Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 3.5e-100 368.6 231 100.0
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 5.1e-59 231.9 224 65.2
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 1.8e-56 223.4 224 66.1
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 2.0e-55 219.9 224 65.6
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 2.0e-55 219.9 124 90.3
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 2.6e-55 219.5 227 66.1
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 4.4e-55 218.8 224 64.3
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 4.4e-55 218.8 224 64.7
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 9.9e-55 217.6 125 88.0
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 9.9e-55 217.6 222 62.6
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 1.7e-54 216.9 227 63.4
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 2.2e-54 216.5 229 60.3
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 2.2e-54 216.5 224 61.2
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 2.2e-54 216.5 125 88.0
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 2.2e-54 216.5 228 62.7
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 3.7e-54 215.7 224 60.7
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 1.9e-53 213.4 125 87.2
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.9e-53 213.4 125 87.2
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 1.9e-53 213.4 125 86.4
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.9e-53 213.4 237 61.2
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.9e-53 213.4 237 61.2
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 2.4e-53 213.0 226 61.9
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 2.4e-53 213.0 125 85.6
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.2e-53 212.6 230 65.2
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 3.2e-53 212.6 228 67.1
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 3.2e-53 212.6 125 85.6
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 5.4e-53 211.8 239 61.9
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 5.4e-53 211.8 125 84.0
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 5.4e-53 211.8 125 84.0
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 7.1e-53 211.5 124 83.9
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 7.1e-53 211.5 125 84.0
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 9.2e-53 211.1 227 61.2
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 9.2e-53 211.1 224 66.5
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 9.2e-53 211.1 224 66.5
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 9.2e-53 211.1 228 62.3
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.2e-52 210.7 233 60.5
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 1.6e-52 210.3 229 64.2
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 2.1e-52 209.9 234 62.4
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 2.7e-52 209.5 235 60.4
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 2.7e-52 209.5 226 62.4
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 3.5e-52 209.1 225 60.9
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 4.6e-52 208.8 226 60.2
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 4.6e-52 208.8 227 61.2
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 4.6e-52 208.8 224 64.3
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 6.0e-52 208.4 224 70.5
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.0e-51 207.6 233 57.1
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.0e-51 207.6 233 57.1
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 1.3e-51 207.2 225 62.2
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 1.3e-51 207.2 125 84.0
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.3e-51 207.2 224 59.8
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 1.7e-51 206.8 243 63.0
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 2.3e-51 206.5 122 84.4
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 2.3e-51 206.5 125 84.8
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 2.3e-51 206.5 223 61.9
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 3.0e-51 206.1 125 85.6
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 3.9e-51 205.7 224 57.6
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 3.9e-51 205.7 224 61.6
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 3.9e-51 205.7 226 59.7
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 5.1e-51 205.3 223 63.2
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.1e-50 204.1 233 54.5
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 1.1e-50 204.1 223 61.9
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 1.9e-50 203.4 227 59.5
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.5e-50 203.0 233 57.9
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 2.5e-50 203.0 231 64.1
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 3.3e-50 202.6 224 63.8
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 3.3e-50 202.6 124 82.3
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 4.3e-50 202.2 233 57.5
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 5.6e-50 201.8 125 81.6
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 5.6e-50 201.8 125 81.6
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 9.5e-50 201.1 125 81.6
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 9.5e-50 201.1 126 80.2
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 1.2e-49 200.7 231 62.8
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 1.6e-49 200.3 122 85.2
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 2.8e-49 199.5 224 59.8
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 2.8e-49 199.5 227 57.7
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 4.7e-49 198.7 252 63.5
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 6.2e-49 198.4 224 58.5
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 8.1e-49 198.0 224 59.4
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 8.1e-49 198.0 225 57.8
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 8.1e-49 198.0 224 60.7
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 1.4e-48 197.2 225 57.8
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 2.4e-48 196.4 253 61.7
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 2.4e-48 196.4 244 56.6
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 4.0e-48 195.7 226 65.5
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 4.0e-48 195.7 125 79.2
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 4.0e-48 195.7 230 61.3
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 1.2e-47 194.1 226 61.1
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 1.5e-47 193.7 228 57.5
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 2.6e-47 193.0 125 77.6
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 4.4e-47 192.2 125 77.6
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 4.4e-47 192.2 125 77.6
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 4.4e-47 192.2 125 77.6
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 4.4e-47 192.2 228 59.2
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 5.8e-47 191.8 125 76.8
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 7.6e-47 191.4 224 56.7
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.7e-46 190.3 125 76.0
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 2.9e-46 189.5 224 58.0
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 4.9e-46 188.7 125 80.0
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 4.9e-46 188.7 262 56.1
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.1e-45 187.6 224 57.1
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 1.4e-45 187.2 125 74.4
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 2.4e-45 186.4 123 75.6
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 3.2e-45 186.0 123 74.8
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 3.2e-45 186.0 123 74.8
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 5.4e-45 185.3 105 89.5
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 5.4e-45 185.3 218 59.6
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 9.2e-45 184.5 123 74.8
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 2.1e-44 183.3 153 68.0
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 2.7e-44 183.0 205 58.0
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 2.7e-44 183.0 132 73.5
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 2.3e-43 179.9 106 87.7
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 5.1e-43 178.7 207 60.4
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 3.3e-42 176.0 215 54.4
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 3.1e-40 169.5 125 71.2
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 2.0e-39 166.8 126 69.8
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 5.8e-39 165.2 230 49.1
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 1.4e-37 160.6 123 68.3
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.9e-37 160.2 125 64.8
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 2.4e-37 159.8 95 81.1
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 7.1e-37 158.3 123 64.2
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 1.6e-36 157.1 100 82.0
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 2.7e-36 156.4 225 47.6
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 6.0e-36 155.2 109 75.2
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 1.3e-35 154.1 124 62.9
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 2.3e-35 153.3 125 64.8
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.9e-35 152.5 96 80.2
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 6.6e-35 151.8 109 71.6
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 2.1e-33 146.7 113 69.0
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 2.1e-33 146.7 181 56.4
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 1.4e-32 144.1 109 70.6
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 2.6e-31 139.8 202 56.4
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 4.5e-31 139.0 131 60.3
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 2.9e-30 136.3 195 52.8
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 2.9e-30 136.3 122 61.5
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 6.4e-30 135.2 239 43.5
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 6.4e-30 135.2 239 43.5
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 2.4e-29 133.3 125 57.6
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 4.2e-29 132.5 128 58.6
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 7.1e-29 131.7 181 55.2
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 9.3e-29 131.3 125 60.0
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 1.6e-28 130.6 84 81.0
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 2.3e-27 126.7 103 59.2
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 4.8e-25 119.0 84 70.2
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 9.0e-24 114.8 82 74.4
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 2.6e-23 113.2 189 51.3
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 9.3e-21 104.8 79 69.6
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 1.6e-17 94.0 152 50.7
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 3.7e-17 92.8 74 64.9
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 4.5e-15 85.9 168 45.8
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 7.6e-15 85.1 48 81.2
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 1.1e-13 81.3 99 43.4
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 5.5e-13 79.0 148 46.6
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 2.7e-12 76.6 65 60.0
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 3.9e-11 72.8 104 38.5
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 7.4e-10 68.6 150 44.0
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 2.8e-09 66.6 105 41.0
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 4.8e-09 65.9 41 70.7
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 4.1e-08 62.8 37 75.7
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 5.9e-07 58.9 46 67.4


User provided reference genes

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