Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 0.0e+00 1470.7 782 100.0
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 3.5e-237 825.5 796 60.7
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.9e-231 805.8 800 60.8
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.3e-223 780.4 779 59.2
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 5.4e-214 748.4 795 56.7
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 8.1e-210 734.6 795 57.6
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.6e-194 683.7 788 54.6
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.3e-163 579.7 689 54.3
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 3.3e-163 579.7 695 53.4
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 1.3e-162 577.8 704 54.1
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 2.2e-159 567.0 695 52.7
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.9e-158 563.9 694 52.9
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 3.2e-158 563.1 697 51.8
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 1.2e-157 561.2 669 54.9
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 2.7e-157 560.1 696 52.3
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 3.6e-157 559.7 654 52.8
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 8.0e-157 558.5 691 50.7
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 1.4e-156 557.8 680 52.4
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.3e-156 557.0 694 52.9
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 3.0e-156 556.6 691 50.5
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 3.4e-155 553.1 656 52.7
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 7.5e-155 552.0 691 49.9
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.3e-154 551.2 696 53.0
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 9.1e-153 545.0 693 49.9
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 2.0e-152 543.9 688 50.1
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 2.7e-152 543.5 701 50.8
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.7e-151 540.8 654 51.7
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.7e-151 540.8 654 51.7
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.5e-151 538.9 654 51.7
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 6.5e-151 538.9 693 49.4
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 8.5e-151 538.5 697 50.1
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 5.5e-150 535.8 696 49.4
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 2.7e-149 533.5 747 48.3
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 2.3e-148 530.4 698 51.1
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 5.2e-148 529.3 695 51.1
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 1.2e-147 528.1 694 50.7
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 5.7e-147 525.8 697 49.4
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 4.8e-146 522.7 676 50.7
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 6.3e-146 522.3 675 51.6
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 8.3e-146 521.9 700 50.0
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.1e-145 521.5 675 50.5
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.1e-145 521.5 675 50.5
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 7.7e-144 515.4 694 50.1
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.7e-143 514.2 676 50.3
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 2.3e-143 513.8 668 50.7
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 7.2e-142 508.8 696 48.6
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 6.1e-141 505.8 686 48.8
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 8.0e-141 505.4 687 49.8
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 1.8e-140 504.2 677 50.7
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 4.0e-140 503.1 678 48.8
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 5.2e-140 502.7 677 49.8
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 8.9e-140 501.9 697 48.6
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 2.8e-138 496.9 685 49.3
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.5e-136 490.0 689 49.2
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 3.5e-136 490.0 678 48.1
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 5.9e-136 489.2 645 48.7
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 1.0e-135 488.4 696 46.7
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.7e-135 487.6 669 46.6
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 1.5e-134 484.6 695 46.6
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.3e-134 483.0 658 47.0
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 6.1e-133 479.2 696 48.4
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 8.0e-133 478.8 695 47.8
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.1e-132 476.9 653 46.1
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.2e-132 476.1 655 46.0
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 8.9e-132 475.3 680 49.6
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.5e-131 474.6 600 49.8
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 4.4e-131 473.0 655 45.8
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 9.8e-131 471.9 622 50.2
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.3e-130 471.5 657 46.4
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.3e-130 471.5 688 45.9
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 1.2e-128 464.9 685 48.2
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 2.7e-128 463.8 694 45.8
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 3.5e-128 463.4 629 48.8
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 5.6e-126 456.1 688 46.1
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 5.6e-126 456.1 692 47.5
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 1.6e-125 454.5 677 45.8
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 2.1e-125 454.1 691 46.9
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 6.2e-125 452.6 716 43.4
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 4.0e-124 449.9 695 46.5
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 5.8e-123 446.0 693 45.7
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 7.5e-123 445.7 696 45.3
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 3.7e-122 443.4 669 46.9
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 3.7e-122 443.4 703 43.5
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.4e-121 440.7 689 46.0
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 7.1e-121 439.1 687 46.1
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 1.6e-120 438.0 765 41.6
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 2.3e-119 434.1 668 45.2
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 2.3e-119 434.1 664 46.8
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 5.1e-119 433.0 654 45.3
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 1.1e-118 431.8 695 45.3
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 9.5e-118 428.7 655 44.7
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 2.8e-117 427.2 674 43.6
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 8.1e-117 425.6 689 44.7
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 2.3e-116 424.1 687 43.7
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 5.2e-116 422.9 651 44.5
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.2e-115 421.8 646 44.6
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.5e-115 421.4 569 49.2
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 5.8e-115 419.5 802 40.0
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.2e-113 412.1 650 44.6
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 2.7e-112 410.6 682 44.1
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 7.8e-112 409.1 567 45.0
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.9e-111 406.8 662 45.9
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.6e-109 401.4 682 43.0
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.8e-109 400.6 457 56.2
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 6.2e-109 399.4 693 42.7
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 4.0e-108 396.7 654 42.7
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 8.9e-108 395.6 551 44.5
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 2.9e-106 390.6 674 44.2
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 6.4e-106 389.4 693 43.4
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 1.9e-105 387.9 663 43.1
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 2.4e-105 387.5 660 43.3
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 5.4e-105 386.3 563 44.2
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 9.3e-105 385.6 662 41.4
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 2.7e-104 384.0 656 44.1
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 3.5e-104 383.6 696 42.4
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.7e-103 381.3 683 43.3
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.7e-103 381.3 689 42.2
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 1.1e-100 372.1 685 44.2
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 1.2e-99 368.6 684 44.2
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.5e-99 368.2 685 41.6
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 4.9e-98 363.2 847 35.8
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 2.4e-97 360.9 689 41.5
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 4.6e-96 356.7 683 40.6
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.3e-95 355.1 511 47.6
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 3.0e-95 354.0 539 44.0
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 3.0e-95 354.0 556 44.4
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 3.0e-95 354.0 556 44.4
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 1.3e-93 348.6 559 42.8
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 2.1e-93 347.8 562 42.7
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 2.8e-93 347.4 663 42.4
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 2.8e-93 347.4 663 42.4
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 6.2e-93 346.3 562 42.5
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.4e-92 345.1 649 41.4
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.8e-92 344.7 697 40.5
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 9.0e-92 342.4 649 41.3
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 9.9e-91 339.0 680 39.7
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.9e-90 337.4 458 47.4
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 1.9e-89 334.7 622 39.9
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 7.1e-89 332.8 494 44.7
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.9e-86 324.7 689 39.8
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 3.4e-83 313.9 677 39.6
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 4.6e-80 303.5 456 47.8
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 5.1e-79 300.1 820 34.0
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 8.2e-77 292.7 635 39.4
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 5.0e-74 283.5 631 38.4
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 9.3e-73 279.3 682 36.2
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 1.6e-72 278.5 614 36.8
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.5e-72 277.3 422 45.0
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 5.7e-70 270.0 547 39.3
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.9e-66 257.7 797 33.6
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 3.6e-64 250.8 763 33.3
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 1.1e-60 239.2 294 50.0
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.1e-60 237.7 339 46.9
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 8.5e-58 229.6 558 31.9
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 7.9e-56 223.0 407 37.6
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 3.0e-55 221.1 196 64.8
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 7.0e-52 209.9 638 31.5
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 2.0e-51 208.4 275 50.5
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 4.2e-49 200.7 412 41.3
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 1.7e-45 188.7 231 51.1
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 4.1e-36 157.5 307 41.4
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 1.8e-31 142.1 122 59.8
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 4.9e-29 134.0 371 31.8
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 4.1e-20 104.4 175 41.1
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 5.4e-20 104.0 120 47.5
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 5.6e-17 94.0 172 35.5
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.2e-15 87.4 120 45.8
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 4.4e-14 84.3 69 56.5
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.4e-12 79.3 60 63.3
TAR371G1136 Trochodendron aralioides HOM05D030477 ORTHO05D004065 1.7e-10 72.4 39 89.7
HPP92_000305 Vanilla planifolia HOM05D000527 ORTHO05D000559 2.1e-08 65.5 57 57.9
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 8.1e-08 63.5 79 64.6
MCO04G343 Micromonas commoda HOM05D003655 ORTHO05D004065 4.0e-07 61.2 66 40.9


User provided reference genes

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