Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 1.3e-213 746.1 381 100.0
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 9.6e-132 474.2 390 65.1
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 9.6e-132 474.2 390 65.1
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 1.0e-128 464.2 384 67.2
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 3.0e-125 452.6 385 65.2
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 9.7e-124 447.6 326 69.9
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 1.7e-120 436.8 376 62.8
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 5.0e-120 435.3 382 62.0
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 4.2e-119 432.2 384 62.0
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 5.5e-119 431.8 372 62.4
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 7.2e-119 431.4 389 62.7
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 9.4e-119 431.0 288 74.3
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 9.4e-119 431.0 280 76.4
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 1.2e-118 430.6 379 62.3
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 1.6e-118 430.3 280 76.4
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 6.1e-118 428.3 386 61.9
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 6.1e-118 428.3 383 62.1
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 7.9e-118 427.9 383 62.4
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 1.4e-117 427.2 390 60.8
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 1.8e-117 426.8 390 59.7
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 1.8e-117 426.8 381 62.2
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 2.3e-117 426.4 384 59.9
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 5.1e-117 425.2 286 74.1
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 6.7e-117 424.9 292 72.3
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 8.8e-117 424.5 376 62.8
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 1.5e-116 423.7 283 74.9
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 1.7e-115 420.2 383 61.6
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 4.8e-115 418.7 291 71.1
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 4.8e-115 418.7 293 72.0
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 1.4e-114 417.2 381 61.4
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 2.4e-114 416.4 381 59.6
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 6.9e-114 414.8 383 61.9
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 6.9e-114 414.8 282 73.0
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 9.1e-114 414.5 381 60.1
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.2e-113 414.1 266 75.6
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 1.2e-113 414.1 265 77.0
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 1.5e-113 413.7 282 72.7
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 2.6e-113 412.9 397 58.7
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 4.5e-113 412.1 261 77.0
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 4.5e-113 412.1 373 58.7
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 1.0e-112 411.0 356 64.3
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 1.3e-112 410.6 373 60.1
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 8.5e-112 407.9 383 60.1
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 1.9e-111 406.8 281 72.2
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 7.2e-111 404.8 385 58.4
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 9.4e-111 404.4 275 72.7
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 1.6e-110 403.7 394 57.4
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 7.9e-110 401.4 252 77.4
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 1.0e-109 401.0 289 69.9
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 6.7e-109 398.3 378 56.9
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 3.3e-108 396.0 376 59.0
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 4.4e-108 395.6 296 71.6
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 5.7e-108 395.2 372 55.9
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 7.4e-108 394.8 386 58.0
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 7.4e-108 394.8 385 58.7
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 9.7e-108 394.4 318 63.8
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 1.3e-107 394.0 295 66.8
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 2.8e-107 392.9 372 58.1
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 1.8e-106 390.2 374 56.1
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 3.1e-106 389.4 280 70.0
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 3.1e-106 389.4 283 70.7
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 9.1e-106 387.9 374 58.3
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 4.5e-105 385.6 375 56.3
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 1.7e-104 383.6 284 67.6
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 2.2e-104 383.3 275 69.8
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 1.1e-103 380.9 287 67.2
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 1.9e-103 380.2 277 69.0
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 3.2e-103 379.4 325 62.5
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 3.2e-103 379.4 447 49.9
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 5.5e-103 378.6 372 56.2
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 9.4e-103 377.9 273 69.2
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 2.1e-102 376.7 372 55.9
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 2.7e-102 376.3 372 55.6
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 2.7e-102 376.3 372 55.6
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 2.7e-102 376.3 273 68.9
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 2.7e-102 376.3 306 63.1
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 1.4e-101 374.0 380 56.8
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 1.4e-101 374.0 282 68.1
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 1.5e-100 370.5 294 63.9
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 4.4e-100 369.0 381 54.6
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 4.4e-100 369.0 282 67.0
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 4.8e-99 365.5 307 63.5
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 4.5e-97 359.0 274 66.4
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 5.9e-97 358.6 327 59.3
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 5.0e-96 355.5 282 66.3
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 4.2e-95 352.4 285 62.5
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 7.2e-95 351.7 278 64.4
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 1.2e-84 317.8 381 53.5
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 4.8e-83 312.4 368 48.4
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 4.1e-82 309.3 265 60.8
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 4.0e-77 292.7 234 60.7
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 5.2e-77 292.4 310 48.1
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 4.1e-74 282.7 237 56.5
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 2.0e-73 280.4 282 57.1
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 3.5e-73 279.6 282 57.1
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 1.3e-72 277.7 281 57.7
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 2.8e-70 270.0 282 53.2
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 3.6e-70 269.6 291 51.5
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 4.4e-68 262.7 380 46.3
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 4.9e-67 259.2 236 50.8
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 4.4e-60 236.1 227 51.5
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 4.4e-60 236.1 238 47.9
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 1.4e-58 231.1 268 52.2
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.6e-54 217.6 183 61.2
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 4.4e-52 209.5 114 84.2
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 3.6e-46 189.9 167 59.3
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 3.6e-46 189.9 232 42.2
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 1.1e-45 188.3 223 41.3
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 6.8e-45 185.7 264 34.5
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 6.4e-43 179.1 120 74.2
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 5.1e-40 169.5 219 42.0
MD07G1179900 Malus domestica HOM05D006539 ORTHO05D008694 8.7e-32 142.1 223 45.7
MD11G1144500 Malus domestica HOM05D006539 ORTHO05D008694 3.1e-29 133.7 243 42.0
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 2.6e-28 130.6 137 56.2
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 3.8e-27 126.7 147 52.4
HPP92_013416 Vanilla planifolia HOM05D006539 ORTHO05D008694 6.0e-25 119.4 105 58.1
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 1.0e-24 118.6 75 78.7
QL02p073354 Quercus lobata HOM05D006539 ORTHO05D008694 5.1e-24 116.3 128 56.2
QL02p073352 Quercus lobata HOM05D006539 ORTHO05D008694 1.8e-16 91.3 67 70.1
Cre09.g392950 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D044332 8.7e-16 89.0 202 30.2
MD07G1180000 Malus domestica HOM05D006539 ORTHO05D248072 1.8e-13 81.3 105 44.8
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 1.3e-08 65.1 143 30.1
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 5.1e-08 63.2 152 29.6
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 6.7e-08 62.8 142 31.7
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 1.1e-07 62.0 148 29.7
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 1.9e-07 61.2 179 26.8
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 1.9e-07 61.2 150 28.0
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 2.5e-07 60.8 141 29.1
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 2.5e-07 60.8 141 29.1
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 3.3e-07 60.5 141 29.1
MCO05G154 Micromonas commoda HOM05D006539 ORTHO05D044332 3.3e-07 60.5 218 25.2
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 4.3e-07 60.1 141 29.1
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 5.7e-07 59.7 188 29.3
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 1.3e-06 58.5 198 24.7
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 1.6e-06 58.2 141 29.1
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 3.7e-06 57.0 145 29.0
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 4.8e-06 56.6 142 26.1
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 6.3e-06 56.2 166 26.5
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 8.2e-06 55.8 201 25.4
Ciclev10025907m.g Citrus clementina HOM05D007191 ORTHO05D009370 8.2e-06 55.8 148 27.7


User provided reference genes

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