Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G02843 Aquilegia oxysepala HOM05D002256 ORTHO05D002533 1.1e-62 243.0 115 100.0
Aqoxy6G01665 Aquilegia oxysepala HOM05D045459 ORTHO05D078773 3.9e-20 101.7 116 48.3
Aqoxy7G03779 Aquilegia oxysepala HOM05D045459 ORTHO05D077845 6.3e-10 67.8 89 42.7
Nitab4.5_0001639g0050 Nicotiana tabacum HOM05D002256 ORTHO05D002533 5.3e-09 64.7 73 46.6
CAN.G1214.2 Capsicum annuum HOM05D002256 ORTHO05D002533 2.0e-08 62.8 73 45.2
Nitab4.5_0000183g0090 Nicotiana tabacum HOM05D002256 ORTHO05D002533 2.0e-08 62.8 73 45.2
Peaxi162Scf00445g00046 Petunia axillaris HOM05D002256 ORTHO05D002533 2.0e-08 62.8 73 45.2
QL08p061462 Quercus lobata HOM05D002256 ORTHO05D002533 2.0e-08 62.8 70 44.3
QL08p061495 Quercus lobata HOM05D002256 ORTHO05D002533 2.0e-08 62.8 70 44.3
Solyc08g074790.3 Solanum lycopersicum HOM05D002256 ORTHO05D002533 2.0e-08 62.8 73 45.2
Sopen08g023390 Solanum pennellii HOM05D002256 ORTHO05D002533 2.0e-08 62.8 73 45.2
PGSC0003DMG400030074 Solanum tuberosum HOM05D002256 ORTHO05D002533 2.0e-08 62.8 73 45.2
SEGI_19103 Sequoiadendron giganteum HOM05D002256 ORTHO05D002533 4.5e-08 61.6 77 40.3
SEGI_06546 Sequoiadendron giganteum HOM05D002256 ORTHO05D002533 7.7e-08 60.8 67 43.3
THA.LOC104824289 Tarenaya hassleriana HOM05D002256 ORTHO05D002533 1.0e-07 60.5 67 44.8
Lj1A146G67 Lonicera japonica HOM05D002256 ORTHO05D002533 1.3e-07 60.1 73 42.5
Potri.008G060000 Populus trichocarpa HOM05D002256 ORTHO05D002533 1.3e-07 60.1 73 42.5
EL10Ac7g16078 Beta vulgaris HOM05D002256 ORTHO05D002533 1.7e-07 59.7 73 43.8
AUR62001728 Chenopodium quinoa HOM05D002256 ORTHO05D002533 1.7e-07 59.7 73 43.8
AUR62020047 Chenopodium quinoa HOM05D002256 ORTHO05D002533 1.7e-07 59.7 73 43.8
Gohir.D10G235300 Gossypium hirsutum HOM05D002256 ORTHO05D002533 1.7e-07 59.7 67 44.8
Gorai.011G268900 Gossypium raimondii HOM05D002256 ORTHO05D002533 1.7e-07 59.7 67 44.8
Oeu004180.1 Olea europaea HOM05D002256 ORTHO05D002533 1.7e-07 59.7 73 43.8
GSVIVG01034107001 Vitis vinifera HOM05D002256 ORTHO05D002533 1.7e-07 59.7 73 42.5
MSTRG.20392 Avicennia marina HOM05D002256 ORTHO05D002533 2.2e-07 59.3 73 43.8
PSO017G1767 Papaver somniferum HOM05D002256 ORTHO05D002533 2.2e-07 59.3 87 40.2
PSO170G1661 Papaver somniferum HOM05D002256 ORTHO05D002533 2.2e-07 59.3 87 40.2
SalBow7G0543 Salvia bowleyana HOM05D002256 ORTHO05D002533 2.2e-07 59.3 73 43.8
Solyc08g074860.1 Solanum lycopersicum HOM05D002256 ORTHO05D003455 2.2e-07 59.3 67 43.3
ATR0626G155 Amborella trichopoda HOM05D002256 ORTHO05D002533 2.9e-07 58.9 73 42.5
Cfa001420 Carpinus fangiana HOM05D002256 ORTHO05D002533 2.9e-07 58.9 67 44.8
CDE04G2802 Ceratophyllum demersum HOM05D002256 ORTHO05D002533 2.9e-07 58.9 67 43.3
Cc01_g13420 Coffea canephora HOM05D002256 ORTHO05D002533 2.9e-07 58.9 73 43.8
Duzib106G1203 Durio zibethinus HOM05D002256 ORTHO05D002533 2.9e-07 58.9 67 43.3
Duzib114G0500 Durio zibethinus HOM05D002256 ORTHO05D002533 2.9e-07 58.9 67 43.3
Manes.07G120100 Manihot esculenta HOM05D002256 ORTHO05D002533 2.9e-07 58.9 73 42.5
Hund04914 Selenicereus undatus HOM05D002256 ORTHO05D002533 2.9e-07 58.9 73 43.8
Sopen08g023460 Solanum pennellii HOM05D002256 ORTHO05D003455 2.9e-07 58.9 67 41.8
Thecc.10G035300 Theobroma cacao HOM05D002256 ORTHO05D002533 2.9e-07 58.9 67 43.3
Ah.08g220200 Amaranthus hybridus HOM05D002256 ORTHO05D002533 3.8e-07 58.5 73 42.5
Cpa.g.sc19.264 Carica papaya HOM05D002256 ORTHO05D002533 3.8e-07 58.5 67 43.3
CDE07G1870 Ceratophyllum demersum HOM05D002256 ORTHO05D002533 3.8e-07 58.5 67 43.3
MELO3C001947.2 Cucumis melo HOM05D002256 ORTHO05D002533 3.8e-07 58.5 67 43.3
Dinv17054 Davidia involucrata HOM05D002256 ORTHO05D002533 3.8e-07 58.5 73 42.5
Dinv42998 Davidia involucrata HOM05D002256 ORTHO05D002533 3.8e-07 58.5 73 42.5
Dinv43099 Davidia involucrata HOM05D002256 ORTHO05D002533 3.8e-07 58.5 73 42.5
MBI05_g35174_MAGBIO Magnolia biondii HOM05D002256 ORTHO05D002533 3.8e-07 58.5 73 42.5
MCO14G118 Micromonas commoda HOM05D002256 ORTHO05D002533 3.8e-07 58.5 73 42.5
Nn3g18450 Nelumbo nucifera HOM05D002256 ORTHO05D002533 3.8e-07 58.5 73 42.5
TAR369G1030 Trochodendron aralioides HOM05D002256 ORTHO05D002533 3.8e-07 58.5 73 42.5
Atru.chr3.4010 Acer truncatum HOM05D002256 ORTHO05D002533 5.0e-07 58.2 67 41.8
Dinv16259 Davidia involucrata HOM05D002256 ORTHO05D002533 5.0e-07 58.2 73 42.5
Gohir.A06G166000 Gossypium hirsutum HOM05D002256 ORTHO05D002533 5.0e-07 58.2 67 43.3
Gohir.D06G171400 Gossypium hirsutum HOM05D002256 ORTHO05D002533 5.0e-07 58.2 67 43.3
Gorai.010G200400 Gossypium raimondii HOM05D002256 ORTHO05D002533 5.0e-07 58.2 67 43.3
Lj2g0017658 Lotus japonicus HOM05D002256 ORTHO05D002533 5.0e-07 58.2 67 41.8
Manes.10G025200 Manihot esculenta HOM05D002256 ORTHO05D002533 5.0e-07 58.2 73 42.5
PGR044G1890 Punica granatum HOM05D002256 ORTHO05D002533 5.0e-07 58.2 73 42.5
TWI15G1231 Tripterygium wilfordii HOM05D002256 ORTHO05D002533 5.0e-07 58.2 73 42.5
COL.COLO4_34086 Corchorus olitorius HOM05D002256 ORTHO05D002533 6.5e-07 57.8 73 42.5
Eucgr.G02987 Eucalyptus grandis HOM05D002256 ORTHO05D002533 6.5e-07 57.8 73 42.5
Gohir.A10G223000 Gossypium hirsutum HOM05D002256 ORTHO05D002533 6.5e-07 57.8 67 43.3
Medtr8g031560 Medicago truncatula HOM05D002256 ORTHO05D002533 6.5e-07 57.8 67 41.8
Sabra10G0153200 Salix brachista HOM05D002256 ORTHO05D002533 6.5e-07 57.8 67 41.8
THA.LOC104816580 Tarenaya hassleriana HOM05D002256 ORTHO05D002533 6.5e-07 57.8 67 43.3
GSVIVG01024872001 Vitis vinifera HOM05D002256 ORTHO05D002533 6.5e-07 57.8 73 42.5
CSS0005404 Camellia sinensis var. sinensis HOM05D002256 ORTHO05D002533 8.5e-07 57.4 73 41.1
DCAR_015638 Daucus carota HOM05D002256 ORTHO05D002533 8.5e-07 57.4 73 42.5
MD03G1048500 Malus domestica HOM05D002256 ORTHO05D002533 8.5e-07 57.4 67 43.3
Oeu007668.3 Olea europaea HOM05D002256 ORTHO05D002533 8.5e-07 57.4 73 41.1
PSO591G0329 Papaver somniferum HOM05D002256 ORTHO05D002533 8.5e-07 57.4 73 41.1
PSO832G3690 Papaver somniferum HOM05D002256 ORTHO05D002533 8.5e-07 57.4 73 41.1
Pp3c15_21950 Physcomitrium patens HOM05D002256 ORTHO05D002533 8.5e-07 57.4 67 43.3
Sabra08G0044100 Salix brachista HOM05D002256 ORTHO05D002533 8.5e-07 57.4 73 42.5
TWI63G0850 Tripterygium wilfordii HOM05D002256 ORTHO05D002533 8.5e-07 57.4 73 42.5
TAR636G1259 Trochodendron aralioides HOM05D002256 ORTHO05D002533 8.5e-07 57.4 73 41.1
TAR636G2356 Trochodendron aralioides HOM05D002256 ORTHO05D002533 8.5e-07 57.4 73 41.1
GSVIVG01016472001 Vitis vinifera HOM05D002256 ORTHO05D002533 8.5e-07 57.4 73 42.5
Atru.chr3.4009 Acer truncatum HOM05D002256 ORTHO05D002533 1.1e-06 57.0 67 40.3
Carub.0003s1071 Capsella rubella HOM05D002256 ORTHO05D002533 1.1e-06 57.0 67 43.3
COL.COLO4_25504 Corchorus olitorius HOM05D002256 ORTHO05D002533 1.1e-06 57.0 67 41.8
Haze_17125 Corylus avellana HOM05D002256 ORTHO05D002533 1.1e-06 57.0 67 43.3
Migut.B00987 Erythranthe guttata HOM05D002256 ORTHO05D002533 1.1e-06 57.0 73 42.5
Migut.D02319 Erythranthe guttata HOM05D002256 ORTHO05D002533 1.1e-06 57.0 73 42.5
MD11G1092800 Malus domestica HOM05D002256 ORTHO05D002533 1.1e-06 57.0 67 41.8
Potri.010G199000 Populus trichocarpa HOM05D002256 ORTHO05D002533 1.1e-06 57.0 73 41.1
Aa31LG3G4720 Aethionema arabicum HOM05D002256 ORTHO05D002533 1.4e-06 56.6 67 41.8
CANSAT35G0998 Cannabis sativa HOM05D002256 ORTHO05D002533 1.4e-06 56.6 67 41.8
CANSAT54G2150 Cannabis sativa HOM05D002256 ORTHO05D002533 1.4e-06 56.6 67 41.8
CiPaw.13G087800 Carya illinoinensis HOM05D002256 ORTHO05D002533 1.4e-06 56.6 67 41.8
ClCG04G012610 Citrullus lanatus HOM05D002256 ORTHO05D002533 1.4e-06 56.6 67 41.8
Haze_24187 Corylus avellana HOM05D002256 ORTHO05D002533 1.4e-06 56.6 67 41.8
CsaV3_1G005090 Cucumis sativus L. HOM05D002256 ORTHO05D002533 1.4e-06 56.6 67 41.8
ECA232G4723 Erigeron canadensis HOM05D002256 ORTHO05D002533 1.4e-06 56.6 73 42.5
Thhalv10021248m.g Eutrema salsugineum HOM05D002256 ORTHO05D002533 1.4e-06 56.6 67 41.8
FvH4_3g37030 Fragaria vesca HOM05D002256 ORTHO05D002533 1.4e-06 56.6 67 41.8
FAN11G0902 Fragaria x ananassa HOM05D002256 ORTHO05D002533 1.4e-06 56.6 67 41.8
FAN16G2255 Fragaria x ananassa HOM05D002256 ORTHO05D002533 1.4e-06 56.6 67 41.8
FAN21G0285 Fragaria x ananassa HOM05D002256 ORTHO05D002533 1.4e-06 56.6 67 41.8
FAN25G1904 Fragaria x ananassa HOM05D002256 ORTHO05D002533 1.4e-06 56.6 67 41.8
Prupe.6G068500 Prunus persica HOM05D002256 ORTHO05D002533 1.4e-06 56.6 67 41.8
QL01p028056 Quercus lobata HOM05D002256 ORTHO05D002533 1.4e-06 56.6 67 41.8
RcHm_v2.0_Chr5g0066421 Rosa chinensis HOM05D002256 ORTHO05D002533 1.4e-06 56.6 67 41.8
VMungo0464G1823 Vigna mungo HOM05D002256 ORTHO05D002533 1.4e-06 56.6 67 41.8
arahy.Tifrunner.gnm1.ann1.EZ06IQ Arachis hypogaea HOM05D002256 ORTHO05D002533 1.9e-06 56.2 67 41.8
arahy.Tifrunner.gnm1.ann1.F5T9UV Arachis hypogaea HOM05D002256 ORTHO05D002533 1.9e-06 56.2 67 41.8
arahy.Tifrunner.gnm1.ann1.I9RV0S Arachis hypogaea HOM05D002256 ORTHO05D002533 1.9e-06 56.2 67 41.8
arahy.Tifrunner.gnm1.ann1.L4WEQ9 Arachis hypogaea HOM05D002256 ORTHO05D002533 1.9e-06 56.2 67 41.8
arahy.Tifrunner.gnm1.ann1.RT3WI0 Arachis hypogaea HOM05D002256 ORTHO05D002533 1.9e-06 56.2 67 41.8
FAN11G0891 Fragaria x ananassa HOM05D002256 ORTHO05D002533 1.9e-06 56.2 86 34.9
Glyma.18G133400 Glycine max HOM05D002256 ORTHO05D002533 1.9e-06 56.2 67 41.8
Gohir.A03G045400 Gossypium hirsutum HOM05D002256 ORTHO05D002533 1.9e-06 56.2 67 41.8
Gohir.D03G121600 Gossypium hirsutum HOM05D002256 ORTHO05D002533 1.9e-06 56.2 67 41.8
Gorai.003G128700 Gossypium raimondii HOM05D002256 ORTHO05D002533 1.9e-06 56.2 67 41.8
PSO135G0930 Papaver somniferum HOM05D002256 ORTHO05D002533 1.9e-06 56.2 74 43.2
Peaxi162Scf00611g00411 Petunia axillaris HOM05D002256 ORTHO05D002533 1.9e-06 56.2 73 41.1
Phvul.003G054600 Phaseolus vulgaris HOM05D002256 ORTHO05D002533 1.9e-06 56.2 67 41.8
Pp3c9_17550 Physcomitrium patens HOM05D002256 ORTHO05D002533 1.9e-06 56.2 67 41.8
HPP92_018130 Vanilla planifolia HOM05D002256 ORTHO05D002533 1.9e-06 56.2 67 41.8
ATR0730G196 Amborella trichopoda HOM05D002256 ORTHO05D002533 2.5e-06 55.8 73 39.7
AL3G22920 Arabidopsis lyrata HOM05D002256 ORTHO05D002533 2.5e-06 55.8 67 41.8
AL5G36330 Arabidopsis lyrata HOM05D002256 ORTHO05D002533 2.5e-06 55.8 67 41.8
AT3G11400 Arabidopsis thaliana HOM05D002256 ORTHO05D002533 2.5e-06 55.8 67 41.8
BcaB04g18638 Brassica carinata HOM05D002256 ORTHO05D002533 2.5e-06 55.8 67 41.8
BcaB04g21139 Brassica carinata HOM05D002256 ORTHO05D002533 2.5e-06 55.8 67 41.8
BcaB06g25629 Brassica carinata HOM05D002256 ORTHO05D002533 2.5e-06 55.8 67 41.8
BcaC01g04124 Brassica carinata HOM05D002256 ORTHO05D002533 2.5e-06 55.8 67 41.8
BcaC05g29380 Brassica carinata HOM05D002256 ORTHO05D002533 2.5e-06 55.8 67 41.8
BcaC05g29382 Brassica carinata HOM05D002256 ORTHO05D002533 2.5e-06 55.8 67 41.8
A03p37040 Brassica napus HOM05D002256 ORTHO05D002533 2.5e-06 55.8 67 41.8
A05p37990 Brassica napus HOM05D002256 ORTHO05D002533 2.5e-06 55.8 67 41.8
C03p44880 Brassica napus HOM05D002256 ORTHO05D002533 2.5e-06 55.8 67 41.8
C05p56750 Brassica napus HOM05D002256 ORTHO05D002533 2.5e-06 55.8 67 41.8
BolC1t05319H Brassica oleracea HOM05D002256 ORTHO05D002533 2.5e-06 55.8 67 41.8
BolC3t16748H Brassica oleracea HOM05D002256 ORTHO05D002533 2.5e-06 55.8 67 41.8
BolC5t34339H Brassica oleracea HOM05D002256 ORTHO05D002533 2.5e-06 55.8 67 41.8
BraA01t04188Z Brassica rapa HOM05D002256 ORTHO05D002533 2.5e-06 55.8 67 41.8
BraA03t12866Z Brassica rapa HOM05D002256 ORTHO05D002533 2.5e-06 55.8 67 41.8
BraA05t22590Z Brassica rapa HOM05D002256 ORTHO05D002533 2.5e-06 55.8 67 41.8
CARHR085940 Cardamine hirsuta HOM05D002256 ORTHO05D002533 2.5e-06 55.8 67 41.8
Sc21g0006070 Simmondsia chinensis HOM05D002256 ORTHO05D002533 2.5e-06 55.8 90 35.6
TPR.G4376 Trifolium pratense HOM05D002256 ORTHO05D002533 2.5e-06 55.8 90 34.4
Zm00001eb173560 Zea mays HOM05D002256 ORTHO05D002533 2.5e-06 55.8 76 36.8
AagrBONN_evm.TU.Sc2ySwM_117.2488 Anthoceros agrestis HOM05D002256 ORTHO05D002533 3.2e-06 55.5 67 41.8
Carub.0006s0490 Capsella rubella HOM05D002256 ORTHO05D002533 3.2e-06 55.5 67 41.8
CARHR041210 Cardamine hirsuta HOM05D002256 ORTHO05D002533 3.2e-06 55.5 71 38.0
CiPaw.14G064600 Carya illinoinensis HOM05D002256 ORTHO05D002533 3.2e-06 55.5 67 41.8
ClCG05G011940 Citrullus lanatus HOM05D002256 ORTHO05D002533 3.2e-06 55.5 67 40.3
COL.COLO4_18586 Corchorus olitorius HOM05D002256 ORTHO05D002533 3.2e-06 55.5 67 40.3
MELO3C023779.2 Cucumis melo HOM05D002256 ORTHO05D002533 3.2e-06 55.5 67 40.3
Duzib168G2184 Durio zibethinus HOM05D002256 ORTHO05D002533 3.2e-06 55.5 67 40.3
Eucgr.G02983 Eucalyptus grandis HOM05D002256 ORTHO05D002533 3.2e-06 55.5 67 41.8
Thhalv10027172m.g Eutrema salsugineum HOM05D002256 ORTHO05D002533 3.2e-06 55.5 85 35.3
Sp3g09630 Schrenkiella parvula HOM05D002256 ORTHO05D002533 3.2e-06 55.5 67 41.8
Thecc.09G313800 Theobroma cacao HOM05D002256 ORTHO05D002533 3.2e-06 55.5 67 40.3
AT5G06000 Arabidopsis thaliana HOM05D002256 ORTHO05D002533 4.2e-06 55.1 67 41.8
Ciclev10028957m.g Citrus clementina HOM05D002256 ORTHO05D002533 4.2e-06 55.1 67 40.3
DCAR_011739 Daucus carota HOM05D002256 ORTHO05D002533 4.2e-06 55.1 82 37.8
HanXRQChr15g0496481 Helianthus annuus HOM05D002256 ORTHO05D002533 4.2e-06 55.1 73 41.1
Lalb_Chr16g0382451 Lupinus albus HOM05D002256 ORTHO05D002533 4.2e-06 55.1 67 40.3
Solyc03g096680.2 Solanum lycopersicum HOM05D002256 ORTHO05D002533 4.2e-06 55.1 73 39.7
DCAR_018928 Daucus carota HOM05D002256 ORTHO05D002533 5.5e-06 54.7 73 41.1
Lalb_Chr05g0227941 Lupinus albus HOM05D002256 ORTHO05D002533 5.5e-06 54.7 67 40.3
Sed0012319 Sechium edule HOM05D002256 ORTHO05D002533 5.5e-06 54.7 67 40.3
Sed0012978 Sechium edule HOM05D002256 ORTHO05D002533 5.5e-06 54.7 67 40.3
Sopen03g026900 Solanum pennellii HOM05D002256 ORTHO05D002533 5.5e-06 54.7 73 39.7
PGSC0003DMG400015702 Solanum tuberosum HOM05D002256 ORTHO05D003455 5.5e-06 54.7 67 41.8
PGSC0003DMG400016735 Solanum tuberosum HOM05D002256 ORTHO05D002533 5.5e-06 54.7 73 38.4
CDE10G0570 Ceratophyllum demersum HOM05D002256 ORTHO05D002533 7.2e-06 54.3 64 42.2
LjContig00408g0010327 Lotus japonicus HOM05D002256 ORTHO05D002533 7.2e-06 54.3 67 40.3
Mapoly0144s0016 Marchantia polymorpha HOM05D002256 ORTHO05D002533 7.2e-06 54.3 67 40.3
Medtr8g107310 Medicago truncatula HOM05D002256 ORTHO05D002533 7.2e-06 54.3 67 40.3
Os02g0788300 Oryza sativa ssp. japonica HOM05D002256 ORTHO05D002533 7.2e-06 54.3 87 36.8
Psat7g003600 Pisum sativum HOM05D002256 ORTHO05D002533 7.2e-06 54.3 67 40.3
Psat7g003640 Pisum sativum HOM05D002256 ORTHO05D002533 7.2e-06 54.3 67 40.3
Rhsim03G0136300 Rhododendron simsii HOM05D002256 ORTHO05D002533 7.2e-06 54.3 73 41.1
Sc10g0001860 Simmondsia chinensis HOM05D002256 ORTHO05D002533 7.2e-06 54.3 67 38.8
TPR.G1466 Trifolium pratense HOM05D002256 ORTHO05D002533 7.2e-06 54.3 67 40.3
VMungo0464G0067 Vigna mungo HOM05D002256 ORTHO05D002533 7.2e-06 54.3 67 40.3
BraA10t45074Z Brassica rapa HOM05D000087 ORTHO05D002585 9.4e-06 53.9 67 38.8
Ca_23667_v3 Cicer arietinum L. HOM05D002256 ORTHO05D002533 9.4e-06 53.9 67 40.3
FAN11G2136 Fragaria x ananassa HOM05D002256 ORTHO05D002533 9.4e-06 53.9 86 34.9
Glyma.08G290700 Glycine max HOM05D002256 ORTHO05D002533 9.4e-06 53.9 67 40.3
Lj8A78G47 Lonicera japonica HOM05D002256 ORTHO05D002533 9.4e-06 53.9 73 41.1
Os02g0788400 Oryza sativa ssp. japonica HOM05D002256 ORTHO05D002533 9.4e-06 53.9 67 38.8


User provided reference genes

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