Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 0.0e+00 1208.7 699 100.0
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 2.4e-237 825.9 732 67.5
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 4.5e-220 768.5 642 69.8
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 5.9e-220 768.1 706 63.7
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 1.5e-218 763.5 592 68.8
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 1.9e-218 763.1 594 68.7
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 4.2e-218 761.9 706 63.9
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 2.0e-212 743.0 710 64.9
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 3.5e-212 742.3 710 61.3
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 7.3e-210 734.6 587 67.1
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 2.3e-208 729.6 727 57.1
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 4.0e-208 728.8 637 62.6
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 6.8e-208 728.0 631 65.3
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 8.9e-208 727.6 713 62.8
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 3.7e-206 722.2 593 65.9
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 4.9e-206 721.8 637 62.5
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 3.2e-205 719.2 586 66.0
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 1.6e-204 716.8 722 57.9
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 1.0e-203 714.1 588 65.8
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.0e-203 712.6 714 62.0
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 1.1e-202 710.7 713 62.0
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 1.1e-202 710.7 714 61.9
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 1.1e-202 710.7 719 58.6
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 4.3e-202 708.8 716 57.0
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 1.2e-201 707.2 711 62.3
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 1.2e-201 707.2 714 61.6
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 4.7e-201 705.3 724 61.5
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 4.7e-201 705.3 586 64.2
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 6.8e-200 701.4 712 61.1
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 2.6e-199 699.5 711 60.9
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 4.4e-199 698.7 717 61.2
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 2.2e-198 696.4 713 61.0
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 4.9e-198 695.3 581 65.6
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 6.4e-198 694.9 583 64.7
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.9e-197 693.3 712 57.6
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.6e-196 690.3 581 65.6
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 1.7e-195 686.8 585 64.1
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 6.6e-195 684.9 713 58.8
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 8.6e-195 684.5 589 63.8
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 1.9e-194 683.3 642 64.5
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 4.3e-194 682.2 586 63.5
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 7.3e-194 681.4 675 61.2
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 2.1e-193 679.9 713 58.1
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 3.6e-193 679.1 714 59.9
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 6.2e-193 678.3 583 63.3
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 8.1e-193 677.9 589 63.3
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 5.8e-191 671.8 714 58.4
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 1.3e-190 670.6 726 55.4
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.7e-190 670.2 713 59.7
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 1.1e-189 667.5 710 56.6
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 1.9e-189 666.8 712 56.5
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 7.1e-189 664.8 591 63.1
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 2.1e-188 663.3 587 63.0
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 3.5e-188 662.5 580 61.7
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 4.6e-188 662.1 642 59.7
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 7.8e-188 661.4 714 58.1
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 2.5e-186 656.4 637 61.9
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 7.3e-186 654.8 625 59.8
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 1.4e-184 650.6 586 62.3
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 6.8e-184 648.3 711 55.4
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 1.2e-183 647.5 706 55.1
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 2.6e-183 646.4 622 59.5
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 4.4e-183 645.6 715 56.8
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 6.4e-182 641.7 579 59.6
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 5.4e-181 638.6 718 56.7
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 7.1e-181 638.3 582 61.5
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 9.2e-181 637.9 718 54.9
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 3.5e-180 636.0 593 60.4
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 4.3e-178 629.0 706 59.2
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 2.8e-177 626.3 579 59.6
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 8.1e-177 624.8 633 59.9
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 1.5e-175 620.5 631 59.0
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 4.4e-175 619.0 692 58.7
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 3.2e-173 612.8 706 55.0
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 4.6e-172 609.0 579 60.1
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 7.8e-172 608.2 534 61.8
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 3.0e-171 606.3 578 60.6
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 3.9e-171 605.9 582 58.2
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 6.6e-171 605.1 575 58.1
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 8.7e-171 604.7 607 58.0
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 1.1e-170 604.4 580 58.8
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 1.9e-170 603.6 582 58.4
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 9.6e-170 601.3 717 54.4
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 6.9e-168 595.1 579 57.0
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 2.6e-167 593.2 583 57.3
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.3e-166 590.9 608 58.1
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 2.2e-166 590.1 583 57.8
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 9.3e-165 584.7 582 57.4
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 2.7e-164 583.2 570 57.2
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.5e-164 582.8 631 54.5
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 3.0e-163 579.7 585 58.3
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 3.9e-163 579.3 579 57.9
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 8.7e-163 578.2 572 57.5
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 2.5e-162 576.6 581 58.2
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 4.3e-162 575.9 586 57.0
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 5.6e-162 575.5 554 59.9
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 4.8e-161 572.4 585 56.9
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 1.5e-159 567.4 586 56.3
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 2.0e-159 567.0 586 56.1
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 1.7e-158 563.9 580 56.4
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 5.5e-149 532.3 519 58.6
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 2.1e-148 530.4 546 56.8
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 1.9e-146 523.9 552 55.6
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 3.4e-143 513.1 577 52.9
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 8.5e-142 508.4 606 51.0
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 7.2e-141 505.4 582 51.2
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 1.5e-138 497.7 576 51.4
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 1.1e-136 491.5 512 55.7
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 5.3e-136 489.2 443 67.3
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 6.7e-115 419.1 341 67.7
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 4.8e-113 412.9 372 63.4
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 7.0e-112 409.1 402 58.7
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 1.0e-107 395.2 496 49.2
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 1.2e-106 391.7 573 41.9
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 1.1e-104 385.2 348 64.4
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 9.1e-104 382.1 336 62.5
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 8.6e-94 349.0 813 33.6
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 5.6e-93 346.3 784 34.4
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 7.5e-90 335.9 374 53.2
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 1.9e-80 304.7 357 51.0
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 2.3e-78 297.7 359 57.1
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 5.1e-78 296.6 391 48.6
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 1.2e-66 258.8 209 67.0
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 4.2e-64 250.4 414 41.1
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 2.6e-58 231.1 308 48.4
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 9.9e-58 229.2 209 59.8
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 1.2e-55 222.2 142 81.0
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 2.9e-49 201.1 305 44.6
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 2.3e-46 191.4 186 57.5
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.1e-45 189.1 201 48.8
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.5e-42 178.7 125 73.6
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 3.9e-38 164.1 289 39.8
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 6.7e-38 163.3 230 50.0
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 9.3e-32 142.9 124 62.9
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 1.3e-30 139.0 148 54.7
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 3.0e-22 111.3 364 26.4
PGSC0003DMG400027627 Solanum tuberosum HOM05D005511 ORTHO05D006616 5.0e-17 94.0 78 62.8
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 1.5e-08 65.9 50 60.0
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 3.6e-07 61.2 51 49.0
PRCOL_00003186 Prasinoderma coloniale HOM05D000032 ORTHO05D006970 3.9e-06 57.8 44 54.5


User provided reference genes

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