Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G02424 Aquilegia oxysepala HOM05D005727 ORTHO05D007324 1.9e-133 479.2 240 100.0
TAR267G0001 Trochodendron aralioides HOM05D005727 ORTHO05D007324 8.5e-102 374.0 229 81.7
TAR636G3506 Trochodendron aralioides HOM05D005727 ORTHO05D007324 3.2e-101 372.1 229 81.2
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 3.6e-100 368.6 240 78.8
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 1.4e-96 356.7 235 77.4
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 2.4e-96 355.9 240 75.0
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 2.0e-95 352.8 240 73.3
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 2.0e-95 352.8 240 73.3
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 2.7e-95 352.4 240 73.3
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 3.5e-95 352.1 246 75.6
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 3.5e-95 352.1 235 75.7
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 5.9e-95 351.3 234 74.4
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 1.0e-94 350.5 245 75.1
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 1.9e-93 346.3 244 74.2
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 1.9e-93 346.3 240 72.9
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 1.9e-93 346.3 242 74.4
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 1.9e-93 346.3 236 73.7
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 9.5e-93 344.0 240 72.9
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 9.5e-93 344.0 215 77.2
FAN14G2915 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.2e-92 343.6 242 72.3
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 2.1e-92 342.8 244 74.2
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 2.1e-92 342.8 240 74.6
CSS0016709 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 2.8e-92 342.4 243 72.8
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 2.8e-92 342.4 241 71.8
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 3.6e-92 342.0 242 72.7
FAN05G4930 Fragaria x ananassa HOM05D005727 ORTHO05D007324 4.7e-92 341.7 242 72.3
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 8.0e-92 340.9 242 73.1
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 1.8e-91 339.7 217 79.3
FvH4_6g09890 Fragaria vesca HOM05D005727 ORTHO05D007324 2.3e-91 339.3 242 71.5
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 2.3e-91 339.3 240 71.2
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 4.0e-91 338.6 243 71.6
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 5.2e-91 338.2 242 71.9
Cc06_g00400 Coffea canephora HOM05D005727 ORTHO05D007324 6.8e-91 337.8 235 72.3
CsaV3_3G033100 Cucumis sativus L. HOM05D005727 ORTHO05D007324 8.9e-91 337.4 237 72.2
FAN09G3145 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.5e-90 336.7 242 71.1
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 2.0e-90 336.3 227 74.0
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 4.4e-90 335.1 240 71.2
SalBow8G0913 Salvia bowleyana HOM05D005727 ORTHO05D007324 5.7e-90 334.7 223 75.3
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 1.3e-89 333.6 242 71.1
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 1.3e-89 333.6 233 71.2
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 1.3e-89 333.6 240 72.1
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 2.2e-89 332.8 235 71.5
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 2.9e-89 332.4 239 73.2
HanXRQChr11g0345321 Helianthus annuus HOM05D005727 ORTHO05D007324 2.9e-89 332.4 229 72.5
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 4.9e-89 331.6 242 72.3
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 6.4e-89 331.3 248 69.4
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 8.3e-89 330.9 240 71.2
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 1.1e-88 330.5 189 85.2
FAN05G2443 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.1e-88 330.5 260 67.3
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 1.4e-88 330.1 233 71.2
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 1.8e-88 329.7 240 72.9
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 7.0e-88 327.8 240 71.2
FAN05G2146 Fragaria x ananassa HOM05D005727 ORTHO05D007324 9.2e-88 327.4 263 66.9
ECA248G0208 Erigeron canadensis HOM05D005727 ORTHO05D007324 1.2e-87 327.0 220 70.9
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 2.0e-87 326.2 240 69.6
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 7.8e-87 324.3 242 67.8
Oeu057982.1 Olea europaea HOM05D005727 ORTHO05D007324 1.7e-86 323.2 240 69.6
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 1.7e-86 323.2 241 68.5
PSO170G4055 Papaver somniferum HOM05D005727 ORTHO05D007324 2.3e-86 322.8 246 69.9
SalBow1G7101 Salvia bowleyana HOM05D005727 ORTHO05D007324 2.3e-86 322.8 251 67.3
PSO017G0584 Papaver somniferum HOM05D005727 ORTHO05D007324 3.9e-86 322.0 246 69.5
Thhalv10014581m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 6.6e-86 321.2 222 69.8
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 6.6e-86 321.2 240 69.2
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 6.6e-86 321.2 242 68.6
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 8.6e-86 320.9 227 70.5
CSS0006704 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 1.9e-85 319.7 252 68.3
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 3.3e-85 318.9 252 66.3
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 3.3e-85 318.9 243 67.5
CARHR083040 Cardamine hirsuta HOM05D005727 ORTHO05D007324 7.3e-85 317.8 245 68.6
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 7.3e-85 317.8 240 69.2
Actinidia20792 Actinidia chinensis HOM05D005727 ORTHO05D007324 9.5e-85 317.4 245 67.8
Os12g0115900 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 1.2e-84 317.0 224 70.5
Os11g0116400 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 1.6e-84 316.6 227 69.6
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 2.8e-84 315.8 232 69.4
Migut.J00039 Erythranthe guttata HOM05D005727 ORTHO05D007324 3.6e-84 315.5 224 70.5
SalBow1G5580 Salvia bowleyana HOM05D005727 ORTHO05D007324 3.6e-84 315.5 200 77.5
THA.LOC104823320 Tarenaya hassleriana HOM05D005727 ORTHO05D007324 3.6e-84 315.5 236 68.6
HanXRQChr01g0000121 Helianthus annuus HOM05D005727 ORTHO05D007324 4.7e-84 315.1 219 69.9
AT3G08740 Arabidopsis thaliana HOM05D005727 ORTHO05D007324 8.0e-84 314.3 241 66.8
Sp3g07170 Schrenkiella parvula HOM05D005727 ORTHO05D007324 1.0e-83 313.9 241 67.6
Carub.0003s0787 Capsella rubella HOM05D005727 ORTHO05D007324 1.8e-83 313.2 242 67.8
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 1.8e-83 313.2 240 68.3
C09p74740 Brassica napus HOM05D005727 ORTHO05D007324 8.9e-83 310.8 189 76.7
BcaNung03303 Brassica carinata HOM05D005727 ORTHO05D007324 1.2e-82 310.5 192 75.5
AL3G19740 Arabidopsis lyrata HOM05D005727 ORTHO05D007324 1.5e-82 310.1 241 66.8
BolC3t14633H Brassica oleracea HOM05D005727 ORTHO05D007324 2.0e-82 309.7 189 76.2
A10p33800 Brassica napus HOM05D005727 ORTHO05D007324 2.6e-82 309.3 189 76.2
BcaC06g31951 Brassica carinata HOM05D005727 ORTHO05D007324 4.4e-82 308.5 189 75.7
BcaNung03307 Brassica carinata HOM05D005727 ORTHO05D007324 4.4e-82 308.5 229 67.7
BolC5t34584H Brassica oleracea HOM05D005727 ORTHO05D007324 4.4e-82 308.5 244 65.6
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 1.3e-81 307.0 259 64.5
BcaC05g29610 Brassica carinata HOM05D005727 ORTHO05D007324 1.7e-81 306.6 243 65.8
A05p40060 Brassica napus HOM05D005727 ORTHO05D007324 1.7e-81 306.6 243 65.8
C05p59120 Brassica napus HOM05D005727 ORTHO05D007324 1.7e-81 306.6 243 65.8
BraA10t45408Z Brassica rapa HOM05D005727 ORTHO05D007324 1.7e-81 306.6 189 75.1
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 2.2e-81 306.2 221 68.3
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 1.4e-80 303.5 240 67.1
Thhalv10023841m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 5.4e-80 301.6 198 72.2
MSTRG.5500 Avicennia marina HOM05D005727 ORTHO05D007324 4.6e-79 298.5 230 64.8
Sp6g41120 Schrenkiella parvula HOM05D005727 ORTHO05D007324 6.0e-79 298.1 245 62.9
Thhalv10022392m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 3.9e-78 295.4 243 63.4
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 3.9e-78 295.4 241 66.4
Lj3A941T101 Lonicera japonica HOM05D005727 ORTHO05D007324 1.1e-77 293.9 218 68.3
Actinidia32567 Actinidia chinensis HOM05D005727 ORTHO05D007324 3.3e-77 292.4 224 68.8
COL.COLO4_06480 Corchorus olitorius HOM05D005727 ORTHO05D007324 4.3e-77 292.0 221 67.9
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 1.2e-76 290.4 189 72.5
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 4.7e-76 288.5 220 68.2
Duzib268G0979 Durio zibethinus HOM05D005727 ORTHO05D007324 8.1e-76 287.7 200 72.5
SalBow5G2514 Salvia bowleyana HOM05D005727 ORTHO05D007324 9.8e-74 280.8 164 82.9
vmacro08938 Vaccinium macrocarpon HOM05D005727 ORTHO05D007324 9.8e-74 280.8 310 52.9
BcaC01g05776 Brassica carinata HOM05D005727 ORTHO05D007324 1.2e-71 273.9 187 71.7
Aa31LG5G11490 Aethionema arabicum HOM05D005727 ORTHO05D007324 1.6e-71 273.5 208 68.8
Pp3c23_18430 Physcomitrium patens HOM05D005727 ORTHO05D007324 7.8e-71 271.2 239 59.0
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 1.6e-68 263.5 189 63.0
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 1.8e-67 260.0 184 60.9
unitig_578.g15912 Utricularia gibba HOM05D005727 ORTHO05D007324 4.0e-67 258.8 184 70.1
SGA_v2.0_scaffold85G26621 Striga asiatica HOM05D005727 ORTHO05D007324 5.2e-67 258.5 166 74.1
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 3.8e-65 252.3 237 54.0
Rhsim04G0121700 Rhododendron simsii HOM05D005727 ORTHO05D007324 7.1e-64 248.1 367 42.0
MCO07G614 Micromonas commoda HOM05D005727 ORTHO05D007324 6.9e-59 231.5 183 59.6
Cre16.g691000 Chlamydomonas reinhardtii HOM05D005727 ORTHO05D007324 1.9e-53 213.4 183 55.2
MD04G1174600 Malus domestica HOM05D005727 ORTHO05D007324 3.6e-52 209.1 141 69.5
CDE04G3002 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 1.1e-48 197.6 126 80.2
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 8.1e-44 181.4 128 65.6
ClCG10G022720 Citrullus lanatus HOM05D005727 ORTHO05D007324 3.4e-42 176.0 105 78.1
Sopen10g027490 Solanum pennellii HOM05D005727 ORTHO05D007324 1.2e-39 167.5 105 76.2
Zm00001eb406060 Zea mays HOM05D005727 ORTHO05D007324 2.6e-26 123.2 75 77.3
PRCOL_00007056 Prasinoderma coloniale HOM05D005727 ORTHO05D007324 2.1e-23 113.6 167 40.1
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 1.9e-21 107.1 182 28.0
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 3.7e-20 102.8 183 28.4
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 1.4e-19 100.9 184 27.7
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 5.3e-19 99.0 182 25.8
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 9.1e-19 98.2 181 26.0
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 1.2e-18 97.8 183 25.7
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 4.5e-18 95.9 177 27.7
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 5.9e-18 95.5 165 30.3
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 1.0e-17 94.7 185 27.0
CDE04G0740 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 1.7e-17 94.0 62 74.2
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 2.9e-17 93.2 181 26.5
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 3.8e-17 92.8 181 26.5
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 1.9e-16 90.5 246 26.8
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 5.5e-16 89.0 186 27.4
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 2.7e-15 86.7 179 24.6
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 3.6e-15 86.3 190 25.8
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 7.9e-15 85.1 179 23.5
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 7.9e-15 85.1 179 24.0
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 2.3e-14 83.6 193 25.9
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 5.1e-14 82.4 224 23.2
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 1.1e-13 81.3 229 22.7
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 1.1e-13 81.3 164 28.7
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 1.1e-13 81.3 180 23.9
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 2.0e-13 80.5 180 23.3
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 2.6e-13 80.1 180 23.3
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 3.3e-13 79.7 237 22.8
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 5.7e-13 79.0 179 22.9
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 5.7e-13 79.0 231 24.7
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 9.7e-13 78.2 166 27.7
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 1.3e-12 77.8 209 22.5
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 1.3e-12 77.8 182 25.8
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 1.3e-12 77.8 182 24.2
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 1.7e-12 77.4 179 22.3
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 2.8e-12 76.6 227 22.5
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 4.8e-12 75.9 179 21.8
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 4.8e-12 75.9 179 21.8
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 8.2e-12 75.1 185 25.9
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 4.1e-11 72.8 235 24.7
SEGI_29867 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 4.1e-11 72.8 68 52.9
MBI04_g37007_MAGBIO Magnolia biondii HOM05D007418 ORTHO05D009419 6.9e-11 72.0 147 27.2
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 1.7e-09 67.4 236 25.8
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 2.2e-09 67.0 136 26.5
Ciclev10010465m.g Citrus clementina HOM05D005727 ORTHO05D007324 1.9e-08 63.9 40 77.5


User provided reference genes

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