Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 1.2e-201 706.4 389 100.0
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 5.2e-165 584.7 394 82.7
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 2.6e-164 582.4 394 82.5
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 9.7e-164 580.5 393 81.7
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 7.0e-162 574.3 395 82.5
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 3.5e-161 572.0 394 81.7
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 1.9e-159 566.2 394 80.7
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 5.5e-159 564.7 394 81.0
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 2.1e-158 562.8 394 80.5
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 2.7e-158 562.4 394 79.7
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 2.8e-155 552.4 394 79.2
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 3.1e-154 548.9 394 77.7
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 7.0e-154 547.7 394 77.7
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 7.0e-154 547.7 394 77.7
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 9.1e-154 547.4 394 77.2
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 1.6e-153 546.6 394 78.2
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 3.5e-153 545.4 394 76.1
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 4.5e-153 545.0 394 77.2
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 4.5e-153 545.0 394 78.7
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.7e-152 543.1 393 75.8
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 2.3e-152 542.7 394 77.9
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 2.9e-152 542.3 394 77.9
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 3.8e-152 542.0 394 78.2
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 5.0e-152 541.6 409 75.8
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 5.0e-152 541.6 393 77.4
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 5.0e-152 541.6 394 78.2
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 6.6e-152 541.2 394 78.4
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.1e-151 540.4 394 77.7
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.1e-151 540.4 394 77.7
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 1.9e-151 539.7 404 77.7
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 2.5e-151 539.3 393 77.4
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.3e-151 538.9 394 77.4
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.3e-151 538.9 394 77.4
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 5.5e-151 538.1 394 77.9
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.6e-150 536.6 394 77.2
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 1.6e-150 536.6 394 76.9
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 2.1e-150 536.2 395 78.0
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 2.1e-150 536.2 393 76.3
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 4.7e-150 535.0 394 74.4
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.0e-149 533.9 393 75.3
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 1.8e-149 533.1 393 75.3
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 2.3e-149 532.7 394 75.6
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 3.0e-149 532.3 392 77.3
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 3.0e-149 532.3 394 77.2
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 5.2e-149 531.6 394 74.4
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 1.5e-148 530.0 394 76.9
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 7.5e-148 527.7 438 70.8
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 7.5e-148 527.7 394 74.6
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 2.2e-147 526.2 395 74.2
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 6.3e-147 524.6 394 71.1
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 2.4e-146 522.7 395 72.9
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 5.4e-146 521.5 397 74.3
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 2.0e-145 519.6 417 74.1
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 1.7e-144 516.5 395 75.4
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 2.5e-143 512.7 395 73.7
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 9.5e-143 510.8 392 74.0
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 1.2e-142 510.4 395 72.7
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 2.3e-141 506.1 392 67.6
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 3.1e-141 505.8 389 75.1
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 4.0e-141 505.4 394 70.1
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 5.2e-141 505.0 378 75.1
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 6.8e-141 504.6 394 68.3
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 6.8e-141 504.6 393 74.8
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 8.9e-141 504.2 394 66.5
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 1.2e-140 503.8 393 74.3
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 1.5e-140 503.4 398 73.6
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 2.0e-140 503.1 370 77.0
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 3.4e-140 502.3 394 67.8
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 4.4e-140 501.9 398 73.4
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 4.4e-140 501.9 393 68.2
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 4.4e-140 501.9 393 67.9
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 7.5e-140 501.1 392 73.7
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 4.9e-139 498.4 394 67.5
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 2.4e-138 496.1 370 77.3
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 3.2e-138 495.7 394 68.5
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 1.2e-137 493.8 389 67.6
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 3.5e-137 492.3 388 67.3
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 6.0e-137 491.5 394 74.1
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 7.8e-137 491.1 388 64.7
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 1.0e-136 490.7 409 71.1
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 3.0e-136 489.2 388 66.8
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 3.0e-136 489.2 388 66.8
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 3.0e-136 489.2 394 67.0
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 3.3e-135 485.7 390 73.3
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 4.7e-134 481.9 397 70.5
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.7e-131 473.4 394 71.1
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 1.7e-131 473.4 391 70.8
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 3.7e-131 472.2 400 70.0
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 1.0e-128 464.2 426 66.0
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 1.3e-128 463.8 377 66.6
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 1.5e-127 460.3 391 70.8
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 5.8e-124 448.4 358 68.4
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 1.2e-121 440.7 397 60.7
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 6.6e-120 434.9 387 61.0
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 4.0e-117 425.6 394 67.3
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 1.7e-115 420.2 367 68.9
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 3.8e-107 392.5 394 54.8
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 5.4e-106 388.7 287 78.4
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 1.3e-104 384.0 388 53.6
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 1.8e-101 373.6 376 57.7
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 2.6e-100 369.8 343 67.9
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 1.3e-94 350.9 395 49.4
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 2.1e-94 350.1 393 51.1
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 2.1e-89 333.6 393 51.9
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 2.7e-81 306.6 328 62.8
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 7.9e-81 305.1 243 65.4
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 1.1e-79 301.2 293 55.6
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 7.7e-76 288.5 373 46.9
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 5.3e-69 265.8 298 53.0
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 6.9e-69 265.4 383 52.5
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 2.5e-58 230.3 182 64.8
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 5.5e-58 229.2 182 64.8
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 7.5e-55 218.8 540 32.0
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 1.2e-52 211.5 291 46.4
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 1.2e-49 201.4 411 34.3
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 8.0e-49 198.7 151 73.5
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 1.1e-45 188.3 165 59.4
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 1.4e-45 188.0 122 80.3
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 1.4e-40 171.4 407 32.9
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 4.0e-40 169.9 121 73.6
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 4.0e-40 169.9 391 31.7
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 3.4e-39 166.8 205 49.8
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 2.9e-35 153.7 161 51.6
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 4.7e-33 146.4 91 79.1
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 2.9e-30 137.1 88 80.7
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 4.9e-30 136.3 125 64.8
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 4.9e-30 136.3 71 83.1
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 6.4e-30 136.0 113 61.1
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.5e-26 124.8 88 68.2
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 3.3e-26 123.6 71 87.3
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 4.7e-25 119.8 123 52.0
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 2.3e-24 117.5 148 60.8
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 2.6e-23 114.0 153 43.8
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 2.2e-22 110.9 98 58.2
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 2.9e-22 110.5 146 44.5
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 9.5e-18 95.5 80 66.2
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 2.8e-17 94.0 50 80.0
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 6.2e-17 92.8 63 63.5
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 2.7e-12 77.4 51 76.5
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 2.7e-12 77.4 46 84.8
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 1.7e-11 74.7 98 43.9
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 3.3e-10 70.5 44 79.5
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 9.5e-10 68.9 47 66.0
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 1.2e-09 68.6 38 86.8
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 8.1e-09 65.9 35 91.4


User provided reference genes

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