Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 4.0e-180 634.8 359 100.0
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 1.5e-113 413.7 259 80.7
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 3.2e-113 412.5 259 80.3
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 1.2e-110 404.1 255 79.6
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 7.5e-110 401.4 252 78.6
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 2.8e-109 399.4 314 65.0
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 8.3e-109 397.9 252 79.0
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 1.4e-108 397.1 252 77.4
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 1.8e-108 396.7 250 78.8
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 3.1e-108 396.0 252 77.4
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 4.1e-108 395.6 252 77.0
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 9.1e-108 394.4 258 74.8
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 1.2e-107 394.0 256 74.6
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 1.6e-107 393.7 248 78.2
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 2.0e-107 393.3 256 73.8
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 3.5e-107 392.5 259 74.9
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 4.5e-107 392.1 246 78.9
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 7.7e-107 391.3 250 78.4
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 1.0e-106 391.0 252 76.6
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.7e-106 390.2 246 78.0
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 2.3e-106 389.8 256 76.6
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 2.3e-106 389.8 240 80.0
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 2.3e-106 389.8 253 76.3
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 3.8e-106 389.0 251 75.7
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 5.0e-106 388.7 254 77.6
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 5.0e-106 388.7 249 77.1
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 8.6e-106 387.9 259 74.5
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 8.6e-106 387.9 250 77.2
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 1.1e-105 387.5 252 75.4
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 1.5e-105 387.1 250 77.6
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.5e-105 387.1 246 77.6
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 1.9e-105 386.7 252 77.4
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 1.9e-105 386.7 251 74.9
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.5e-105 386.3 251 76.9
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 2.5e-105 386.3 250 76.4
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 2.5e-105 386.3 252 75.4
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 3.3e-105 386.0 252 75.4
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 4.2e-105 385.6 241 79.7
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 4.2e-105 385.6 252 74.6
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 4.2e-105 385.6 251 74.5
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 5.5e-105 385.2 251 76.5
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 5.5e-105 385.2 257 74.3
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 5.5e-105 385.2 252 77.4
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 5.5e-105 385.2 252 75.4
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 7.2e-105 384.8 256 74.2
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 7.2e-105 384.8 256 74.6
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 1.2e-104 384.0 313 65.5
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 1.2e-104 384.0 252 76.2
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 1.6e-104 383.6 254 74.8
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 2.1e-104 383.3 255 75.7
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 3.6e-104 382.5 254 74.4
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 3.6e-104 382.5 253 74.7
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 4.7e-104 382.1 259 73.7
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 8.0e-104 381.3 258 74.4
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.0e-103 380.9 252 74.6
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 1.0e-103 380.9 251 75.3
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 3.0e-103 379.4 252 74.6
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 5.2e-103 378.6 256 74.6
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 6.8e-103 378.3 276 71.7
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.5e-102 377.1 251 74.1
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 7.5e-102 374.8 246 74.8
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 7.5e-102 374.8 252 71.8
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 2.8e-101 372.9 246 74.4
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 2.8e-101 372.9 245 74.7
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 3.7e-101 372.5 251 74.1
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 4.9e-101 372.1 256 72.3
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 4.9e-101 372.1 253 73.5
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 5.4e-100 368.6 240 76.2
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 2.7e-99 366.3 246 74.0
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 3.5e-99 365.9 252 71.4
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 3.5e-99 365.9 240 75.4
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 1.3e-98 364.0 268 69.8
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 2.3e-98 363.2 240 75.4
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 2.3e-98 363.2 240 74.6
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 2.3e-98 363.2 258 70.9
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 2.3e-98 363.2 258 70.9
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 2.3e-98 363.2 240 74.6
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 2.3e-98 363.2 257 72.0
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 2.9e-98 362.8 240 74.2
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 5.0e-98 362.1 240 75.0
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 5.0e-98 362.1 240 75.0
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 6.6e-98 361.7 241 73.4
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 1.5e-97 360.5 252 70.6
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.9e-97 360.1 252 70.6
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 1.9e-97 360.1 252 71.4
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 1.2e-96 357.5 248 70.6
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 2.1e-96 356.7 251 73.3
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 5.2e-95 352.1 252 71.0
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 8.9e-95 351.3 252 70.2
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 1.2e-94 350.9 252 71.0
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 2.6e-94 349.7 324 59.3
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 1.3e-93 347.4 244 66.4
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 6.2e-88 328.6 240 67.9
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 1.4e-87 327.4 262 64.5
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 3.1e-87 326.2 240 67.1
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 6.8e-87 325.1 240 66.7
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 3.4e-86 322.8 240 66.2
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 1.7e-82 310.5 208 73.6
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 3.1e-79 299.7 195 74.4
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 2.4e-76 290.0 251 61.8
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 1.2e-72 277.7 256 57.4
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 2.1e-72 276.9 252 56.7
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 1.4e-71 274.2 252 55.6
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 8.9e-71 271.6 257 52.5
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 3.4e-70 269.6 329 45.3
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 8.1e-64 248.4 162 75.3
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 1.0e-58 231.5 244 50.8
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 5.1e-58 229.2 194 58.8
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 4.8e-56 222.6 142 78.2
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.4e-55 221.1 163 69.9
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 6.0e-51 205.7 184 61.4
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 4.8e-48 196.1 159 64.2
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 1.2e-46 191.4 141 68.1
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 4.2e-44 183.0 125 73.6
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 3.0e-42 176.8 165 60.0
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 5.0e-37 159.5 164 55.5
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.1e-36 158.3 106 69.8
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.4e-36 157.9 184 51.6
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 1.9e-36 157.5 106 68.9
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 1.1e-33 148.3 106 67.9
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 7.4e-33 145.6 103 68.9
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.3e-29 134.8 97 70.1
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 3.8e-29 133.3 94 70.2
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 5.0e-29 132.9 102 60.8
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 4.6e-27 126.3 90 73.3
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 6.7e-26 122.5 71 74.6
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 2.8e-24 117.1 68 76.5
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 3.1e-23 113.6 200 35.0
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 7.7e-22 109.0 80 68.8
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 5.0e-21 106.3 86 64.0
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 6.5e-21 105.9 80 62.5
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 3.2e-20 103.6 87 66.7
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 4.4e-17 93.2 56 78.6
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 7.4e-17 92.4 91 57.1
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 3.7e-16 90.1 50 82.0
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.4e-15 88.2 56 80.4
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 5.3e-15 86.3 159 35.8
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.6e-14 84.0 183 31.7
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.6e-14 84.0 151 35.1
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 5.9e-14 82.8 99 54.5
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 5.2e-10 69.7 58 46.6
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 3.3e-09 67.0 42 66.7
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 1.8e-07 61.2 66 53.0
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 3.1e-07 60.5 44 68.2


User provided reference genes

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