Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 7.8e-239 830.1 427 100.0
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 4.4e-149 531.9 426 66.2
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 7.4e-149 531.2 429 64.6
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 1.8e-147 526.6 424 64.4
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 2.6e-146 522.7 426 64.3
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 2.9e-145 519.2 418 64.4
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 6.5e-145 518.1 426 63.6
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 2.5e-144 516.2 426 62.4
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 9.4e-144 514.2 426 62.9
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 2.7e-143 512.7 426 62.4
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 2.7e-143 512.7 425 62.4
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.7e-143 512.7 423 63.4
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 4.7e-143 511.9 426 62.4
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 8.0e-143 511.1 424 63.0
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 8.0e-143 511.1 426 62.4
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 1.0e-142 510.8 426 62.4
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.4e-142 510.4 426 62.4
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 8.8e-142 507.7 427 61.8
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 1.2e-141 507.3 425 61.9
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 4.4e-141 505.4 426 62.7
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 4.4e-141 505.4 426 61.5
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 4.4e-141 505.4 425 60.9
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 5.7e-141 505.0 423 62.6
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 7.5e-141 504.6 426 61.5
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 1.3e-140 503.8 426 61.7
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.2e-140 503.1 426 61.3
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 2.8e-140 502.7 420 61.4
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 4.8e-140 501.9 425 61.6
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 8.2e-140 501.1 425 60.7
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.1e-139 500.7 427 61.4
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 1.1e-139 500.7 426 60.8
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 1.4e-139 500.4 425 62.4
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 1.8e-139 500.0 426 62.0
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 5.3e-139 498.4 434 60.8
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 5.3e-139 498.4 426 61.0
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 7.0e-139 498.0 420 61.4
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 7.0e-139 498.0 423 62.2
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 2.7e-138 496.1 426 62.0
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 2.7e-138 496.1 426 62.2
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 3.5e-138 495.7 426 60.1
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 5.9e-138 495.0 426 62.0
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 7.7e-138 494.6 426 60.8
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 1.0e-137 494.2 419 62.1
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 1.7e-137 493.4 426 61.7
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 2.2e-137 493.0 428 60.5
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 5.0e-137 491.9 426 60.3
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 5.0e-137 491.9 423 61.9
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 5.0e-137 491.9 426 60.3
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 5.0e-137 491.9 433 60.0
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 6.5e-137 491.5 426 60.6
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 6.5e-137 491.5 426 59.6
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 8.5e-137 491.1 423 61.5
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.1e-136 490.7 423 61.5
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 1.1e-136 490.7 423 61.0
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 1.5e-136 490.3 427 60.4
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 2.5e-136 489.6 426 60.8
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 3.2e-136 489.2 418 61.2
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 4.2e-136 488.8 427 60.2
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 4.2e-136 488.8 423 61.5
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 5.5e-136 488.4 426 60.3
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 7.2e-136 488.0 423 61.2
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 7.2e-136 488.0 427 59.5
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 3.6e-135 485.7 424 60.8
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 6.1e-135 485.0 422 59.2
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 1.8e-134 483.4 423 61.5
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 5.2e-134 481.9 404 60.4
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 2.6e-133 479.6 424 60.8
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 4.4e-133 478.8 426 58.9
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 9.8e-133 477.6 422 59.0
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 2.8e-132 476.1 424 60.8
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 4.1e-131 472.2 423 57.7
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 7.0e-131 471.5 426 58.9
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 3.5e-130 469.2 427 58.5
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 4.5e-130 468.8 426 59.9
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 7.7e-130 468.0 426 59.6
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 3.8e-129 465.7 423 60.3
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 5.0e-129 465.3 425 58.4
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 4.2e-128 462.2 465 55.5
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 5.5e-128 461.8 457 56.9
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 7.2e-128 461.5 427 57.1
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 7.2e-128 461.5 428 57.7
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 1.6e-127 460.3 434 58.1
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 1.6e-127 460.3 386 61.9
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 1.0e-126 457.6 420 56.0
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 2.3e-126 456.4 422 56.2
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 5.2e-126 455.3 457 56.9
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 6.8e-126 454.9 421 55.3
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 9.8e-125 451.1 427 59.0
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 2.8e-124 449.5 428 57.9
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 8.3e-124 448.0 426 57.5
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 1.1e-123 447.6 427 57.6
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 7.3e-120 434.9 426 55.2
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 1.2e-119 434.1 424 56.1
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 2.1e-119 433.3 420 56.4
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 1.0e-118 431.0 427 55.7
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 1.0e-118 431.0 427 55.7
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.8e-118 430.3 426 55.2
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 4.0e-118 429.1 428 56.1
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 1.2e-117 427.6 427 55.5
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 2.0e-117 426.8 428 55.8
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 2.0e-117 426.8 428 55.8
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 4.9e-116 422.2 432 55.1
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 8.3e-116 421.4 322 66.1
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 1.1e-115 421.0 362 59.9
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 2.4e-115 419.9 427 55.5
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 2.4e-115 419.9 427 55.5
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 2.4e-115 419.9 426 56.1
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 3.2e-115 419.5 427 55.5
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 3.2e-115 419.5 427 56.0
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 9.2e-115 417.9 427 55.3
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 1.6e-114 417.2 427 54.3
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 2.0e-114 416.8 423 55.8
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 2.7e-114 416.4 381 59.3
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 1.7e-113 413.7 427 54.6
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 1.7e-113 413.7 427 54.3
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 1.1e-112 411.0 427 54.1
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 1.5e-112 410.6 424 50.5
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 3.3e-112 409.5 449 53.0
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 7.3e-112 408.3 437 53.3
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 1.4e-110 404.1 385 58.2
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 3.1e-110 402.9 309 65.7
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 9.8e-109 397.9 427 52.5
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 1.3e-108 397.5 453 48.6
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 2.1e-106 390.2 427 49.6
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 1.0e-105 387.9 402 54.2
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 2.3e-105 386.7 423 49.4
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 8.6e-97 358.2 388 51.5
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 2.4e-94 350.1 431 46.2
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 2.8e-87 326.6 337 52.5
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 2.2e-84 317.0 291 56.0
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 4.2e-83 312.8 239 66.9
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 4.9e-76 289.3 240 63.3
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 6.0e-74 282.3 347 49.0
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.8e-73 280.8 432 43.3
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 4.8e-71 272.7 354 47.5
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 1.1e-62 245.0 433 35.8
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 4.3e-56 223.0 340 37.6
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.4e-54 218.0 212 55.2
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 1.0e-49 201.8 324 42.6
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 3.3e-48 196.8 192 55.7
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 5.9e-45 186.0 362 38.1
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 3.6e-42 176.8 187 55.1
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 1.3e-39 168.3 305 38.7
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 2.6e-37 160.6 187 52.4
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 7.7e-37 159.1 145 55.2
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 1.4e-30 138.3 313 28.8
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 2.6e-29 134.0 252 38.9
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.7e-23 114.8 119 51.3
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 9.1e-22 109.0 212 36.8
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 1.8e-17 94.7 89 58.4
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 5.2e-17 93.2 125 41.6
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 1.2e-16 92.0 76 57.9
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 1.2e-16 92.0 76 57.9
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 1.5e-16 91.7 77 61.0
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 7.5e-08 62.8 49 65.3
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 4.9e-07 60.1 53 66.0
Nn4g22394 Nelumbo nucifera HOM05D004649 ORTHO05D005446 4.9e-07 60.1 42 66.7
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.4e-06 58.5 59 52.5
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.4e-06 57.8 48 58.3
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 2.4e-06 57.8 65 49.2
FvH4_6g52500 Fragaria vesca HOM05D004649 ORTHO05D005446 7.0e-06 56.2 48 58.3


User provided reference genes

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