Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy549s001 Aquilegia oxysepala HOM05D001728 ORTHO05D004321 6.5e-83 310.8 175 100.0
Aqoxy7G00928 Aquilegia oxysepala HOM05D001728 ORTHO05D004321 5.4e-53 211.5 131 97.7
TAR624G0656 Trochodendron aralioides HOM05D001728 ORTHO05D004321 2.4e-29 132.9 130 54.6
TAR626G1627 Trochodendron aralioides HOM05D001728 ORTHO05D004321 2.0e-28 129.8 130 53.8
CAN.G790.54 Capsicum annuum HOM05D001728 ORTHO05D004321 7.3e-26 121.3 131 52.7
PSO135G0334 Papaver somniferum HOM05D001728 ORTHO05D004321 9.5e-26 120.9 134 50.7
PSO724G0814 Papaver somniferum HOM05D001728 ORTHO05D004321 1.6e-25 120.2 134 50.7
Solyc03g123660.3 Solanum lycopersicum HOM05D001728 ORTHO05D004321 3.6e-25 119.0 131 51.1
Sopen03g041430 Solanum pennellii HOM05D001728 ORTHO05D004321 3.6e-25 119.0 131 51.1
PGSC0003DMG400009150 Solanum tuberosum HOM05D001728 ORTHO05D004321 8.1e-25 117.9 127 52.0
vmacro18718 Vaccinium macrocarpon HOM05D001728 ORTHO05D004321 1.4e-24 117.1 133 49.6
vmacro18772 Vaccinium macrocarpon HOM05D001728 ORTHO05D004321 1.4e-24 117.1 133 49.6
Cfa003458 Carpinus fangiana HOM05D001728 ORTHO05D004321 3.1e-24 115.9 131 48.1
MBI19_g32874_MAGBIO Magnolia biondii HOM05D001728 ORTHO05D004321 3.1e-24 115.9 128 48.4
Nitab4.5_0006966g0050 Nicotiana tabacum HOM05D001728 ORTHO05D004321 3.1e-24 115.9 129 48.8
Rhsim08G0245100 Rhododendron simsii HOM05D001728 ORTHO05D004321 3.1e-24 115.9 130 50.0
arahy.Tifrunner.gnm1.ann1.158S68 Arachis hypogaea HOM05D001728 ORTHO05D004321 6.8e-24 114.8 132 47.0
Nitab4.5_0006338g0070 Nicotiana tabacum HOM05D001728 ORTHO05D004321 6.8e-24 114.8 129 48.1
Peaxi162Scf00038g02337 Petunia axillaris HOM05D001728 ORTHO05D004321 6.8e-24 114.8 130 48.5
Prupe.3G030700 Prunus persica HOM05D001728 ORTHO05D004321 6.8e-24 114.8 131 51.9
Thecc.06G130700 Theobroma cacao HOM05D001728 ORTHO05D004321 8.9e-24 114.4 131 48.1
arahy.Tifrunner.gnm1.ann1.FK8434 Arachis hypogaea HOM05D001728 ORTHO05D004321 1.2e-23 114.0 128 47.7
QL05p000874 Quercus lobata HOM05D001728 ORTHO05D004321 1.5e-23 113.6 130 47.7
QL05p001120 Quercus lobata HOM05D001728 ORTHO05D004321 1.5e-23 113.6 130 47.7
Actinidia31146 Actinidia chinensis HOM05D001728 ORTHO05D004321 2.0e-23 113.2 131 51.9
Duzib235G0145 Durio zibethinus HOM05D001728 ORTHO05D004321 2.0e-23 113.2 131 49.6
Rhsim12G0213200 Rhododendron simsii HOM05D000276 ORTHO05D003951 2.0e-23 113.2 128 51.6
Cpa.g.sc25.198 Carica papaya HOM05D001728 ORTHO05D004321 3.4e-23 112.5 131 47.3
Lalb_Chr17g0343191 Lupinus albus HOM05D001728 ORTHO05D004321 4.4e-23 112.1 131 45.8
ATR0099G071 Amborella trichopoda HOM05D001728 ORTHO05D004321 5.8e-23 111.7 130 45.4
RcHm_v2.0_Chr2g0148081 Rosa chinensis HOM05D001728 ORTHO05D004321 7.5e-23 111.3 131 47.3
Manes.04G151300 Manihot esculenta HOM05D001728 ORTHO05D004321 9.8e-23 110.9 131 48.9
Gohir.A06G142800 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.3e-22 110.5 132 47.7
Psat4g164960 Pisum sativum HOM05D001728 ORTHO05D004321 1.3e-22 110.5 131 44.3
Sed0018882 Sechium edule HOM05D001728 ORTHO05D004321 1.3e-22 110.5 137 44.5
Ca_23449_v3 Cicer arietinum L. HOM05D001728 ORTHO05D004321 1.7e-22 110.2 131 45.0
COL.COLO4_30874 Corchorus olitorius HOM05D001728 ORTHO05D004321 1.7e-22 110.2 132 47.7
Sp1g15410 Schrenkiella parvula HOM05D001728 ORTHO05D004321 1.7e-22 110.2 136 46.3
GSVIVG01016663001 Vitis vinifera HOM05D001728 ORTHO05D004321 1.7e-22 110.2 139 45.3
Sopen06g022550 Solanum pennellii HOM05D001728 ORTHO05D004321 2.9e-22 109.4 132 48.5
PGSC0003DMG401004867 Solanum tuberosum HOM05D001728 ORTHO05D004321 2.9e-22 109.4 131 48.1
THA.LOC104813967 Tarenaya hassleriana HOM05D001728 ORTHO05D004321 2.9e-22 109.4 131 49.6
Glyma.16G014400 Glycine max HOM05D001728 ORTHO05D004321 3.7e-22 109.0 131 45.8
THA.LOC104812276 Tarenaya hassleriana HOM05D001728 ORTHO05D004321 3.7e-22 109.0 131 45.8
CsaV3_3G031050 Cucumis sativus L. HOM05D001728 ORTHO05D004321 6.4e-22 108.2 129 45.0
FvH4_6g35920 Fragaria vesca HOM05D001728 ORTHO05D004321 6.4e-22 108.2 131 46.6
FAN09G1109 Fragaria x ananassa HOM05D001728 ORTHO05D004321 6.4e-22 108.2 131 46.6
FAN14G1964 Fragaria x ananassa HOM05D001728 ORTHO05D004321 6.4e-22 108.2 131 46.6
FAN14G5216 Fragaria x ananassa HOM05D001728 ORTHO05D004321 6.4e-22 108.2 131 46.6
Lj5A28G49 Lonicera japonica HOM05D001728 ORTHO05D004321 6.4e-22 108.2 132 47.0
CiPaw.01G211100 Carya illinoinensis HOM05D001728 ORTHO05D004321 8.3e-22 107.8 134 44.8
ClCG07G014270 Citrullus lanatus HOM05D001728 ORTHO05D004321 8.3e-22 107.8 135 43.7
Cc04_g00660 Coffea canephora HOM05D001728 ORTHO05D004321 8.3e-22 107.8 134 47.0
Glyma.07G046200 Glycine max HOM05D001728 ORTHO05D004321 8.3e-22 107.8 131 45.0
HanXRQChr09g0277281 Helianthus annuus HOM05D001728 ORTHO05D004321 8.3e-22 107.8 133 46.6
Lj9A539T85 Lonicera japonica HOM05D001728 ORTHO05D004321 8.3e-22 107.8 131 45.0
Solyc06g063100.3 Solanum lycopersicum HOM05D001728 ORTHO05D004321 8.3e-22 107.8 131 47.3
Gorai.010G173000 Gossypium raimondii HOM05D001728 ORTHO05D004321 1.1e-21 107.5 132 47.0
AL1G29530 Arabidopsis lyrata HOM05D001728 ORTHO05D004321 1.4e-21 107.1 131 45.0
MELO3C022707.2 Cucumis melo HOM05D001728 ORTHO05D004321 1.4e-21 107.1 135 43.0
Lalb_Chr04g0253961 Lupinus albus HOM05D001728 ORTHO05D004321 1.4e-21 107.1 132 45.5
BolC8t51946H Brassica oleracea HOM05D001728 ORTHO05D004321 1.9e-21 106.7 131 44.3
FAN05G3900 Fragaria x ananassa HOM05D001728 ORTHO05D004321 1.9e-21 106.7 131 45.8
Gohir.D06G148500 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.9e-21 106.7 132 46.2
Hma1.2p1_0090F.1_g045760 Hydrangea macrophylla HOM05D001728 ORTHO05D004321 1.9e-21 106.7 131 46.6
Hma1.2p1_2628F.1_g325685 Hydrangea macrophylla HOM05D001728 ORTHO05D004321 1.9e-21 106.7 131 46.6
Manes.11G012300 Manihot esculenta HOM05D001728 ORTHO05D004321 1.9e-21 106.7 131 47.3
Medtr8g023380 Medicago truncatula HOM05D001728 ORTHO05D004321 1.9e-21 106.7 132 42.4
TWI23G0186 Tripterygium wilfordii HOM05D001728 ORTHO05D004321 1.9e-21 106.7 136 45.6
BcaC07g38844 Brassica carinata HOM05D001728 ORTHO05D004321 2.4e-21 106.3 167 41.3
Ciclev10026383m.g Citrus clementina HOM05D001728 ORTHO05D004321 2.4e-21 106.3 133 45.9
VMungo0331G1763 Vigna mungo HOM05D001728 ORTHO05D004321 2.4e-21 106.3 136 44.1
BcaC05g25652 Brassica carinata HOM05D001728 ORTHO05D004321 3.2e-21 105.9 137 46.0
A06p13230 Brassica napus HOM05D001728 ORTHO05D004321 3.2e-21 105.9 137 46.0
C05p15670 Brassica napus HOM05D001728 ORTHO05D004321 3.2e-21 105.9 137 46.0
BolC5t30274H Brassica oleracea HOM05D001728 ORTHO05D004321 3.2e-21 105.9 137 46.0
BraA06t24476Z Brassica rapa HOM05D001728 ORTHO05D004321 3.2e-21 105.9 137 46.0
C08p43970 Brassica napus HOM05D001728 ORTHO05D004321 4.1e-21 105.5 131 43.5
CARHR017870 Cardamine hirsuta HOM05D001728 ORTHO05D004321 4.1e-21 105.5 135 45.2
SEGI_06866 Sequoiadendron giganteum HOM05D001728 ORTHO05D004321 4.1e-21 105.5 140 46.4
CiPaw.02G130700 Carya illinoinensis HOM05D001728 ORTHO05D004321 5.4e-21 105.1 131 47.3
Sed0008897 Sechium edule HOM05D001728 ORTHO05D004321 5.4e-21 105.1 136 44.1
AT1G17280 Arabidopsis thaliana HOM05D001728 ORTHO05D004321 7.1e-21 104.8 131 44.3
FAN02G4585 Fragaria x ananassa HOM05D001728 ORTHO05D004321 7.1e-21 104.8 131 45.0
Aa31LG7G2090 Aethionema arabicum HOM05D001728 ORTHO05D004321 9.2e-21 104.4 132 45.5
Carub.0001s1704 Capsella rubella HOM05D001728 ORTHO05D004321 9.2e-21 104.4 142 43.0
CAN.G1682.23 Capsicum annuum HOM05D001728 ORTHO05D004321 9.2e-21 104.4 131 47.3
Thhalv10009625m.g Eutrema salsugineum HOM05D001728 ORTHO05D004321 9.2e-21 104.4 131 55.0
EL10Ac7g16497 Beta vulgaris HOM05D001728 ORTHO05D004321 1.2e-20 104.0 135 44.4
BcaB03g13008 Brassica carinata HOM05D001728 ORTHO05D004321 1.2e-20 104.0 137 45.3
Hma1.2p1_1999F.1_g310540 Hydrangea macrophylla HOM05D001728 ORTHO05D004321 1.2e-20 104.0 139 44.6
Lj3g0026896 Lotus japonicus HOM05D001728 ORTHO05D004321 1.2e-20 104.0 131 52.7
Eucgr.J02593 Eucalyptus grandis HOM05D001728 ORTHO05D004321 1.6e-20 103.6 137 45.3
TPR.G29473 Trifolium pratense HOM05D001728 ORTHO05D004321 1.6e-20 103.6 131 42.7
A09p60490 Brassica napus HOM05D001728 ORTHO05D004321 2.1e-20 103.2 135 44.4
BraA09t41420Z Brassica rapa HOM05D001728 ORTHO05D004321 2.1e-20 103.2 135 44.4
MD17G1154600 Malus domestica HOM05D001728 ORTHO05D004321 2.1e-20 103.2 131 49.6
CARHR257870 Cardamine hirsuta HOM05D001728 ORTHO05D004321 2.7e-20 102.8 142 43.0
Oeu015470.1 Olea europaea HOM05D001728 ORTHO05D004321 2.7e-20 102.8 138 43.5
Nitab4.5_0006190g0040 Nicotiana tabacum HOM05D001728 ORTHO05D004321 3.5e-20 102.4 120 48.3
Phvul.010G122800 Phaseolus vulgaris HOM05D001728 ORTHO05D004321 3.5e-20 102.4 131 44.3
TWI14G1006 Tripterygium wilfordii HOM05D001728 ORTHO05D004321 4.6e-20 102.1 138 46.4
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 6.0e-20 101.7 121 45.5
DCAR_007661 Daucus carota HOM05D001728 ORTHO05D004321 7.8e-20 101.3 131 45.0
BcaC07g41410 Brassica carinata HOM05D001728 ORTHO05D004321 1.0e-19 100.9 129 41.9
Nitab4.5_0009717g0020 Nicotiana tabacum HOM05D001728 ORTHO05D004321 1.0e-19 100.9 119 47.9
Oeu006754.1 Olea europaea HOM05D001728 ORTHO05D004321 1.0e-19 100.9 131 44.3
Sabra01G0130400 Salix brachista HOM05D001728 ORTHO05D004321 1.3e-19 100.5 131 44.3
BcaC07g41430 Brassica carinata HOM05D001728 ORTHO05D004321 1.7e-19 100.1 131 44.3
Migut.I01136 Erythranthe guttata HOM05D001728 ORTHO05D004321 1.7e-19 100.1 133 45.9
SalBow6G2824 Salvia bowleyana HOM05D001728 ORTHO05D004321 2.3e-19 99.8 139 41.7
C08p17810 Brassica napus HOM05D001728 ORTHO05D004321 3.0e-19 99.4 141 41.8
BolC8t49407H Brassica oleracea HOM05D001728 ORTHO05D004321 3.0e-19 99.4 141 41.8
Dinv20378 Davidia involucrata HOM05D001728 ORTHO05D004321 5.1e-19 98.6 119 48.7
Lalb_Chr04g0261251 Lupinus albus HOM05D001728 ORTHO05D004321 5.1e-19 98.6 130 44.6
AT5G50430 Arabidopsis thaliana HOM05D001728 ORTHO05D004321 8.6e-19 97.8 135 49.6
A08p30990 Brassica napus HOM05D001728 ORTHO05D004321 8.6e-19 97.8 136 43.4
BraA08t35028Z Brassica rapa HOM05D001728 ORTHO05D004321 8.6e-19 97.8 136 43.4
Duzib160G0016 Durio zibethinus HOM05D001728 ORTHO05D004321 8.6e-19 97.8 131 45.8
Lsat_1_v5_gn_4_90580 Lactuca sativa HOM05D001728 ORTHO05D004321 1.1e-18 97.4 136 41.9
ECA232G0029 Erigeron canadensis HOM05D001728 ORTHO05D004321 1.9e-18 96.7 132 43.9
CANSAT56G0906 Cannabis sativa HOM05D001728 ORTHO05D004321 2.5e-18 96.3 131 43.5
Thhalv10014520m.g Eutrema salsugineum HOM05D001728 ORTHO05D004321 2.5e-18 96.3 145 40.0
MD09G1172300 Malus domestica HOM05D001728 ORTHO05D004321 2.5e-18 96.3 131 45.0
Potri.001G162200 Populus trichocarpa HOM05D001728 ORTHO05D004321 2.5e-18 96.3 131 41.2
PGR102G2367 Punica granatum HOM05D001728 ORTHO05D004321 2.5e-18 96.3 134 48.5
SGA_v2.0_scaffold122G33304 Striga asiatica HOM05D001728 ORTHO05D004321 3.3e-18 95.9 131 42.7
AUR62025612 Chenopodium quinoa HOM05D001728 ORTHO05D004321 5.6e-18 95.1 129 41.9
AUR62043500 Chenopodium quinoa HOM05D001728 ORTHO05D004321 5.6e-18 95.1 129 41.9
Hund05701 Selenicereus undatus HOM05D001728 ORTHO05D004321 5.6e-18 95.1 129 41.9
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.2e-17 94.0 144 41.7
MSTRG.10907 Avicennia marina HOM05D001728 ORTHO05D004321 1.6e-17 93.6 131 53.4
Haze_16140 Corylus avellana HOM05D001728 ORTHO05D004321 3.6e-17 92.4 81 53.1
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 3.6e-17 92.4 123 43.1
Zm00001eb374150 Zea mays HOM05D001728 ORTHO05D004321 3.6e-17 92.4 135 43.0
Ah.15g094900 Amaranthus hybridus HOM05D001728 ORTHO05D004321 4.7e-17 92.0 130 43.8
AL8G24660 Arabidopsis lyrata HOM05D001728 ORTHO05D004321 8.1e-17 91.3 131 46.6
vmacro22013 Vaccinium macrocarpon HOM05D001728 ORTHO05D004321 3.1e-16 89.4 131 44.3
BcaB07g34036 Brassica carinata HOM05D001728 ORTHO05D004321 8.9e-16 87.8 127 39.4
Carub.0008s1054 Capsella rubella HOM05D001728 ORTHO05D004321 8.9e-16 87.8 131 48.9
Gohir.D10G051032 Gossypium hirsutum HOM05D001728 ORTHO05D004321 8.9e-16 87.8 123 41.5
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 8.9e-16 87.8 123 41.5
Pp3c22_19100 Physcomitrium patens HOM05D001728 ORTHO05D004321 8.9e-16 87.8 130 39.2
Zm00001eb278450 Zea mays HOM05D001728 ORTHO05D004321 8.9e-16 87.8 137 41.6
AagrBONN_evm.TU.Sc2ySwM_228.340 Anthoceros agrestis HOM05D001728 ORTHO05D004321 1.5e-15 87.0 129 41.1
Sc15g0004040 Simmondsia chinensis HOM05D001728 ORTHO05D004321 1.5e-15 87.0 97 46.4
Oeu053418.1 Olea europaea HOM05D001728 ORTHO05D004321 3.4e-15 85.9 125 38.4
Zm00001eb028890 Zea mays HOM05D001728 ORTHO05D004321 4.4e-15 85.5 133 42.1
Zm00001eb210040 Zea mays HOM05D001728 ORTHO05D004321 4.4e-15 85.5 133 42.1
Zm00001eb399730 Zea mays HOM05D001728 ORTHO05D004321 4.4e-15 85.5 133 42.1
Os06g0193000 Oryza sativa ssp. japonica HOM05D001728 ORTHO05D004321 5.8e-15 85.1 142 40.1
Peaxi162Scf00207g01547 Petunia axillaris HOM05D001728 ORTHO05D004321 5.8e-15 85.1 52 73.1
AUR62001400 Chenopodium quinoa HOM05D001728 ORTHO05D004321 7.6e-15 84.7 129 39.5
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 9.9e-15 84.3 52 71.2
Zm00001eb329650 Zea mays HOM05D001728 ORTHO05D004321 4.9e-14 82.0 128 40.6
Hund18634 Selenicereus undatus HOM05D001728 ORTHO05D004321 8.4e-14 81.3 223 30.0
CDE07G0536 Ceratophyllum demersum HOM05D001728 ORTHO05D004321 5.4e-13 78.6 135 34.1
HPP92_009327 Vanilla planifolia HOM05D001728 ORTHO05D004321 7.1e-13 78.2 135 36.3
AUR62043999 Chenopodium quinoa HOM05D001728 ORTHO05D004321 1.2e-12 77.4 52 67.3
Zm00001eb315560 Zea mays HOM05D001728 ORTHO05D004321 2.1e-12 76.6 126 39.7
Potri.003G073100 Populus trichocarpa HOM05D001728 ORTHO05D004321 3.5e-12 75.9 52 63.5
Zm00001eb171360 Zea mays HOM05D001728 ORTHO05D004321 6.0e-12 75.1 125 39.2
Zm00001eb241260 Zea mays HOM05D001728 ORTHO05D004321 6.0e-12 75.1 125 39.2
TPR.G11433 Trifolium pratense HOM05D001728 ORTHO05D004321 1.3e-11 73.9 48 66.7
Mapoly0008s0153 Marchantia polymorpha HOM05D001728 ORTHO05D004321 3.9e-11 72.4 48 66.7
Atru.chr1.4160 Acer truncatum HOM05D001728 ORTHO05D004321 5.1e-11 72.0 43 74.4
unitig_26.g8911 Utricularia gibba HOM05D001728 ORTHO05D004321 8.6e-11 71.2 52 61.5
SMO236G0070 Selaginella moellendorffii HOM05D001728 ORTHO05D004321 1.5e-10 70.5 137 35.0
SMO347G0576 Selaginella moellendorffii HOM05D001728 ORTHO05D004321 1.5e-10 70.5 137 35.0
Zm00001eb367340 Zea mays HOM05D001728 ORTHO05D004321 9.6e-10 67.8 55 56.4
CBR_g29935 Chara braunii HOM05D001728 ORTHO05D004321 4.7e-09 65.5 48 60.4
Ah.08g217390 Amaranthus hybridus HOM05D001728 ORTHO05D004321 1.1e-08 64.3 101 38.6
Cre08.g372400 Chlamydomonas reinhardtii HOM05D001728 ORTHO05D004321 3.4e-07 59.3 52 50.0
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 7.6e-07 58.2 59 54.2
MBI13_g01656_MAGBIO Magnolia biondii HOM05D001728 ORTHO05D004321 3.8e-06 55.8 92 35.9
Nn6g35743 Nelumbo nucifera HOM05D001728 ORTHO05D004321 6.4e-06 55.1 32 84.4
TAR627G0048 Trochodendron aralioides HOM05D001728 ORTHO05D004321 6.4e-06 55.1 34 76.5


User provided reference genes

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