Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 8.6e-197 691.0 655 100.0
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 4.7e-86 323.2 424 55.0
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 4.4e-84 316.6 422 55.9
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 7.5e-84 315.8 633 67.6
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 3.7e-83 313.5 422 70.9
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 5.4e-82 309.7 624 58.8
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 1.6e-81 308.1 422 44.8
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 1.7e-80 304.7 424 67.5
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 6.6e-80 302.8 424 67.0
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 9.5e-79 298.9 423 52.5
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 4.0e-77 293.5 422 67.5
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 1.2e-76 292.0 422 67.8
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 2.9e-75 287.3 422 62.6
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 4.6e-73 280.0 453 59.6
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 1.7e-72 278.1 626 56.1
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 3.9e-72 276.9 424 68.2
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 5.6e-71 273.1 383 57.4
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 5.6e-71 273.1 385 63.1
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 1.4e-69 268.5 251 72.1
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 5.2e-69 266.5 251 74.5
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 9.9e-68 262.3 424 61.8
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 6.4e-67 259.6 621 55.9
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 2.4e-66 257.7 251 71.3
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 2.4e-66 257.7 251 71.3
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 3.2e-66 257.3 453 57.2
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 5.4e-66 256.5 422 64.7
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 5.4e-66 256.5 423 49.2
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 1.6e-65 255.0 432 62.7
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 1.3e-64 251.9 251 71.7
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 1.9e-63 248.1 251 73.3
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 7.3e-63 246.1 422 63.5
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 9.6e-63 245.7 252 68.7
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 1.6e-62 245.0 286 61.5
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 8.1e-62 242.7 422 63.0
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 1.4e-61 241.9 410 64.4
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 3.1e-61 240.7 424 45.8
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 1.2e-60 238.8 394 67.8
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 1.2e-60 238.8 409 49.6
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 1.2e-60 238.8 422 56.4
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 2.6e-60 237.7 392 57.7
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 3.4e-60 237.3 360 55.0
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 1.7e-59 235.0 422 61.6
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 1.7e-59 235.0 422 61.8
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 1.7e-59 235.0 249 66.7
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 3.2e-58 230.7 422 62.6
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 1.2e-57 228.8 360 50.3
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.2e-57 228.8 360 50.3
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.8e-56 224.9 251 65.3
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.8e-56 224.9 251 65.3
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 5.1e-56 223.4 252 64.7
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 8.7e-56 222.6 251 64.9
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 5.6e-55 219.9 251 64.1
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 9.6e-55 219.2 571 39.6
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 2.1e-54 218.0 252 63.9
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 2.8e-54 217.6 386 62.2
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 8.1e-54 216.1 252 63.5
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 1.8e-53 214.9 250 68.8
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 3.1e-53 214.2 250 68.0
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 6.9e-53 213.0 251 62.9
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 9.0e-53 212.6 358 53.4
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 1.5e-52 211.8 250 66.4
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 1.5e-52 211.8 250 67.6
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 2.0e-52 211.5 421 51.1
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 2.6e-52 211.1 250 67.2
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 2.6e-52 211.1 252 62.3
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 4.5e-52 210.3 251 63.7
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 5.8e-52 209.9 250 68.0
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 1.3e-51 208.8 250 67.6
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 1.3e-51 208.8 250 67.6
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 4.9e-51 206.8 250 66.4
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 8.4e-51 206.1 414 59.7
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 1.4e-50 205.3 250 62.8
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 1.9e-50 204.9 250 64.8
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 1.9e-50 204.9 250 65.2
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 1.9e-50 204.9 251 60.6
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 3.2e-50 204.1 250 67.2
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 7.9e-49 199.5 251 60.2
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 1.0e-48 199.1 421 56.3
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 5.1e-48 196.8 237 62.0
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 8.7e-48 196.1 249 60.6
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 7.4e-47 193.0 409 55.0
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 7.4e-47 193.0 245 61.2
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 4.8e-46 190.3 422 57.6
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 1.4e-45 188.7 140 66.4
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 4.6e-41 173.7 250 58.8
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 6.0e-41 173.3 208 68.3
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 1.8e-40 171.8 212 67.5
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 3.0e-40 171.0 212 68.4
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 2.8e-38 164.5 222 61.3
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 3.1e-37 161.0 413 31.7
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 9.0e-37 159.5 227 61.2
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 1.2e-36 159.1 252 57.5
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 4.5e-36 157.1 129 61.2
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 1.7e-35 155.2 212 61.8
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 3.8e-35 154.1 217 63.1
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 6.5e-35 153.3 326 58.0
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 2.5e-34 151.4 409 30.6
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 3.2e-34 151.0 328 52.4
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 5.5e-34 150.2 327 56.6
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 7.4e-31 139.8 249 57.0
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 2.4e-29 134.8 205 39.5
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.4e-29 134.8 223 65.5
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 1.1e-26 125.9 218 53.2
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 7.9e-25 119.8 113 57.5
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 8.2e-22 109.8 317 47.6
Lj5P156T63 Lonicera japonica HOM05D006707 ORTHO05D008243 1.8e-21 108.6 72 70.8
BraA05t22010Z Brassica rapa HOM05D006707 ORTHO05D008243 1.0e-19 102.8 227 31.7
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 2.7e-17 94.7 217 31.3
RhsimUnG0220500 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.3e-14 85.9 53 69.8
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 5.9e-12 77.0 101 45.5
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 1.0e-11 76.3 49 63.3
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 1.3e-11 75.9 45 68.9
Gohir.D12G110200 Gossypium hirsutum HOM05D003900 ORTHO05D005009 5.5e-10 70.5 91 42.9
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 1.6e-09 68.9 50 62.0
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 1.6e-09 68.9 50 62.0
Gorai.008G119500 Gossypium raimondii HOM05D003900 ORTHO05D005009 1.6e-09 68.9 91 42.9
CSS0000093 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 2.7e-09 68.2 91 40.7
CSS0016355 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 2.7e-09 68.2 91 40.7
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 3.6e-09 67.8 159 52.2
Rhsim07G0010500 Rhododendron simsii HOM05D003900 ORTHO05D005009 6.1e-09 67.0 94 41.5
Gohir.A12G106900 Gossypium hirsutum HOM05D003900 ORTHO05D005009 1.8e-08 65.5 91 40.7
Prupe.2G177500 Prunus persica HOM05D003900 ORTHO05D005009 3.0e-08 64.7 95 38.9
MELO3C017354.2 Cucumis melo HOM05D006707 ORTHO05D008243 4.0e-08 64.3 40 70.0
GSVIVG01026966001 Vitis vinifera HOM05D003900 ORTHO05D005009 4.0e-08 64.3 95 40.0
MBI11_g19575_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 5.2e-08 63.9 94 42.6
MD01G1071400 Malus domestica HOM05D003900 ORTHO05D005009 1.2e-07 62.8 94 38.3
HanXRQChr04g0120801 Helianthus annuus HOM05D003900 ORTHO05D005009 1.5e-07 62.4 93 35.5
BcaC08g45129 Brassica carinata HOM05D003900 ORTHO05D005009 2.0e-07 62.0 91 38.5
BcaB02g07375 Brassica carinata HOM05D003900 ORTHO05D005009 2.6e-07 61.6 90 41.1
ECA236G1505 Erigeron canadensis HOM05D003900 ORTHO05D005009 4.4e-07 60.8 94 36.2
Haze_15564 Corylus avellana HOM05D003900 ORTHO05D005009 7.5e-07 60.1 99 36.4
QL10p028425 Quercus lobata HOM05D006707 ORTHO05D008243 7.5e-07 60.1 43 74.4
C06p27530 Brassica napus HOM05D003900 ORTHO05D005009 9.7e-07 59.7 91 38.5
BolC6t37920H Brassica oleracea HOM05D003900 ORTHO05D005009 9.7e-07 59.7 91 38.5
vmacro13229 Vaccinium macrocarpon HOM05D003900 ORTHO05D005009 9.7e-07 59.7 91 38.5
BraA07t30195Z Brassica rapa HOM05D003900 ORTHO05D005009 2.2e-06 58.5 91 39.6
CiPaw.01G066800 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.2e-06 58.5 97 38.1
Cpa.g.sc13.131 Carica papaya HOM05D007402 ORTHO05D003673 2.8e-06 58.2 95 29.5
Thhalv10011454m.g Eutrema salsugineum HOM05D002453 ORTHO05D008746 2.8e-06 58.2 100 35.0
Manes.06G007451 Manihot esculenta HOM05D006707 ORTHO05D008243 2.8e-06 58.2 40 65.0
Lsat_1_v5_gn_7_2720 Lactuca sativa HOM05D003900 ORTHO05D005009 3.7e-06 57.8 93 33.3
A07p25540 Brassica napus HOM05D003900 ORTHO05D005009 6.3e-06 57.0 91 37.4
Duzib138G1643 Durio zibethinus HOM05D003900 ORTHO05D005009 6.3e-06 57.0 94 33.0
Duzib205G0762 Durio zibethinus HOM05D007145 ORTHO05D008952 6.3e-06 57.0 95 33.7
Sabra14G0065500 Salix brachista HOM05D003900 ORTHO05D005009 6.3e-06 57.0 95 34.7
Thecc.01G352500 Theobroma cacao HOM05D003900 ORTHO05D005009 6.3e-06 57.0 94 36.2
Duzib133G1046 Durio zibethinus HOM05D003900 ORTHO05D005009 8.2e-06 56.6 94 31.9
Gohir.A09G172800 Gossypium hirsutum HOM05D007145 ORTHO05D008952 8.2e-06 56.6 95 33.7
Gohir.D09G168500 Gossypium hirsutum HOM05D007145 ORTHO05D008952 8.2e-06 56.6 95 33.7
Gorai.006G190100 Gossypium raimondii HOM05D007145 ORTHO05D008952 8.2e-06 56.6 95 33.7


User provided reference genes

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