Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 7.8e-166 587.0 291 100.0
SalBow6G4874 Salvia bowleyana HOM05D000963 ORTHO05D005131 1.1e-42 177.9 145 70.3
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 1.7e-40 170.6 145 67.6
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.6e-38 162.9 151 63.6
Sc03g0007080 Simmondsia chinensis HOM05D000963 ORTHO05D005131 4.7e-38 162.5 145 66.2
LjContig00319g0011411 Lotus japonicus HOM05D000963 ORTHO05D005131 4.4e-36 156.0 96 84.4
RcHm_v2.0_MTg0499001 Rosa chinensis HOM05D003517 ORTHO05D009798 5.8e-36 155.6 136 65.4
Solyc00g021640.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 9.9e-36 154.8 150 60.0
Gorai.001G161800 Gossypium raimondii HOM05D003517 ORTHO05D009798 1.3e-35 154.5 140 63.6
Lsat_1_v5_gn_4_145420 Lactuca sativa HOM05D000963 ORTHO05D005131 2.9e-35 153.3 123 70.7
Ca_03776_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 3.8e-35 152.9 124 69.4
Ca_03777_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 3.8e-35 152.9 124 69.4
Hma1.2p1_0020F.1_g014220 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 1.3e-32 144.4 135 62.2
VMungo0464G1437 Vigna mungo HOM05D000963 ORTHO05D005131 1.9e-31 140.6 97 77.3
GSVIVG01006669001 Vitis vinifera HOM05D003517 ORTHO05D009798 1.5e-28 131.0 125 61.6
DCAR_001146 Daucus carota HOM05D000963 ORTHO05D005131 3.4e-28 129.8 204 47.5
SGA_v2.0_scaffold126G33874 Striga asiatica HOM05D000963 ORTHO05D005131 4.4e-28 129.4 91 73.6
Migut.D01399 Erythranthe guttata HOM05D000963 ORTHO05D011117 1.7e-27 127.5 138 58.0
Glyma.05G084600 Glycine max HOM05D000963 ORTHO05D005131 1.4e-26 124.4 120 59.2
TAR365G0238 Trochodendron aralioides HOM05D001325 ORTHO05D001540 1.4e-26 124.4 99 69.7
CAN.G110.13 Capsicum annuum HOM05D003517 ORTHO05D009798 2.4e-26 123.6 124 58.9
CAN.G85.23 Capsicum annuum HOM05D003517 ORTHO05D009798 2.4e-26 123.6 124 58.9
unitig_91.g26528 Utricularia gibba HOM05D000963 ORTHO05D005131 3.2e-26 123.2 147 53.1
Lalb_Chr00c24g0406771 Lupinus albus HOM05D003517 ORTHO05D009798 7.1e-26 122.1 122 59.8
unitig_87.g28036 Utricularia gibba HOM05D000963 ORTHO05D005131 9.3e-26 121.7 98 69.4
unitig_91.g26518 Utricularia gibba HOM05D001325 ORTHO05D001540 9.3e-26 121.7 98 69.4
vmacro22396 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 9.3e-26 121.7 98 69.4
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 1.6e-25 120.9 95 71.6
DCAR_032037 Daucus carota HOM05D000963 ORTHO05D005131 1.6e-25 120.9 95 71.6
Gohir.D03G074448 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.6e-25 120.9 95 71.6
Nitab4.5_0004841g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 3.5e-25 119.8 141 54.6
CAN.G1109.3 Capsicum annuum HOM05D003517 ORTHO05D009798 4.6e-25 119.4 122 59.0
Lj2P1236T76 Lonicera japonica HOM05D003517 ORTHO05D009798 6.0e-25 119.0 124 58.1
Hund25913 Selenicereus undatus HOM05D000963 ORTHO05D005131 7.8e-25 118.6 98 66.3
VMungo0985G0017 Vigna mungo HOM05D003517 ORTHO05D009798 1.0e-24 118.2 121 57.0
SGA_v2.0_scaffold893G53701 Striga asiatica HOM05D000963 ORTHO05D005131 1.3e-24 117.9 104 64.4
Gohir.A09G101420 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.7e-24 117.5 95 69.5
RhsimPtG0005500 Rhododendron simsii HOM05D000963 ORTHO05D005131 1.7e-24 117.5 98 67.3
vmacro22416 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.7e-24 117.5 94 70.2
vmacro22421 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.7e-24 117.5 94 70.2
Zm00001eb384400 Zea mays HOM05D003517 ORTHO05D009798 3.0e-24 116.7 124 53.2
Zm00001eb438100 Zea mays HOM05D003517 ORTHO05D009798 3.0e-24 116.7 124 53.2
Zm00001eb438980 Zea mays HOM05D003517 ORTHO05D009798 3.0e-24 116.7 124 53.2
Zm00001eb439060 Zea mays HOM05D003517 ORTHO05D009798 3.0e-24 116.7 124 53.2
Medtr0082s0030 Medicago truncatula HOM05D003517 ORTHO05D009798 3.9e-24 116.3 119 58.8
TPR.G20538 Trifolium pratense HOM05D003517 ORTHO05D009798 3.9e-24 116.3 119 58.8
Gohir.A12G092444 Gossypium hirsutum HOM05D000963 ORTHO05D005131 8.7e-24 115.2 95 68.4
LjContig00439g0008559 Lotus japonicus HOM05D003517 ORTHO05D009798 1.9e-23 114.0 119 58.0
Sc05g0004130 Simmondsia chinensis HOM05D000963 ORTHO05D005131 4.3e-23 112.8 115 58.3
Lalb_Chr22g0353801 Lupinus albus HOM05D003517 ORTHO05D009798 5.6e-23 112.5 122 55.7
HanXRQChr16g0504301 Helianthus annuus HOM05D003517 ORTHO05D009798 7.3e-23 112.1 124 54.8
HanXRQMTg0579381 Helianthus annuus HOM05D003517 ORTHO05D009798 7.3e-23 112.1 124 54.8
Lj5g0015285 Lotus japonicus HOM05D003517 ORTHO05D009798 7.3e-23 112.1 119 57.1
PGSC0003DMG400020295 Solanum tuberosum HOM05D000963 ORTHO05D005131 2.1e-22 110.5 98 66.3
AT2G07734 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 2.8e-22 110.2 125 56.0
ATMG00290 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 2.8e-22 110.2 125 56.0
SHI36398 Sapria himalayana HOM05D000963 ORTHO05D005131 3.6e-22 109.8 96 66.7
A04p09560 Brassica napus HOM05D003517 ORTHO05D009798 6.2e-22 109.0 122 56.6
BolSC28t60322H Brassica oleracea HOM05D003517 ORTHO05D009798 6.2e-22 109.0 122 56.6
BolSC28t60424H Brassica oleracea HOM05D003517 ORTHO05D009798 6.2e-22 109.0 122 56.6
BraSC48t46288Z Brassica rapa HOM05D003517 ORTHO05D009798 6.2e-22 109.0 122 56.6
BraSC48t46302Z Brassica rapa HOM05D003517 ORTHO05D009798 6.2e-22 109.0 122 56.6
Thhalv10023100m.g Eutrema salsugineum HOM05D003517 ORTHO05D009798 6.2e-22 109.0 122 56.6
Gorai.012G100900 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.1e-21 108.2 98 64.3
Medtr8g040260 Medicago truncatula HOM05D000963 ORTHO05D005131 1.4e-21 107.8 128 53.9
DCAR_001525 Daucus carota HOM05D000963 ORTHO05D005131 1.8e-21 107.5 88 69.3
Gohir.D04G090233 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.1e-21 106.7 98 63.3
Sc05g0004060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 6.9e-21 105.5 139 51.1
Sc05g0002290 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.5e-20 104.4 101 62.4
Cpa.g.sc389.2 Carica papaya HOM05D000963 ORTHO05D005131 2.6e-20 103.6 101 59.4
arahy.Tifrunner.gnm1.ann1.PT41Y0 Arachis hypogaea HOM05D003517 ORTHO05D009798 7.6e-20 102.1 113 56.6
Nitab4.5_0010321g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.3e-19 101.3 83 71.1
Sopen11g020190 Solanum pennellii HOM05D000963 ORTHO05D005131 1.7e-19 100.9 116 56.0
TAR633G0621 Trochodendron aralioides HOM05D000963 ORTHO05D005131 2.2e-19 100.5 82 67.1
EL10Ac7g18051 Beta vulgaris HOM05D003517 ORTHO05D009798 4.9e-19 99.4 124 49.2
CSS0000719 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D005131 8.4e-19 98.6 100 58.0
Gohir.D10G125850 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.1e-18 98.2 95 60.0
Sopen02g009100 Solanum pennellii HOM05D000963 ORTHO05D005131 1.1e-18 98.2 120 55.8
SGA_v2.0_scaffold648G53338 Striga asiatica HOM05D003517 ORTHO05D009798 1.4e-18 97.8 119 51.3
arahy.Tifrunner.gnm1.ann1.ZFFY2U Arachis hypogaea HOM05D000963 ORTHO05D005131 7.1e-18 95.5 94 57.4
PGSC0003DMG400046976 Solanum tuberosum HOM05D000963 ORTHO05D005131 1.2e-17 94.7 88 60.2
Gohir.D02G117532 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.6e-17 94.4 45 100.0
Sp3g25550 Schrenkiella parvula HOM05D003517 ORTHO05D009798 1.6e-17 94.4 112 54.5
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 6.0e-17 92.4 105 56.2
SGA_v2.0_scaffold420G51390 Striga asiatica HOM05D003517 ORTHO05D009798 1.1e-15 88.2 103 54.4
Gohir.A01G056250 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.5e-15 87.8 98 55.1
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 4.3e-15 86.3 182 39.6
Sc22g0004610 Simmondsia chinensis HOM05D000963 ORTHO05D011117 4.3e-15 86.3 114 47.4
Nitab4.5_0003945g0070 Nicotiana tabacum HOM05D003517 ORTHO05D009798 9.6e-15 85.1 105 52.4
Solyc01g017050.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 2.8e-14 83.6 41 97.6
C06p23110 Brassica napus HOM05D000963 ORTHO05D005131 3.7e-14 83.2 47 89.4
C09p24700 Brassica napus HOM05D000963 ORTHO05D005131 3.7e-14 83.2 47 89.4
C09p39380 Brassica napus HOM05D000963 ORTHO05D005131 3.7e-14 83.2 47 89.4
BraSC143t45666Z Brassica rapa HOM05D000963 ORTHO05D005131 3.7e-14 83.2 47 89.4
BraSC25t45900Z Brassica rapa HOM05D000963 ORTHO05D005131 3.7e-14 83.2 47 89.4
BraSC59t46558Z Brassica rapa HOM05D000963 ORTHO05D005131 3.7e-14 83.2 47 89.4
vmacro09302 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 6.2e-14 82.4 47 83.0
PSO585G0042 Papaver somniferum HOM05D003517 ORTHO05D009798 1.8e-13 80.9 115 44.3
BolSC46t60969H Brassica oleracea HOM05D000963 ORTHO05D005131 9.0e-13 78.6 42 92.9
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 9.0e-13 78.6 106 50.0
ECA169G0003 Erigeron canadensis HOM05D000963 ORTHO05D005131 9.0e-13 78.6 106 50.0
Sopen11g020200 Solanum pennellii HOM05D000004 ORTHO05D000002 9.0e-13 78.6 48 83.3
PGSC0003DMG400018892 Solanum tuberosum HOM05D000963 ORTHO05D005131 9.0e-13 78.6 106 50.0
unitig_8.g4106 Utricularia gibba HOM05D000963 ORTHO05D005131 9.0e-13 78.6 106 50.0
unitig_87.g27920 Utricularia gibba HOM05D000963 ORTHO05D001540 9.0e-13 78.6 106 50.0
arahy.Tifrunner.gnm1.ann1.G70FPN Arachis hypogaea HOM05D000963 ORTHO05D005131 1.2e-12 78.2 46 80.4
Dinv39831 Davidia involucrata HOM05D000963 ORTHO05D004715 2.0e-12 77.4 73 63.0
Nitab4.5_0000172g1110 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.0e-12 77.4 114 47.4
Solyc11g030940.3 Solanum lycopersicum HOM05D003517 ORTHO05D009798 2.6e-12 77.0 108 48.1
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 3.4e-12 76.6 98 50.0
EL10As10g23961 Beta vulgaris HOM05D000963 ORTHO05D005131 4.5e-12 76.3 145 38.6
Sc25g0002000 Simmondsia chinensis HOM05D000963 ORTHO05D005131 4.5e-12 76.3 73 61.6
CDE02G2642 Ceratophyllum demersum HOM05D000963 ORTHO05D005131 5.8e-12 75.9 41 90.2
PSO063G7170 Papaver somniferum HOM05D003517 ORTHO05D009798 5.8e-12 75.9 115 39.1
Potri.002G073450 Populus trichocarpa HOM05D000963 ORTHO05D005131 7.6e-12 75.5 75 61.3
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 1.0e-11 75.1 34 97.1
PGSC0003DMG400033608 Solanum tuberosum HOM05D003517 ORTHO05D009798 1.0e-11 75.1 35 94.3
BraA07t28395Z Brassica rapa HOM05D000963 ORTHO05D005131 2.2e-11 73.9 100 45.0
Gohir.A13G071500 Gossypium hirsutum HOM05D003517 ORTHO05D009798 2.9e-11 73.6 48 83.3
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 8.4e-11 72.0 51 70.6
Nn1g09918 Nelumbo nucifera HOM05D003517 ORTHO05D009798 1.1e-10 71.6 43 79.1
vmacro09305 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.1e-10 71.6 129 43.4
arahy.Tifrunner.gnm1.ann1.LAST4K Arachis hypogaea HOM05D000963 ORTHO05D005131 2.5e-10 70.5 76 55.3
DCAR_032455 Daucus carota HOM05D003517 ORTHO05D009798 2.5e-10 70.5 35 91.4
Manes.02G203601 Manihot esculenta HOM05D000963 ORTHO05D005131 3.2e-10 70.1 48 72.9
MBI13_g30267_MAGBIO Magnolia biondii HOM05D000571 ORTHO05D000435 5.5e-10 69.3 81 53.1
Nn1g10026 Nelumbo nucifera HOM05D003517 ORTHO05D009798 5.5e-10 69.3 35 88.6
Nn1g10028 Nelumbo nucifera HOM05D003517 ORTHO05D009798 5.5e-10 69.3 35 88.6
Oeu014166.1 Olea europaea HOM05D000963 ORTHO05D005131 7.1e-10 68.9 57 64.9
Nitab4.5_0000351g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009798 9.3e-10 68.6 43 76.7
Ca_14831_v3 Cicer arietinum L. HOM05D003517 ORTHO05D009798 1.2e-09 68.2 47 72.3
Nitab4.5_0000172g2150 Nicotiana tabacum HOM05D003517 ORTHO05D036924 2.1e-09 67.4 45 80.0
CsaV3_UNG208660 Cucumis sativus L. HOM05D003517 ORTHO05D009798 2.7e-09 67.0 35 85.7
Sc14g0005060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 4.6e-09 66.2 73 57.5
BraSC159t45733Z Brassica rapa HOM05D003517 ORTHO05D009798 6.0e-09 65.9 47 83.0
Zm00001eb436030 Zea mays HOM05D003517 ORTHO05D009798 7.9e-09 65.5 35 80.0
Cpa.g.sc86.15 Carica papaya HOM05D000963 ORTHO05D005131 3.0e-08 63.5 80 50.0
Gohir.D11G280866 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.0e-08 63.5 47 66.0
PGSC0003DMG400001215 Solanum tuberosum HOM05D000963 ORTHO05D005131 3.9e-08 63.2 101 45.5
PGSC0003DMG400036067 Solanum tuberosum HOM05D000963 ORTHO05D001540 3.9e-08 63.2 143 35.0
Lsat_1_v5_gn_7_67721 Lactuca sativa HOM05D003517 ORTHO05D009798 5.1e-08 62.8 35 82.9
Nitab4.5_0001152g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 8.7e-08 62.0 33 81.8
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 8.7e-08 62.0 91 46.2
SHI20131 Sapria himalayana HOM05D003517 ORTHO05D036924 8.7e-08 62.0 47 66.0
Gorai.005G078000 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.1e-07 61.6 79 51.9
Gorai.007G303200 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.1e-07 61.6 47 63.8
PGSC0003DMG400003919 Solanum tuberosum HOM05D000963 ORTHO05D005131 1.1e-07 61.6 81 44.4
vmacro21330 Vaccinium macrocarpon HOM05D000963 ORTHO05D014445 1.5e-07 61.2 44 75.0
SabraMtG0002700 Salix brachista HOM05D000890 ORTHO05D000697 3.3e-07 60.1 31 90.3
HanXRQChr10g0310901 Helianthus annuus HOM05D003517 ORTHO05D009798 7.4e-07 58.9 30 83.3
Oeu039801.1 Olea europaea HOM05D000963 ORTHO05D005131 7.4e-07 58.9 123 36.6
Oeu048363.1 Olea europaea HOM05D000963 ORTHO05D018542 3.7e-06 56.6 126 36.5


User provided reference genes

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