Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G04194 Aquilegia oxysepala HOM05D007280 ORTHO05D009108 2.5e-166 589.7 595 100.0
Nn4g24834 Nelumbo nucifera HOM05D007280 ORTHO05D009108 9.9e-75 285.4 321 53.3
TAR622G0173 Trochodendron aralioides HOM05D007280 ORTHO05D009108 1.6e-72 278.1 320 51.6
GSVIVG01010259001 Vitis vinifera HOM05D007280 ORTHO05D009108 2.1e-69 267.7 221 60.6
GSVIVG01032336001 Vitis vinifera HOM05D007280 ORTHO05D009108 1.8e-68 264.6 221 60.2
PSO782G1316 Papaver somniferum HOM05D007280 ORTHO05D009108 1.6e-64 251.5 320 45.9
Haze_01575 Corylus avellana HOM05D007280 ORTHO05D009108 7.9e-64 249.2 325 46.8
Manes.17G093400 Manihot esculenta HOM05D007280 ORTHO05D009108 1.3e-63 248.4 322 46.6
PSO063G1027 Papaver somniferum HOM05D007280 ORTHO05D009108 3.9e-63 246.9 321 45.5
Prupe.1G342100 Prunus persica HOM05D007280 ORTHO05D009108 8.7e-63 245.7 319 46.1
Potri.010G098700 Populus trichocarpa HOM05D007280 ORTHO05D009108 1.1e-62 245.4 323 44.9
CiPaw.05G161600 Carya illinoinensis HOM05D007280 ORTHO05D009108 3.3e-62 243.8 290 50.7
Cpa.g.sc2.97 Carica papaya HOM05D007280 ORTHO05D009108 4.3e-62 243.4 278 47.1
MELO3C027064.2 Cucumis melo HOM05D007280 ORTHO05D009108 6.2e-61 239.6 277 47.7
CsaV3_5G017390 Cucumis sativus L. HOM05D007280 ORTHO05D009108 8.1e-61 239.2 296 45.6
ClCG01G006970 Citrullus lanatus HOM05D007280 ORTHO05D009108 1.4e-60 238.4 320 42.5
Cfa015100 Carpinus fangiana HOM05D007280 ORTHO05D009108 4.0e-60 236.9 325 45.2
Hma1.2p1_0319F.1_g123900 Hydrangea macrophylla HOM05D007280 ORTHO05D009108 6.9e-60 236.1 319 46.1
Sabra08G0108200 Salix brachista HOM05D007280 ORTHO05D009108 1.5e-59 235.0 321 42.4
Peaxi162Scf00329g00097 Petunia axillaris HOM05D007280 ORTHO05D009108 2.6e-59 234.2 285 46.0
Rhsim04G0168900 Rhododendron simsii HOM05D007280 ORTHO05D009108 2.6e-59 234.2 326 44.2
Sed0008466 Sechium edule HOM05D007280 ORTHO05D009108 1.0e-58 232.3 322 43.8
Sopen04g003730 Solanum pennellii HOM05D007280 ORTHO05D009108 8.4e-58 229.2 339 43.4
QL03p041451 Quercus lobata HOM05D007280 ORTHO05D009108 1.4e-57 228.4 323 45.2
Ciclev10004581m.g Citrus clementina HOM05D007280 ORTHO05D009108 2.5e-57 227.6 323 42.7
CDE04G3512 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 4.2e-57 226.9 292 46.6
Lj3P855T51 Lonicera japonica HOM05D007280 ORTHO05D009108 4.2e-57 226.9 266 47.4
PGSC0003DMG400031369 Solanum tuberosum HOM05D007280 ORTHO05D009108 4.2e-57 226.9 342 43.6
TWI74G1184 Tripterygium wilfordii HOM05D007280 ORTHO05D009108 4.2e-57 226.9 320 42.2
Gohir.D06G095050 Gossypium hirsutum HOM05D007280 ORTHO05D009108 7.1e-57 226.1 291 43.0
Gohir.D09G108900 Gossypium hirsutum HOM05D007280 ORTHO05D009108 7.1e-57 226.1 291 43.0
Sabra10G0071200 Salix brachista HOM05D007280 ORTHO05D009108 7.1e-57 226.1 316 42.1
DCAR_023520 Daucus carota HOM05D007280 ORTHO05D009108 9.3e-57 225.7 328 41.8
Solyc04g008570.4 Solanum lycopersicum HOM05D007280 ORTHO05D009108 9.3e-57 225.7 339 42.8
Gorai.006G126500 Gossypium raimondii HOM05D007280 ORTHO05D009108 1.2e-56 225.3 291 42.6
Cc11_g02870 Coffea canephora HOM05D007280 ORTHO05D009108 1.0e-55 222.2 326 42.3
COL.COLO4_36459 Corchorus olitorius HOM05D007280 ORTHO05D009108 1.5e-54 218.4 289 44.3
Gohir.A09G112200 Gossypium hirsutum HOM05D007280 ORTHO05D009108 2.5e-54 217.6 228 47.4
Psat6g095680 Pisum sativum HOM05D007280 ORTHO05D009108 9.6e-54 215.7 290 44.1
VMungo1215G2162 Vigna mungo HOM05D007280 ORTHO05D009108 2.1e-53 214.5 267 46.4
Thecc.09G239200 Theobroma cacao HOM05D007280 ORTHO05D009108 4.8e-53 213.4 321 40.8
CAN.G458.1 Capsicum annuum HOM05D007280 ORTHO05D009108 1.8e-52 211.5 348 42.0
Potri.008G142900 Populus trichocarpa HOM05D007280 ORTHO05D009108 3.1e-52 210.7 303 40.9
Phvul.003G013000 Phaseolus vulgaris HOM05D007280 ORTHO05D009108 5.3e-52 209.9 322 41.3
CDE08G0845 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 1.5e-51 208.4 316 42.1
HanXRQChr16g0526501 Helianthus annuus HOM05D007280 ORTHO05D009108 5.9e-51 206.5 332 41.0
Sabra08G0108600 Salix brachista HOM05D007280 ORTHO05D009108 1.3e-50 205.3 294 41.8
MD13G1010900 Malus domestica HOM05D007280 ORTHO05D009108 2.2e-50 204.5 318 39.0
TPR.G35854 Trifolium pratense HOM05D007280 ORTHO05D009108 3.8e-50 203.8 290 41.4
MD16G1008400 Malus domestica HOM05D007280 ORTHO05D009108 6.5e-50 203.0 318 40.6
Ca_12458_v3 Cicer arietinum L. HOM05D007280 ORTHO05D009108 3.2e-49 200.7 322 40.1
Glyma.20G010600 Glycine max HOM05D007280 ORTHO05D009108 4.2e-49 200.3 272 43.8
ATR0705G126 Amborella trichopoda HOM05D007280 ORTHO05D009108 7.2e-49 199.5 268 41.4
Lj2g0005518 Lotus japonicus HOM05D007280 ORTHO05D009108 9.3e-49 199.1 321 40.2
Medtr1g033840 Medicago truncatula HOM05D007280 ORTHO05D009108 1.6e-48 198.4 278 42.8
THA.LOC104819105 Tarenaya hassleriana HOM05D007280 ORTHO05D009108 7.9e-48 196.1 298 39.6
FAN12G0470 Fragaria x ananassa HOM05D007280 ORTHO05D009108 1.0e-47 195.7 316 40.8
MSTRG.17728 Avicennia marina HOM05D007280 ORTHO05D009108 3.0e-47 194.1 340 39.7
Lsat_1_v5_gn_4_26101 Lactuca sativa HOM05D007280 ORTHO05D009108 3.0e-47 194.1 235 45.1
Glyma.07G177100 Glycine max HOM05D007280 ORTHO05D009108 3.9e-47 193.7 267 42.7
Dinv17118 Davidia involucrata HOM05D007280 ORTHO05D009108 5.1e-47 193.4 202 50.5
CSS0013384 Camellia sinensis var. sinensis HOM05D007280 ORTHO05D009108 8.7e-47 192.6 345 38.3
FvH4_4g36140 Fragaria vesca HOM05D007280 ORTHO05D009108 8.7e-47 192.6 316 39.2
FAN07G2371 Fragaria x ananassa HOM05D007280 ORTHO05D009108 3.3e-46 190.7 312 39.7
Oeu006355.1 Olea europaea HOM05D007280 ORTHO05D009108 3.3e-46 190.7 230 47.0
Lalb_Chr17g0338341 Lupinus albus HOM05D007280 ORTHO05D009108 1.6e-45 188.3 291 41.9
SalBow3G1417 Salvia bowleyana HOM05D007280 ORTHO05D009108 1.6e-45 188.3 333 37.5
Aa31sc65G20 Aethionema arabicum HOM05D007280 ORTHO05D009108 2.8e-45 187.6 297 42.1
Duzib168G0083 Durio zibethinus HOM05D007280 ORTHO05D009108 4.1e-44 183.7 290 40.0
Eucgr.B02618 Eucalyptus grandis HOM05D007280 ORTHO05D009108 5.3e-44 183.3 309 39.8
Migut.N02514 Erythranthe guttata HOM05D007280 ORTHO05D009108 6.5e-42 176.4 265 41.1
AL6G24390 Arabidopsis lyrata HOM05D007280 ORTHO05D009108 9.4e-41 172.6 232 42.7
MBI03_g37599_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 9.4e-41 172.6 225 47.6
PGR044G2110 Punica granatum HOM05D007280 ORTHO05D009108 9.4e-41 172.6 237 43.5
AT5G13770 Arabidopsis thaliana HOM05D007280 ORTHO05D009108 1.2e-40 172.2 231 42.9
Thhalv10016019m.g Eutrema salsugineum HOM05D007280 ORTHO05D009108 2.1e-40 171.4 232 43.1
Carub.0006s1195 Capsella rubella HOM05D007280 ORTHO05D009108 1.8e-39 168.3 232 41.4
Sp6g30250 Schrenkiella parvula HOM05D007280 ORTHO05D009108 5.1e-39 166.8 232 41.4
A02p02170 Brassica napus HOM05D007280 ORTHO05D009108 1.5e-38 165.2 229 40.6
BraA02t05191Z Brassica rapa HOM05D007280 ORTHO05D009108 2.6e-38 164.5 229 40.2
Ah.13g070140 Amaranthus hybridus HOM05D007280 ORTHO05D009108 4.4e-38 163.7 268 37.7
C02p06420 Brassica napus HOM05D007280 ORTHO05D009108 5.7e-38 163.3 230 40.9
BolC2t06588H Brassica oleracea HOM05D007280 ORTHO05D009108 5.7e-38 163.3 230 40.9
ECA246G2688 Erigeron canadensis HOM05D007280 ORTHO05D009108 4.1e-36 157.1 244 40.2
Lsat_1_v5_gn_3_27640 Lactuca sativa HOM05D007280 ORTHO05D009108 2.6e-35 154.5 265 37.7
Os04g0583101 Oryza sativa ssp. japonica HOM05D007280 ORTHO05D009108 5.9e-35 153.3 232 38.4
CARHR199670 Cardamine hirsuta HOM05D007280 ORTHO05D009108 2.9e-34 151.0 213 42.3
BcaNung04186 Brassica carinata HOM05D007280 ORTHO05D009108 1.6e-32 145.2 271 36.5
AUR62006107 Chenopodium quinoa HOM05D007280 ORTHO05D009108 2.0e-30 138.3 268 34.7
AUR62019383 Chenopodium quinoa HOM05D007280 ORTHO05D009108 2.2e-29 134.8 268 34.0
Sc14g0006690 Simmondsia chinensis HOM05D007280 ORTHO05D009108 6.3e-29 133.3 208 38.9
Ciclev10006779m.g Citrus clementina HOM05D007280 ORTHO05D009108 3.1e-28 131.0 103 61.2
Zm00001eb072910 Zea mays HOM05D007280 ORTHO05D009108 1.2e-27 129.0 232 34.1
Nitab4.5_0003882g0050 Nicotiana tabacum HOM05D007280 ORTHO05D009108 7.7e-27 126.3 103 60.2
Nitab4.5_0000129g0410 Nicotiana tabacum HOM05D007280 ORTHO05D009108 2.2e-26 124.8 103 59.2
QL11p025101 Quercus lobata HOM05D007280 ORTHO05D009108 6.5e-26 123.2 105 59.0
Ah.07g205740 Amaranthus hybridus HOM05D007280 ORTHO05D009108 2.0e-22 111.7 266 30.5
QL11p025168 Quercus lobata HOM05D007280 ORTHO05D009108 1.7e-21 108.6 90 54.4
RcHm_v2.0_Chr4g0445881 Rosa chinensis HOM05D007280 ORTHO05D009108 8.5e-18 96.3 282 31.2
MBI03_g37600_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 1.6e-08 65.5 44 70.5
FAN22G2182 Fragaria x ananassa HOM05D007280 ORTHO05D009108 1.4e-07 62.4 44 68.2
GSVIVG01020058001 Vitis vinifera HOM05D000001 ORTHO05D010008 1.8e-07 62.0 115 33.9
PSO384G0923 Papaver somniferum HOM05D000001 ORTHO05D000003 6.8e-07 60.1 197 25.9
CANSAT01G2277 Cannabis sativa HOM05D007486 ORTHO05D003673 8.8e-07 59.7 124 32.3
CANSAT01G2464 Cannabis sativa HOM05D007486 ORTHO05D003673 8.8e-07 59.7 171 27.5
MD05G1166500 Malus domestica HOM05D007486 ORTHO05D003673 8.8e-07 59.7 150 30.0
QL02p059847 Quercus lobata HOM05D000001 ORTHO05D010426 1.2e-06 59.3 138 28.3
PSO339G4131 Papaver somniferum HOM05D000001 ORTHO05D000003 2.0e-06 58.5 158 27.2
TAR626G1324 Trochodendron aralioides HOM05D000001 ORTHO05D000003 3.4e-06 57.8 122 31.1
Carub.0005s0166 Capsella rubella HOM05D000001 ORTHO05D010008 4.4e-06 57.4 115 31.3
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 4.4e-06 57.4 122 33.6
Migut.B00932 Erythranthe guttata HOM05D000001 ORTHO05D009381 4.4e-06 57.4 109 33.0
Solyc11g011860.1 Solanum lycopersicum HOM05D000001 ORTHO05D010426 4.4e-06 57.4 138 29.7
Sopen11g006690 Solanum pennellii HOM05D000001 ORTHO05D010426 4.4e-06 57.4 138 29.7
vmacro20492 Vaccinium macrocarpon HOM05D000001 ORTHO05D010426 4.4e-06 57.4 169 26.0
Ciclev10007460m.g Citrus clementina HOM05D003056 ORTHO05D003422 5.7e-06 57.0 155 25.2
Ciclev10014627m.g Citrus clementina HOM05D000001 ORTHO05D000003 7.5e-06 56.6 140 27.9
ECA234G4111 Erigeron canadensis HOM05D007280 ORTHO05D009108 7.5e-06 56.6 39 66.7
THA.LOC104801784 Tarenaya hassleriana HOM05D000001 ORTHO05D010008 7.5e-06 56.6 122 32.0
TWI09G1010 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 7.5e-06 56.6 157 24.8
Dinv27222 Davidia involucrata HOM05D000001 ORTHO05D010579 9.8e-06 56.2 143 25.2
PGSC0003DMG400013262 Solanum tuberosum HOM05D000001 ORTHO05D010426 9.8e-06 56.2 138 29.0


User provided reference genes

Program Settings