Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.4e-92 343.2 209 100.0
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 2.0e-38 163.3 153 62.7
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.7e-34 150.2 147 57.8
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 2.3e-34 149.8 149 57.7
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 3.0e-34 149.4 189 51.9
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 3.0e-34 149.4 163 53.4
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 2.5e-33 146.4 137 59.1
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 5.6e-33 145.2 188 52.7
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 2.1e-32 143.3 194 51.0
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 3.6e-32 142.5 146 58.2
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 1.1e-31 141.0 130 63.8
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.8e-31 140.2 215 46.0
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 1.8e-31 140.2 173 53.8
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 6.9e-31 138.3 157 49.0
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 1.2e-30 137.5 211 51.7
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 1.2e-30 137.5 101 72.3
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 1.2e-30 137.5 171 55.0
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 1.2e-30 137.5 186 48.9
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.5e-30 137.1 140 63.6
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 2.6e-30 136.3 181 53.6
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 2.6e-30 136.3 187 51.3
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 7.6e-30 134.8 187 48.7
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 1.7e-29 133.7 195 52.3
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 1.7e-29 133.7 199 50.8
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 1.7e-29 133.7 187 53.5
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 8.4e-29 131.3 168 51.2
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 8.4e-29 131.3 168 51.2
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 8.4e-29 131.3 146 56.2
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 1.9e-28 130.2 190 46.8
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 3.2e-28 129.4 125 60.0
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 5.4e-28 128.6 184 50.0
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 7.1e-28 128.3 189 45.0
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 1.2e-27 127.5 110 62.7
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 3.5e-27 125.9 102 69.6
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 3.5e-27 125.9 92 69.6
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 1.8e-26 123.6 174 47.1
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 3.9e-26 122.5 157 49.0
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 3.9e-26 122.5 142 51.4
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 5.1e-26 122.1 200 48.5
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.9e-25 120.2 91 68.1
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 3.3e-25 119.4 186 48.9
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 5.6e-25 118.6 91 67.0
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 9.6e-25 117.9 125 59.2
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 9.6e-25 117.9 125 52.8
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 9.6e-25 117.9 125 52.8
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 1.6e-24 117.1 91 65.9
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 3.7e-24 115.9 91 64.8
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 3.7e-24 115.9 128 57.0
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 8.1e-24 114.8 132 56.1
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 1.1e-23 114.4 102 62.7
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 1.4e-23 114.0 91 64.8
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 1.8e-23 113.6 127 55.1
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 9.0e-23 111.3 119 58.0
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 3.4e-22 109.4 208 45.7
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 3.2e-20 102.8 110 54.5
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 5.5e-20 102.1 91 57.1
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 1.2e-19 100.9 92 55.4
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 2.1e-19 100.1 89 55.1
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 2.7e-19 99.8 160 43.8
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 4.6e-19 99.0 160 43.1
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 6.0e-19 98.6 179 43.0
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 7.9e-19 98.2 104 49.0
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 7.9e-19 98.2 111 53.2
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 7.9e-19 98.2 89 56.2
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 7.9e-19 98.2 182 41.2
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.0e-18 97.8 127 45.7
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 1.3e-18 97.4 87 55.2
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 1.3e-18 97.4 115 47.8
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 1.3e-18 97.4 108 49.1
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 1.3e-18 97.4 89 57.3
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 1.8e-18 97.1 91 52.7
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 1.8e-18 97.1 89 55.1
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 2.3e-18 96.7 111 55.0
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 2.3e-18 96.7 111 55.0
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 2.3e-18 96.7 89 56.2
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 2.3e-18 96.7 89 56.2
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 2.3e-18 96.7 89 56.2
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 2.3e-18 96.7 87 58.6
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 2.3e-18 96.7 155 41.9
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 3.0e-18 96.3 85 57.6
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 3.0e-18 96.3 103 54.4
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 3.0e-18 96.3 91 53.8
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 3.9e-18 95.9 89 52.8
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 3.9e-18 95.9 89 56.2
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 3.9e-18 95.9 115 47.0
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 3.9e-18 95.9 107 46.7
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 3.9e-18 95.9 87 56.3
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 5.1e-18 95.5 89 55.1
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 5.1e-18 95.5 89 55.1
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 6.7e-18 95.1 133 45.9
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 6.7e-18 95.1 87 54.0
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 6.7e-18 95.1 91 54.9
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 6.7e-18 95.1 111 54.1
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 8.7e-18 94.7 87 54.0
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 8.7e-18 94.7 85 56.5
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 8.7e-18 94.7 87 54.0
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 8.7e-18 94.7 115 47.0
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 1.1e-17 94.4 88 54.5
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 1.1e-17 94.4 111 54.1
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 1.1e-17 94.4 91 54.9
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 1.1e-17 94.4 91 52.7
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 1.1e-17 94.4 89 52.8
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 1.1e-17 94.4 87 54.0
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 1.5e-17 94.0 87 55.2
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 1.5e-17 94.0 91 50.5
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 1.9e-17 93.6 89 55.1
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 1.9e-17 93.6 87 55.2
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 1.9e-17 93.6 87 52.9
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 2.5e-17 93.2 91 53.8
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 2.5e-17 93.2 91 53.8
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 2.5e-17 93.2 111 53.2
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 2.5e-17 93.2 91 53.8
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 2.5e-17 93.2 111 53.2
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 2.5e-17 93.2 111 54.1
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 2.5e-17 93.2 91 53.8
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.5e-17 93.2 84 57.1
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 3.3e-17 92.8 89 55.1
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 3.3e-17 92.8 89 55.1
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 3.3e-17 92.8 89 55.1
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 3.3e-17 92.8 89 55.1
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 7.4e-17 91.7 85 54.1
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 7.4e-17 91.7 117 46.2
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 9.6e-17 91.3 66 71.2
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 9.6e-17 91.3 96 52.1
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.3e-16 90.9 180 38.9
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.3e-16 90.9 86 54.7
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 1.6e-16 90.5 88 53.4
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.6e-16 90.5 89 55.1
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 2.1e-16 90.1 186 39.2
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 2.1e-16 90.1 96 56.2
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 4.8e-16 89.0 177 40.7
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 1.1e-15 87.8 85 52.9
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 1.8e-15 87.0 184 39.1
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 3.1e-15 86.3 177 41.2
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 1.5e-14 84.0 129 46.5
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 3.4e-14 82.8 189 41.8
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.0e-13 81.3 108 45.4
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 1.3e-13 80.9 164 42.7
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 1.7e-13 80.5 101 43.6
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 5.0e-13 79.0 72 61.1
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 6.5e-13 78.6 84 48.8
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 1.1e-12 77.8 101 55.4
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 5.5e-12 75.5 73 49.3
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 1.6e-11 73.9 69 52.2
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 1.6e-11 73.9 168 38.7
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 1.0e-10 71.2 60 63.3
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 5.1e-10 68.9 105 38.1
CSS0038746 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 5.1e-10 68.9 81 59.3
Nitab4.5_0013199g0010 Nicotiana tabacum HOM05D004087 ORTHO05D004787 5.1e-10 68.9 105 52.4
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 8.7e-10 68.2 60 56.7
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 1.9e-09 67.0 61 59.0
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 5.7e-09 65.5 68 52.9
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 9.7e-09 64.7 60 56.7
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 9.7e-09 64.7 204 33.8
TWI36G1524 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 9.7e-09 64.7 125 40.8
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 2.8e-08 63.2 80 50.0
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 2.8e-08 63.2 121 33.9
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 3.7e-08 62.8 60 53.3
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 6.3e-08 62.0 60 50.0
Gohir.A04G096700 Gossypium hirsutum HOM05D004087 ORTHO05D004787 2.4e-07 60.1 88 45.5
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 2.0e-06 57.0 53 52.8


User provided reference genes

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