-53 212.6 403 38.2
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 5.4e-53 212.6 406 39.9
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 9.2e-53 211.8 405 39.8
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 1.6e-52 211.1 384 40.4
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 2.1e-52 210.7 402 41.0
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 3.5e-52 209.9 403 40.2
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 2.3e-51 207.2 401 39.4
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 3.0e-51 206.8 403 38.5
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 3.9e-51 206.5 287 48.1
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 1.5e-50 204.5 410 38.8
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 1.9e-50 204.1 389 38.6
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 3.3e-50 203.4 410 41.7
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 9.5e-50 201.8 403 40.0
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 2.8e-49 200.3 397 41.1
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 8.1e-49 198.7 424 39.4
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.4e-48 198.0 405 38.8
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.4e-48 198.0 409 38.9
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 2.4e-48 197.2 408 40.0
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 2.4e-48 197.2 423 42.8
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 4.0e-48 196.4 390 43.6
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 4.0e-48 196.4 407 38.8
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 6.8e-48 195.7 401 38.9
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 3.4e-47 193.4 390 43.3
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 4.4e-47 193.0 412 44.2
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 5.8e-47 192.6 409 42.1
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 1.7e-46 191.0 404 39.1
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.7e-46 191.0 412 44.9
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 4.9e-46 189.5 398 41.5
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 1.4e-45 188.0 410 41.5
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.9e-45 187.6 390 44.4
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 3.2e-45 186.8 392 38.0
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 1.2e-44 184.9 412 37.1
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 3.5e-44 183.3 447 38.9
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 2.3e-43 180.6 364 39.3
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 3.0e-43 180.3 405 38.3
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.5e-42 177.2 337 40.9
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 4.3e-42 176.4 405 36.0
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 1.2e-41 174.9 409 45.0
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 2.8e-41 173.7 419 37.0
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 4.7e-41 172.9 409 36.4
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 6.2e-41 172.6 339 38.3
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 5.3e-40 169.5 429 34.7
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 5.3e-40 169.5 427 37.0
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 2.0e-39 167.5 427 36.3
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 2.0e-39 167.5 427 36.3
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 2.0e-39 167.5 427 36.3
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 4.4e-39 166.4 386 39.4
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 1.3e-38 164.9 425 38.8
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 1.7e-38 164.5 429 36.8
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 1.7e-38 164.5 429 36.8
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 2.9e-38 163.7 420 36.9
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 8.4e-38 162.2 413 34.9
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 1.9e-37 161.0 350 38.6
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 1.9e-37 161.0 350 38.6
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 5.4e-37 159.5 405 39.5
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 2.7e-36 157.1 348 42.0
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 4.6e-36 156.4 227 45.4
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 4.6e-36 156.4 423 34.8
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 4.6e-36 156.4 423 34.8
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 4.6e-36 156.4 186 54.3
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 6.6e-35 152.5 435 34.0
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 6.6e-35 152.5 366 35.5
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 1.1e-34 151.8 401 36.9
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 1.5e-34 151.4 347 38.0
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 1.5e-34 151.4 347 38.0
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 1.9e-34 151.0 363 44.6
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 1.9e-34 151.0 403 35.7
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 5.6e-34 149.4 357 35.9
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 5.6e-34 149.4 203 48.3
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 5.6e-34 149.4 365 35.3
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 7.3e-34 149.1 283 44.2
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 2.8e-33 147.1 359 37.0
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 4.8e-33 146.4 408 35.5
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 3.1e-32 143.7 439 31.9
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 5.3e-32 142.9 410 36.8
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 6.9e-32 142.5 399 38.3
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 7.6e-31 139.0 344 37.8
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 2.9e-30 137.1 263 38.8
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 8.4e-30 135.6 344 34.9
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 4.2e-29 133.3 263 39.9
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 3.5e-28 130.2 405 32.1
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 1.5e-26 124.8 392 31.4
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 6.9e-24 115.9 417 34.3
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.3e-19 101.7 190 43.7
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 8.7e-19 99.0 403 30.3
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 1.0e-14 85.5 136 41.9
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 6.5e-14 82.8 216 36.1
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 1.3e-11 75.1 223 34.1
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 3.3e-10 70.5 154 42.9
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 9.7e-10 68.9 335 29.3
MBI10_g23168_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 6.9e-08 62.8 164 35.4
Actinidia37514 Actinidia chinensis HOM05D000378 ORTHO05D006084 7.7e-07 59.3 52 59.6


User provided reference genes

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