Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 4.1e-130 468.0 228 100.0
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.6e-89 333.2 229 70.7
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 2.3e-88 329.3 229 69.0
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 1.9e-87 326.2 229 66.8
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 3.7e-86 322.0 225 67.1
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 4.8e-86 321.6 229 65.9
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 3.8e-83 312.0 229 66.8
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 1.1e-82 310.5 229 65.1
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 3.2e-82 308.9 229 66.4
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 4.2e-82 308.5 229 64.6
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 5.5e-82 308.1 225 64.9
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 5.5e-82 308.1 229 64.6
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 9.3e-82 307.4 227 64.8
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 1.6e-81 306.6 227 62.6
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.6e-81 306.6 229 64.6
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.7e-81 305.8 231 64.9
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 3.5e-81 305.4 229 65.1
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 4.6e-81 305.1 229 64.2
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 1.0e-80 303.9 229 63.8
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.8e-80 303.1 229 64.2
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 2.3e-80 302.8 227 63.9
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 3.0e-80 302.4 227 62.1
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 5.1e-80 301.6 229 62.0
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 1.1e-79 300.4 228 63.2
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 1.5e-79 300.1 224 64.3
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 3.3e-79 298.9 229 63.8
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 4.3e-79 298.5 227 65.2
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 4.3e-79 298.5 229 63.8
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 5.7e-79 298.1 221 63.3
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 5.7e-79 298.1 229 64.6
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 1.6e-78 296.6 228 62.7
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 1.6e-78 296.6 228 63.2
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 2.2e-78 296.2 229 61.1
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 3.7e-78 295.4 227 63.0
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 4.8e-78 295.0 229 62.0
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 8.2e-78 294.3 225 62.7
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 1.1e-77 293.9 221 62.4
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 1.1e-77 293.9 231 60.6
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 2.4e-77 292.7 229 64.6
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 2.4e-77 292.7 223 63.2
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 3.1e-77 292.4 228 61.0
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.1e-77 292.4 228 63.2
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 1.2e-76 290.4 227 63.0
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 2.0e-76 289.7 227 60.8
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.4e-76 288.9 227 62.6
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 5.9e-76 288.1 230 61.7
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.3e-75 287.0 227 63.0
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.7e-75 286.6 225 62.2
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 5.0e-75 285.0 225 62.2
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.1e-74 283.9 227 62.1
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 1.9e-74 283.1 228 61.8
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 5.5e-74 281.6 230 60.9
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.2e-73 280.4 227 60.4
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 1.2e-73 280.4 229 59.4
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 2.1e-73 279.6 228 58.8
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 2.7e-73 279.3 229 60.3
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 3.6e-73 278.9 226 59.3
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.6e-73 278.5 225 61.8
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 6.1e-73 278.1 225 60.0
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 6.1e-73 278.1 229 58.5
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 1.0e-72 277.3 230 60.9
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.4e-72 276.9 225 60.0
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 1.4e-72 276.9 226 59.7
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 1.8e-72 276.6 225 62.2
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.3e-71 271.9 191 66.5
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 7.4e-71 271.2 228 59.6
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 2.2e-70 269.6 229 55.5
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.8e-70 269.2 231 58.4
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 1.2e-68 263.8 228 55.7
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 2.6e-68 262.7 227 57.3
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 3.4e-68 262.3 223 56.1
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 6.5e-67 258.1 225 55.1
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 6.5e-67 258.1 225 56.0
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 6.5e-67 258.1 227 56.4
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.1e-66 257.3 225 55.6
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 1.4e-66 256.9 228 54.8
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 2.5e-66 256.1 202 59.4
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 5.5e-66 255.0 228 53.9
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 9.4e-66 254.2 217 56.7
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 1.2e-65 253.8 228 53.5
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 1.6e-65 253.4 225 54.2
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 1.6e-65 253.4 228 53.9
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 2.7e-65 252.7 228 54.4
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 4.7e-65 251.9 203 58.1
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 7.9e-65 251.1 228 53.1
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 2.3e-64 249.6 225 53.8
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 3.0e-64 249.2 228 53.1
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 3.9e-64 248.8 229 53.7
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 2.6e-63 246.1 225 54.7
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 3.3e-63 245.7 226 57.1
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 7.4e-63 244.6 230 53.9
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 1.7e-62 243.4 231 53.2
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.8e-62 242.7 221 56.1
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 1.4e-61 240.4 228 53.1
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 1.3e-59 233.8 224 50.4
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 1.3e-59 233.8 228 50.4
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 5.5e-58 228.4 248 45.6
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 4.7e-57 225.3 235 49.4
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 1.0e-56 224.2 235 49.8
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 2.3e-56 223.0 221 52.9
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 4.1e-53 212.2 219 52.1
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 7.0e-53 211.5 144 68.8
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 5.9e-52 208.4 248 46.0
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.5e-50 203.8 245 46.1
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.5e-50 203.0 245 44.5
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 9.4e-50 201.1 224 45.1
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 2.7e-49 199.5 239 41.0
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 6.8e-48 194.9 227 44.9
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 2.6e-47 193.0 232 44.0
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 4.4e-47 192.2 227 43.6
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 4.4e-47 192.2 237 45.6
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 4.4e-47 192.2 229 43.7
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.3e-46 190.7 203 47.3
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 1.1e-45 187.6 228 41.7
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 4.1e-45 185.7 223 44.4
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.0e-44 183.3 224 45.1
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 2.9e-43 179.5 261 37.5
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.5e-42 177.2 228 41.7
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 3.2e-42 176.0 225 39.6
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 1.2e-41 174.1 229 42.4
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 1.0e-40 171.0 260 36.2
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 3.0e-40 169.5 173 46.8
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 3.0e-40 169.5 173 46.8
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.6e-39 166.4 263 35.7
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 4.9e-38 162.2 352 30.7
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 4.9e-38 162.2 150 50.7
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 6.3e-38 161.8 263 35.4
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 6.3e-38 161.8 214 42.1
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 8.3e-38 161.4 251 38.6
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 1.4e-37 160.6 160 51.2
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 5.4e-37 158.7 228 39.0
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.7e-36 156.4 227 42.3
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 4.5e-36 155.6 192 43.2
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 1.0e-35 154.5 186 44.1
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 5.0e-35 152.1 155 50.3
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.3e-34 149.4 232 42.7
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 5.5e-34 148.7 278 34.5
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 7.2e-34 148.3 232 42.2
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 9.5e-34 147.9 224 40.2
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 2.1e-33 146.7 249 36.1
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 2.8e-33 146.4 141 48.9
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 2.8e-33 146.4 137 51.8
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 3.6e-33 146.0 309 32.7
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 6.1e-33 145.2 276 33.7
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 7.5e-31 138.3 211 38.4
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.3e-30 137.5 224 35.3
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 9.2e-29 131.3 225 34.7
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 2.0e-28 130.2 176 43.8
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 1.1e-26 124.4 149 44.3
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 9.5e-26 121.3 142 43.7
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 2.1e-25 120.2 142 43.7
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 3.6e-25 119.4 143 42.7
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 3.6e-25 119.4 104 53.8
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 2.0e-23 113.6 115 47.0
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.0e-23 113.6 219 31.5
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 8.3e-22 108.2 220 34.5
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 7.8e-20 101.7 113 42.5
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 3.9e-19 99.4 201 29.9
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 7.5e-15 85.1 95 40.0
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.2e-14 83.6 153 32.0
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.4e-13 80.9 97 42.3
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.6e-12 77.4 74 48.6
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 2.5e-10 70.1 194 28.4
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 5.6e-10 68.9 63 47.6
Cfa026731 Carpinus fangiana HOM05D004427 ORTHO05D005381 3.1e-08 63.2 128 28.9


User provided reference genes

Program Settings