Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 1.7e-160 569.3 293 100.0
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 5.4e-98 361.7 292 64.0
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 2.0e-92 343.2 289 61.9
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 2.6e-92 342.8 285 63.2
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 2.8e-91 339.3 293 63.8
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 6.3e-91 338.2 301 59.8
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 2.4e-90 336.3 292 58.6
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 4.1e-90 335.5 282 61.3
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 1.6e-89 333.6 300 58.7
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.7e-89 332.8 257 63.0
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 1.0e-88 330.9 253 64.4
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 8.6e-88 327.8 281 63.3
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 1.9e-87 326.6 291 56.7
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 1.6e-86 323.6 292 57.2
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 1.0e-85 320.9 292 55.8
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.8e-85 320.1 293 56.3
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 2.3e-85 319.7 303 55.1
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 5.2e-85 318.5 296 55.4
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 4.4e-84 315.5 257 61.1
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 9.8e-84 314.3 254 61.4
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 9.8e-84 314.3 299 54.2
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 1.3e-83 313.9 297 54.5
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 3.7e-83 312.4 291 55.0
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 4.9e-83 312.0 255 60.4
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 4.9e-83 312.0 292 54.8
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 4.9e-83 312.0 294 54.8
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.4e-82 310.5 255 60.4
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 1.4e-82 310.5 295 55.3
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 3.2e-82 309.3 290 56.2
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 1.2e-81 307.4 291 55.3
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 1.6e-81 307.0 257 58.8
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 3.5e-81 305.8 250 59.6
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 3.5e-81 305.8 279 56.6
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 6.0e-81 305.1 336 52.7
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.0e-80 304.3 250 59.2
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 1.0e-80 304.3 267 56.9
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 1.3e-80 303.9 291 53.3
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 1.3e-80 303.9 292 54.1
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 2.3e-80 303.1 290 53.8
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 3.0e-80 302.8 291 54.0
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 5.0e-80 302.0 290 53.8
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 2.5e-79 299.7 273 56.0
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 4.3e-79 298.9 254 61.4
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 5.6e-79 298.5 249 60.2
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 9.5e-79 297.7 254 57.5
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 1.2e-78 297.4 293 51.9
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 2.8e-78 296.2 282 51.4
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 2.8e-78 296.2 302 52.0
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 8.0e-78 294.7 253 58.9
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 1.4e-77 293.9 291 53.3
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 3.1e-77 292.7 308 52.3
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 6.8e-77 291.6 291 52.2
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 1.5e-76 290.4 294 51.4
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 1.5e-76 290.4 278 52.2
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 2.0e-76 290.0 290 51.7
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 7.5e-76 288.1 293 50.5
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 2.2e-75 286.6 277 50.5
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.9e-75 286.2 306 50.3
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 2.9e-75 286.2 291 55.0
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 6.4e-75 285.0 272 56.6
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 8.3e-75 284.6 298 51.3
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 1.4e-74 283.9 256 55.1
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 7.0e-74 281.6 254 55.5
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 9.2e-74 281.2 283 54.4
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 9.2e-74 281.2 252 55.2
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.7e-73 279.6 293 50.2
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 6.0e-73 278.5 293 51.2
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 6.0e-73 278.5 430 41.9
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 1.0e-72 277.7 278 53.2
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 2.3e-72 276.6 250 54.0
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 8.6e-72 274.6 250 56.0
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 4.3e-71 272.3 250 53.6
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 5.6e-71 271.9 292 48.6
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 5.6e-71 271.9 250 55.2
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 7.3e-71 271.6 338 44.7
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 1.2e-70 270.8 277 49.8
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 3.1e-69 266.2 272 49.3
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 3.1e-69 266.2 244 52.9
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 6.8e-69 265.0 291 46.4
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 2.0e-68 263.5 276 47.5
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 5.8e-68 261.9 291 46.4
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 1.3e-67 260.8 251 50.6
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 2.2e-67 260.0 343 43.1
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 6.4e-67 258.5 265 52.5
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 8.3e-67 258.1 285 46.0
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 8.3e-67 258.1 282 48.2
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 8.3e-67 258.1 268 47.4
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 1.1e-66 257.7 293 46.4
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 1.9e-66 256.9 291 45.4
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 1.9e-66 256.9 276 46.0
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 2.4e-66 256.5 293 48.5
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 3.2e-66 256.1 295 45.8
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 5.4e-66 255.4 181 69.1
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 7.1e-66 255.0 275 47.3
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 4.6e-65 252.3 266 47.4
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 1.3e-64 250.8 341 41.9
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 1.7e-64 250.4 268 45.5
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 1.7e-64 250.4 268 45.5
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 5.1e-64 248.8 295 47.1
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 6.6e-64 248.4 290 47.9
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 2.5e-63 246.5 259 51.4
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 1.4e-61 240.7 260 50.8
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.4e-61 240.7 260 50.8
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.8e-61 240.4 260 50.8
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.6e-60 236.5 260 50.0
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 1.7e-59 233.8 174 67.8
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 2.9e-59 233.0 272 45.6
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.8e-59 232.6 295 45.1
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.4e-58 230.7 266 46.6
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 5.4e-58 228.8 291 40.9
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 7.1e-58 228.4 239 54.4
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 2.1e-57 226.9 174 66.7
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 2.3e-56 223.4 206 60.2
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 3.6e-54 216.1 225 51.1
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 1.4e-53 214.2 292 41.1
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 2.0e-52 210.3 250 46.8
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 7.6e-52 208.4 223 48.4
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.6e-46 189.5 188 54.8
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.9e-42 177.2 140 62.1
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 4.2e-42 176.0 266 39.5
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.5e-39 166.8 182 49.5
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.3e-38 164.5 157 52.2
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 1.8e-37 160.6 292 36.3
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 2.6e-36 156.8 329 31.6
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 7.6e-36 155.2 181 48.1
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 1.4e-34 151.0 291 34.7
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 2.5e-34 150.2 103 67.0
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.2e-34 149.8 124 58.9
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 3.2e-34 149.8 419 29.6
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 2.1e-33 147.1 172 45.9
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.1e-31 141.4 184 41.3
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 3.3e-31 139.8 129 52.7
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 1.6e-30 137.5 246 35.4
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 2.1e-30 137.1 215 38.6
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.6e-28 130.2 177 42.4
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 2.9e-27 126.7 250 32.4
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 8.4e-27 125.2 167 41.3
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.2e-25 121.3 239 36.8
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.1e-25 120.6 86 70.9
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 1.3e-24 117.9 236 31.8
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 1.8e-24 117.5 195 37.4
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.3e-22 111.3 115 57.4
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.7e-19 100.9 65 75.4
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 4.6e-17 92.8 226 31.0
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.8e-16 90.9 265 29.1
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 6.7e-16 89.0 145 35.2
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.5e-15 87.8 61 72.1
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 1.3e-14 84.7 145 33.8
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 1.3e-14 84.7 145 33.8
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 1.7e-14 84.3 66 60.6
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 3.7e-14 83.2 119 37.8
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 1.1e-13 81.6 61 60.7
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 2.2e-11 73.9 87 41.4
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 2.9e-11 73.6 132 31.8
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 7.2e-10 68.9 70 52.9
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 6.7e-08 62.4 38 73.7
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 1.5e-07 61.2 100 30.0
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 1.7e-06 57.8 66 45.5
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 8.2e-06 55.5 268 22.8


User provided reference genes

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