Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 3546.5 1835 100.0
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2556.2 1890 72.2
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2520.3 1897 71.5
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2518.8 1907 71.6
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2479.1 1859 71.7
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2456.4 1707 76.2
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2452.6 1897 69.5
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2411.3 1858 70.0
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2407.1 1901 69.3
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2398.2 1906 68.0
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2383.6 1888 68.5
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2378.6 1886 68.1
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2360.5 1907 67.6
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2352.4 1885 67.7
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 2352.0 1887 67.1
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 2346.6 1907 66.9
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 2344.3 1906 66.6
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2344.3 1904 67.3
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2343.5 1898 67.3
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2340.5 1891 67.7
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2330.4 1881 66.9
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2323.5 1893 67.7
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2321.6 1889 67.3
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2320.0 1897 66.8
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2312.3 1898 66.6
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2309.3 1893 67.2
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2308.9 1889 66.2
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 2299.6 1877 66.9
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2291.2 1898 66.6
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2287.7 1904 65.8
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2285.0 1881 67.4
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2281.5 1885 66.8
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 2281.5 1900 65.6
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2280.4 1883 66.1
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2277.7 1897 64.9
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2271.5 1928 65.0
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2271.5 1896 65.5
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2270.0 1886 65.7
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2268.0 1897 65.0
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2260.7 1882 65.4
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 2260.0 2117 60.3
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2250.3 1901 64.8
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2235.7 1884 65.5
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2234.1 1877 65.2
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2229.1 1948 63.7
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2210.6 1940 63.6
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 2202.9 1890 65.4
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2199.9 1991 62.3
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2195.6 1860 65.5
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 2193.7 1890 65.1
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2193.3 1869 65.4
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 2181.4 1890 64.9
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2171.4 1740 68.9
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2166.7 2104 59.9
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2164.0 1882 64.0
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2158.6 1897 63.7
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2148.2 1883 63.3
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2133.6 1887 63.1
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 2132.8 1891 62.8
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2127.4 1740 67.9
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2122.4 2236 55.4
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2118.2 1905 62.6
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2103.9 1854 63.6
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2102.0 1778 65.2
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2101.6 1906 62.0
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 2086.2 1892 61.9
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 2077.4 1975 60.6
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 2076.6 1888 61.9
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2075.4 1882 62.2
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 2059.3 1956 60.0
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2058.1 1904 61.6
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 2055.4 1882 61.8
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 2055.0 1894 61.5
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2052.7 1879 61.6
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 2052.3 1908 61.2
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2048.5 1906 61.1
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 2048.1 1876 62.0
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 2044.2 1879 61.5
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2037.3 1912 60.8
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 2035.0 1885 61.1
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 2020.4 1922 60.0
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2008.0 1912 60.5
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 1994.9 1866 60.7
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1975.7 1325 75.9
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 1960.3 1796 61.4
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 1959.9 1895 59.8
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 1916.7 1886 59.1
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1892.9 1998 55.6
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1863.2 1864 56.7
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1831.6 1516 67.4
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1809.7 1981 53.7
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1744.9 1507 66.0
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1708.3 1819 54.0
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1672.1 1878 52.8
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1604.0 1872 52.1
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1443.7 939 78.8
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1370.1 1083 69.2
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1327.0 1259 61.4
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1307.7 1212 61.9
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1307.7 1283 60.0
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1282.7 1464 53.8
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1233.4 854 74.7
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1191.8 1207 58.4
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1155.2 940 66.0
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 2.0e-307 1060.1 1253 47.3
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 2.1e-293 1013.4 1130 55.3
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 6.8e-292 1008.4 676 76.2
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 8.6e-287 991.5 1096 54.9
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 3.3e-270 936.4 678 71.5
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 3.1e-220 770.4 956 51.9
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 1.2e-219 768.5 1327 38.4
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 4.4e-206 723.4 864 52.8
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 9.2e-204 715.7 450 81.6
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 3.5e-195 687.2 1116 42.6
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 1.6e-168 598.6 375 80.5
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 2.4e-156 558.1 1335 32.3
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 3.7e-152 544.3 367 76.8
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 7.1e-148 530.0 372 74.2
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.9e-140 505.4 368 72.8
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.6e-107 396.0 500 49.6
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 1.5e-105 389.4 285 68.8
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 2.9e-101 375.2 552 47.6
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 9.8e-97 360.1 1410 25.7
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 1.6e-91 342.8 214 78.5
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 5.2e-90 337.8 240 72.5
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.3e-85 323.2 263 66.2
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 1.1e-84 320.1 298 58.1
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 4.7e-83 314.7 199 78.9
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 1.8e-82 312.8 1500 24.8
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 1.6e-70 273.1 265 56.6
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 1.3e-69 270.0 521 43.6
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 8.6e-69 267.3 170 77.1
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 1.1e-63 250.4 229 63.3
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 6.0e-62 244.6 569 35.0
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 1.0e-53 217.2 244 54.9
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 2.5e-52 212.6 163 65.6
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 1.2e-51 210.3 191 59.7
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 3.6e-51 208.8 237 51.5
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.1e-50 207.2 170 61.2
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.9e-48 199.1 275 47.3
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 8.1e-43 181.0 223 49.8
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 1.6e-38 166.8 405 37.0
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 2.8e-35 156.0 107 72.0
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 2.4e-34 152.9 89 78.7
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 1.9e-28 133.3 108 69.4
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 6.2e-27 128.3 75 88.0
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 3.1e-26 125.9 105 68.6
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 3.1e-26 125.9 113 60.2
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 1.5e-25 123.6 118 57.6
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 5.8e-25 121.7 87 70.1
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 1.7e-24 120.2 69 88.4
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 1.0e-21 110.9 69 76.8
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 1.1e-20 107.5 76 75.0
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 1.1e-18 100.9 88 60.2
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 9.0e-18 97.8 82 59.8
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 9.0e-18 97.8 107 54.2
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 3.4e-17 95.9 128 48.4
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 1.0e-16 94.4 58 79.3
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 1.0e-16 94.4 58 79.3
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 8.5e-16 91.3 58 77.6
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 7.2e-15 88.2 143 43.4
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 3.0e-13 82.8 41 92.7
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 4.8e-11 75.5 74 52.7
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 6.3e-11 75.1 56 67.9
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 1.8e-10 73.6 50 78.0
TAR371G1101 Trochodendron aralioides HOM05D003986 ORTHO05D004916 2.4e-10 73.2 119 43.7
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 2.0e-09 70.1 89 44.9
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 7.7e-09 68.2 204 33.3
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 1.0e-08 67.8 80 50.0
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 8.5e-08 64.7 73 53.4
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 7.2e-07 61.6 69 43.5
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 2.1e-06 60.1 59 54.2


User provided reference genes

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