Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.5e-80 302.8 148 100.0
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.7e-71 272.7 132 100.0
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.7e-71 272.7 132 100.0
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.8e-70 269.2 132 99.2
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 4.2e-67 258.1 132 95.5
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 7.2e-67 257.3 132 94.7
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 9.4e-67 256.9 132 94.7
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 9.4e-67 256.9 132 94.7
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 1.2e-66 256.5 132 94.7
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 1.6e-66 256.1 132 93.9
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 2.7e-66 255.4 132 93.9
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 2.7e-66 255.4 132 93.9
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 2.7e-66 255.4 132 93.9
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 2.7e-66 255.4 132 93.9
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 4.7e-66 254.6 132 93.2
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 4.7e-66 254.6 132 93.2
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 6.1e-66 254.2 132 93.2
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 6.1e-66 254.2 132 93.2
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 6.1e-66 254.2 132 92.4
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 1.4e-65 253.1 130 94.6
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 1.8e-65 252.7 132 91.7
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 3.0e-65 251.9 130 93.8
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 3.9e-65 251.5 132 90.9
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 3.9e-65 251.5 130 93.8
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 3.9e-65 251.5 130 93.8
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 3.9e-65 251.5 132 90.9
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 3.9e-65 251.5 132 90.9
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 5.2e-65 251.1 132 91.7
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 5.2e-65 251.1 134 91.8
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 5.2e-65 251.1 132 91.7
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 6.7e-65 250.8 130 93.8
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 6.7e-65 250.8 132 92.4
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 6.7e-65 250.8 132 90.9
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 6.7e-65 250.8 130 93.1
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 8.8e-65 250.4 132 90.9
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 8.8e-65 250.4 132 90.9
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 8.8e-65 250.4 130 93.1
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 8.8e-65 250.4 132 92.4
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 1.1e-64 250.0 130 93.1
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.1e-64 250.0 131 92.4
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 1.5e-64 249.6 132 90.9
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 1.5e-64 249.6 132 90.9
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 2.0e-64 249.2 131 90.8
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 2.0e-64 249.2 132 93.2
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 2.6e-64 248.8 132 93.2
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 3.3e-64 248.4 132 90.9
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 3.3e-64 248.4 133 91.7
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 4.4e-64 248.1 132 89.4
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 4.4e-64 248.1 132 92.4
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 4.4e-64 248.1 132 92.4
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 4.4e-64 248.1 130 91.5
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 4.4e-64 248.1 132 90.2
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 5.7e-64 247.7 131 89.3
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 5.7e-64 247.7 133 89.5
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 5.7e-64 247.7 133 89.5
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 5.7e-64 247.7 132 89.4
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 5.7e-64 247.7 132 90.9
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 7.4e-64 247.3 131 90.8
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 7.4e-64 247.3 130 91.5
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 7.4e-64 247.3 130 91.5
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 7.4e-64 247.3 130 91.5
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 7.4e-64 247.3 132 90.2
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 7.4e-64 247.3 132 90.2
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 9.7e-64 246.9 130 90.8
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 9.7e-64 246.9 132 90.9
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 9.7e-64 246.9 129 92.2
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 9.7e-64 246.9 129 92.2
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.3e-63 246.5 128 90.6
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 1.3e-63 246.5 142 83.1
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 1.3e-63 246.5 132 88.6
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 1.3e-63 246.5 132 90.2
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 1.7e-63 246.1 130 89.2
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 1.7e-63 246.1 130 90.8
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 1.7e-63 246.1 130 90.8
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.7e-63 246.1 132 90.9
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 1.7e-63 246.1 132 89.4
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 1.7e-63 246.1 130 90.8
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 2.2e-63 245.7 129 91.5
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 2.2e-63 245.7 132 89.4
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 2.2e-63 245.7 132 89.4
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 2.2e-63 245.7 140 86.4
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 2.2e-63 245.7 132 88.6
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 2.2e-63 245.7 132 88.6
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 2.2e-63 245.7 132 89.4
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 2.8e-63 245.4 126 92.9
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 2.8e-63 245.4 132 87.9
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 4.8e-63 244.6 132 88.6
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 4.8e-63 244.6 132 88.6
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 4.8e-63 244.6 132 88.6
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 4.8e-63 244.6 125 93.6
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 4.8e-63 244.6 128 92.2
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 4.8e-63 244.6 127 91.3
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 4.8e-63 244.6 132 87.1
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 4.8e-63 244.6 125 93.6
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 6.3e-63 244.2 130 90.0
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 6.3e-63 244.2 128 91.4
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 6.3e-63 244.2 132 88.6
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 8.2e-63 243.8 131 89.3
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 1.1e-62 243.4 130 90.0
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 1.1e-62 243.4 130 88.5
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 1.1e-62 243.4 132 88.6
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 1.1e-62 243.4 132 87.9
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 1.1e-62 243.4 134 88.1
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 1.4e-62 243.0 128 90.6
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 1.4e-62 243.0 128 90.6
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 1.4e-62 243.0 132 86.4
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.4e-62 243.0 132 86.4
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.4e-62 243.0 132 86.4
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.4e-62 243.0 132 86.4
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.4e-62 243.0 132 86.4
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.4e-62 243.0 132 86.4
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 1.4e-62 243.0 132 86.4
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.4e-62 243.0 130 89.2
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.4e-62 243.0 130 89.2
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 1.8e-62 242.7 135 85.9
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.8e-62 242.7 129 89.9
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.8e-62 242.7 129 89.9
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.1e-62 241.9 132 85.6
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 3.1e-62 241.9 132 87.1
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 4.1e-62 241.5 128 89.8
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 4.1e-62 241.5 128 89.8
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 4.1e-62 241.5 132 87.9
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 5.3e-62 241.1 128 89.8
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 7.0e-62 240.7 124 92.7
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 9.1e-62 240.4 128 89.1
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 1.2e-61 240.0 127 89.8
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 1.2e-61 240.0 128 89.8
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 2.0e-61 239.2 130 87.7
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 2.0e-61 239.2 130 87.7
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 3.5e-61 238.4 129 88.4
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 3.5e-61 238.4 134 87.3
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 7.7e-61 237.3 131 87.0
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 7.7e-61 237.3 130 87.7
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 2.9e-60 235.3 128 88.3
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 2.9e-60 235.3 128 88.3
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 2.9e-60 235.3 134 87.3
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 6.5e-60 234.2 136 84.6
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 4.2e-59 231.5 124 87.9
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 5.5e-59 231.1 125 88.8
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 2.0e-56 222.6 124 87.1
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 4.1e-54 214.9 132 81.1
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 9.1e-54 213.8 112 92.9
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 2.7e-53 212.2 188 60.6
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 3.8e-52 208.4 132 80.3
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 2.7e-50 202.2 125 78.4
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 6.8e-49 197.6 132 70.5
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 2.6e-48 195.7 124 70.2
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 2.6e-48 195.7 124 70.2
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 4.5e-45 184.9 116 75.0
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 5.2e-41 171.4 87 94.3
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 7.5e-40 167.5 96 83.3
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 7.5e-40 167.5 125 69.6
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 2.0e-37 159.5 83 91.6
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 2.7e-37 159.1 81 91.4
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 3.5e-37 158.7 83 92.8
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 2.5e-35 152.5 83 88.0
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 2.5e-35 152.5 86 81.4
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.2e-32 143.7 134 59.0
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 1.3e-31 140.2 95 78.9
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.7e-31 138.7 71 95.8
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.2e-30 135.6 71 94.4
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 5.4e-30 134.8 74 82.4
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 1.6e-29 133.3 71 93.0
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.8e-25 119.8 77 75.3
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 5.8e-24 114.8 61 90.2
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 3.5e-21 105.5 52 96.2
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 6.8e-17 91.3 46 93.5
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 1.6e-10 70.1 39 82.1


User provided reference genes

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