Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G04041 Aquilegia oxysepala HOM05D006825 ORTHO05D008510 9.2e-234 813.1 401 100.0
PSO541G4668 Papaver somniferum HOM05D006825 ORTHO05D008510 6.3e-166 587.8 411 71.3
Nn3g20374 Nelumbo nucifera HOM05D006825 ORTHO05D008510 8.2e-166 587.4 407 72.0
PSO675G9026 Papaver somniferum HOM05D006825 ORTHO05D008510 3.7e-158 562.0 462 63.0
Ciclev10025798m.g Citrus clementina HOM05D006825 ORTHO05D008510 1.1e-157 560.5 398 68.3
CSS0032071 Camellia sinensis var. sinensis HOM05D006825 ORTHO05D008510 2.0e-156 556.2 404 68.6
CSS0030622 Camellia sinensis var. sinensis HOM05D006825 ORTHO05D008510 3.5e-156 555.4 404 68.3
QL06p050789 Quercus lobata HOM05D006825 ORTHO05D008510 3.5e-156 555.4 401 68.1
Cfa006985 Carpinus fangiana HOM05D000348 ORTHO05D000244 5.9e-156 554.7 393 68.4
Glyma.02G047100 Glycine max HOM05D006825 ORTHO05D008510 2.9e-155 552.4 401 67.6
Potri.007G056800 Populus trichocarpa HOM05D006825 ORTHO05D008510 3.8e-155 552.0 400 67.2
Nitab4.5_0004340g0050 Nicotiana tabacum HOM05D006825 ORTHO05D008510 5.0e-155 551.6 408 67.9
Dinv33645 Davidia involucrata HOM05D006825 ORTHO05D008510 4.2e-154 548.5 406 68.5
Gohir.A02G171400 Gossypium hirsutum HOM05D006825 ORTHO05D008510 4.7e-153 545.0 408 67.4
Rhsim10G0211100 Rhododendron simsii HOM05D006825 ORTHO05D008510 4.7e-153 545.0 399 66.9
Lj4A220T100 Lonicera japonica HOM05D006825 ORTHO05D008510 6.1e-153 544.7 402 67.2
MBI02_g07022_MAGBIO Magnolia biondii HOM05D006825 ORTHO05D008510 6.1e-153 544.7 414 67.4
Peaxi162Scf00635g00623 Petunia axillaris HOM05D006825 ORTHO05D008510 1.4e-152 543.5 400 68.0
Thecc.01G016500 Theobroma cacao HOM05D006825 ORTHO05D008510 1.4e-152 543.5 402 66.9
CiPaw.08G130700 Carya illinoinensis HOM05D006825 ORTHO05D008510 1.8e-152 543.1 399 66.9
Lj4g0003754 Lotus japonicus HOM05D006825 ORTHO05D008510 8.8e-152 540.8 396 67.4
PGSC0003DMG400022529 Solanum tuberosum HOM05D006825 ORTHO05D008510 1.5e-151 540.0 409 67.2
Gorai.003G008900 Gossypium raimondii HOM05D006825 ORTHO05D008510 2.6e-151 539.3 408 66.7
vmacro22141 Vaccinium macrocarpon HOM05D006825 ORTHO05D008510 4.4e-151 538.5 406 65.5
CAN.G1817.4 Capsicum annuum HOM05D006825 ORTHO05D008510 5.7e-151 538.1 409 67.0
MD02G1129700 Malus domestica HOM05D006825 ORTHO05D008510 5.7e-151 538.1 399 66.4
Sabra07G0048700 Salix brachista HOM05D006825 ORTHO05D008510 9.8e-151 537.3 400 65.5
FvH4_1g11660 Fragaria vesca HOM05D006825 ORTHO05D008510 1.3e-150 537.0 402 66.9
Gohir.D03G008700 Gossypium hirsutum HOM05D006825 ORTHO05D008510 4.8e-150 535.0 408 66.4
Cc07_g10910 Coffea canephora HOM05D006825 ORTHO05D008510 6.3e-150 534.6 397 67.5
arahy.Tifrunner.gnm1.ann1.JPTZ14 Arachis hypogaea HOM05D006825 ORTHO05D008510 1.8e-149 533.1 399 66.2
Ca_22387_v3 Cicer arietinum L. HOM05D006825 ORTHO05D008510 1.8e-149 533.1 398 65.8
Duzib147G0784 Durio zibethinus HOM05D006825 ORTHO05D008510 1.8e-149 533.1 400 66.2
FAN19G1602 Fragaria x ananassa HOM05D006825 ORTHO05D008510 3.1e-149 532.3 402 66.4
Cpa.g.sc6.269 Carica papaya HOM05D006825 ORTHO05D008510 4.1e-149 531.9 393 67.9
Medtr8g075430 Medicago truncatula HOM05D006825 ORTHO05D008510 7.0e-149 531.2 394 66.2
VMungo0251G0870 Vigna mungo HOM05D006825 ORTHO05D008510 7.0e-149 531.2 401 66.6
DCAR_021509 Daucus carota HOM05D006825 ORTHO05D008510 9.1e-149 530.8 431 62.4
Oeu053236.1 Olea europaea HOM05D006825 ORTHO05D008510 1.2e-148 530.4 398 65.8
MSTRG.14307 Avicennia marina HOM05D006825 ORTHO05D008510 7.7e-148 527.7 400 66.5
Lsat_1_v5_gn_4_145960 Lactuca sativa HOM05D006825 ORTHO05D008510 1.0e-147 527.3 401 65.3
Eucgr.I02337 Eucalyptus grandis HOM05D006825 ORTHO05D008510 1.3e-147 526.9 398 65.6
PGR119G0791 Punica granatum HOM05D006825 ORTHO05D008510 2.2e-147 526.2 404 64.1
Prupe.7G169900 Prunus persica HOM05D006825 ORTHO05D008510 6.5e-147 524.6 397 65.2
EL10Ac6g15487 Beta vulgaris HOM05D006825 ORTHO05D008510 1.9e-146 523.1 396 64.6
RcHm_v2.0_Chr2g0099251 Rosa chinensis HOM05D006825 ORTHO05D008510 4.2e-146 521.9 403 65.3
AUR62029480 Chenopodium quinoa HOM05D006825 ORTHO05D008510 7.2e-146 521.2 398 65.1
GSVIVG01018762001 Vitis vinifera HOM05D006825 ORTHO05D008510 9.4e-146 520.8 397 66.5
MD15G1244000 Malus domestica HOM05D006825 ORTHO05D008510 1.2e-145 520.4 401 65.3
THA.LOC104821331 Tarenaya hassleriana HOM05D006825 ORTHO05D008510 2.1e-145 519.6 393 66.4
Hund14052 Selenicereus undatus HOM05D006825 ORTHO05D008510 3.6e-145 518.8 402 64.4
FAN28G2055 Fragaria x ananassa HOM05D006825 ORTHO05D008510 8.0e-145 517.7 448 59.6
HanXRQChr09g0256941 Helianthus annuus HOM05D006825 ORTHO05D008510 1.4e-144 516.9 401 64.3
TWI09G1238 Tripterygium wilfordii HOM05D006825 ORTHO05D008510 4.0e-144 515.4 414 62.8
CANSAT25G1468 Cannabis sativa HOM05D006825 ORTHO05D008510 6.8e-144 514.6 392 64.5
MELO3C007916.2 Cucumis melo HOM05D006825 ORTHO05D008510 6.8e-144 514.6 416 62.5
arahy.Tifrunner.gnm1.ann1.89Z5DT Arachis hypogaea HOM05D006825 ORTHO05D008510 2.0e-143 513.1 398 63.8
Lsat_1_v5_gn_4_145901 Lactuca sativa HOM05D006825 ORTHO05D008510 5.7e-143 511.5 401 63.8
Migut.H02145 Erythranthe guttata HOM05D006825 ORTHO05D008510 7.5e-143 511.1 406 65.0
ATR1098G103 Amborella trichopoda HOM05D006825 ORTHO05D008510 4.1e-141 505.4 408 63.0
Thhalv10004380m.g Eutrema salsugineum HOM05D006825 ORTHO05D008510 4.1e-141 505.4 394 65.0
Sp2g30510 Schrenkiella parvula HOM05D006825 ORTHO05D008510 4.5e-140 501.9 396 64.9
A02p44590 Brassica napus HOM05D006825 ORTHO05D008510 1.7e-139 500.0 392 64.5
BraA02t09375Z Brassica rapa HOM05D006825 ORTHO05D008510 1.7e-139 500.0 392 64.5
BolC2t12557H Brassica oleracea HOM05D006825 ORTHO05D008510 1.1e-138 497.3 394 63.2
AT5G66180 Arabidopsis thaliana HOM05D006825 ORTHO05D008510 1.5e-138 496.9 392 64.0
Carub.0008s2832 Capsella rubella HOM05D006825 ORTHO05D008510 1.5e-138 496.9 393 63.9
Aa31LG1G14680 Aethionema arabicum HOM05D006825 ORTHO05D008510 4.3e-138 495.4 395 62.3
CsaV3_6G047250 Cucumis sativus L. HOM05D006825 ORTHO05D008510 4.3e-138 495.4 402 62.2
FAN26G0347 Fragaria x ananassa HOM05D006825 ORTHO05D008510 7.3e-138 494.6 409 61.6
AUR62003356 Chenopodium quinoa HOM05D006825 ORTHO05D008510 2.8e-137 492.7 383 63.4
CDE01G0266 Ceratophyllum demersum HOM05D006825 ORTHO05D008510 1.0e-136 490.7 397 63.2
unitig_744.g24494 Utricularia gibba HOM05D000120 ORTHO05D008510 5.7e-135 485.0 391 62.9
HPP92_013273 Vanilla planifolia HOM05D006825 ORTHO05D008510 1.1e-133 480.7 382 65.4
AL8G45350 Arabidopsis lyrata HOM05D006825 ORTHO05D008510 4.1e-133 478.8 392 62.0
SGA_v2.0_scaffold80G25916 Striga asiatica HOM05D006825 ORTHO05D008510 3.5e-132 475.7 402 63.9
Haze_03748 Corylus avellana HOM05D006825 ORTHO05D008510 1.7e-131 473.4 359 65.5
Nitab4.5_0000438g0130 Nicotiana tabacum HOM05D006825 ORTHO05D008510 2.3e-131 473.0 360 65.6
TAR626G0952 Trochodendron aralioides HOM05D006825 ORTHO05D008510 2.5e-130 469.5 332 69.0
Solyc03g033450.4 Solanum lycopersicum HOM05D006825 ORTHO05D008510 1.6e-129 466.8 361 65.4
BcaC03g18427 Brassica carinata HOM05D006825 ORTHO05D008510 8.9e-128 461.1 392 60.5
Sc03g0003620 Simmondsia chinensis HOM05D006825 ORTHO05D008510 4.4e-127 458.8 353 64.3
Sed0006507 Sechium edule HOM05D000348 ORTHO05D000244 1.3e-123 447.2 361 62.6
Zm00001eb417020 Zea mays HOM05D006825 ORTHO05D008510 4.3e-122 442.2 354 62.7
Ah.03g148930 Amaranthus hybridus HOM05D006825 ORTHO05D008510 1.2e-119 434.1 403 56.8
Sopen03g006200 Solanum pennellii HOM05D006825 ORTHO05D008510 9.8e-119 431.0 310 71.6
Actinidia17432 Actinidia chinensis HOM05D006825 ORTHO05D008510 2.9e-118 429.5 356 61.5
ClCG01G020380 Citrullus lanatus HOM05D000348 ORTHO05D000244 4.9e-118 428.7 494 49.6
ECA232G1215 Erigeron canadensis HOM05D006825 ORTHO05D008510 1.6e-116 423.7 314 67.5
Manes.01G148100 Manihot esculenta HOM05D006825 ORTHO05D008510 4.3e-114 415.6 310 65.8
Lalb_Chr05g0229811 Lupinus albus HOM05D006825 ORTHO05D008510 5.6e-114 415.2 316 63.9
Os02g0320100 Oryza sativa ssp. japonica HOM05D006825 ORTHO05D008510 2.3e-112 409.8 339 61.4
Phvul.003G264100 Phaseolus vulgaris HOM05D006825 ORTHO05D008510 6.8e-112 408.3 328 62.2
Psat4g100720 Pisum sativum HOM05D006825 ORTHO05D008510 2.9e-110 402.9 360 57.5
Pp3c17_24030 Physcomitrium patens HOM05D006825 ORTHO05D008510 4.9e-110 402.1 411 52.8
CARHR281560 Cardamine hirsuta HOM05D006825 ORTHO05D008510 2.4e-109 399.8 331 61.3
AagrBONN_evm.TU.Sc2ySwM_344.4862 Anthoceros agrestis HOM05D006825 ORTHO05D008510 8.1e-105 384.8 363 54.8
Mapoly0052s0057 Marchantia polymorpha HOM05D006825 ORTHO05D008510 1.1e-104 384.4 374 55.1
SMO347G0256 Selaginella moellendorffii HOM05D006825 ORTHO05D008510 8.4e-102 374.8 397 49.6
SHI46760 Sapria himalayana HOM05D006825 ORTHO05D008510 3.0e-91 339.7 325 51.4
SalBow7G2494 Salvia bowleyana HOM05D006825 ORTHO05D008510 4.0e-88 329.3 293 59.0
Atru.chr6.2520 Acer truncatum HOM05D006825 ORTHO05D008510 2.2e-86 323.6 234 67.1
TPR.G39556 Trifolium pratense HOM05D006825 ORTHO05D008510 1.2e-76 291.2 208 69.2
FAN23G1707 Fragaria x ananassa HOM05D000348 ORTHO05D000244 2.7e-76 290.0 315 50.2
TPR.G8413 Trifolium pratense HOM05D006825 ORTHO05D008510 8.7e-67 258.5 177 68.9
SEGI_00238 Sequoiadendron giganteum HOM05D006825 ORTHO05D008510 1.5e-58 231.1 175 64.0
SEGI_17861 Sequoiadendron giganteum HOM05D006825 ORTHO05D008510 1.5e-58 231.1 170 67.6
CBR_g38194 Chara braunii HOM05D006825 ORTHO05D008510 1.5e-45 188.0 179 54.7
SEGI_38048 Sequoiadendron giganteum HOM05D006825 ORTHO05D008510 2.3e-35 154.1 161 51.6
Lalb_Chr05g0229821 Lupinus albus HOM05D006825 ORTHO05D008510 3.7e-33 146.7 85 82.4
VMungo0027G0001 Vigna mungo HOM05D006825 ORTHO05D008510 1.6e-31 141.4 207 43.0
arahy.Tifrunner.gnm1.ann1.X807D9 Arachis hypogaea HOM05D006825 ORTHO05D008510 3.8e-30 136.7 87 78.2
arahy.Tifrunner.gnm1.ann1.K0MBH8 Arachis hypogaea HOM05D006825 ORTHO05D008510 1.8e-24 117.9 89 60.7
ECA232G4867 Erigeron canadensis HOM05D006825 ORTHO05D008510 1.1e-21 108.6 86 54.7
SEGI_39386 Sequoiadendron giganteum HOM05D006825 ORTHO05D008510 2.3e-19 100.9 94 52.1
HanXRQChr02g0040701 Helianthus annuus HOM05D006825 ORTHO05D008510 1.6e-12 78.2 44 79.5
COL.COLO4_22444 Corchorus olitorius HOM05D006825 ORTHO05D008510 3.6e-12 77.0 44 79.5
Cc06_g09000 Coffea canephora HOM05D006825 ORTHO05D008510 4.7e-12 76.6 49 71.4
Aa31LG1G7660 Aethionema arabicum HOM05D005309 ORTHO05D006648 2.0e-10 71.2 351 21.9
Sp1g05320 Schrenkiella parvula HOM05D005309 ORTHO05D006648 3.4e-10 70.5 346 23.7
Thhalv10007146m.g Eutrema salsugineum HOM05D005309 ORTHO05D006648 4.4e-10 70.1 344 23.3
CARHR006170 Cardamine hirsuta HOM05D005309 ORTHO05D006648 5.8e-10 69.7 354 22.0
Lj4A221T37 Lonicera japonica HOM05D006825 ORTHO05D008510 5.8e-10 69.7 37 81.1
AL1G16590 Arabidopsis lyrata HOM05D005309 ORTHO05D006648 7.5e-10 69.3 352 21.9
A08p35920 Brassica napus HOM05D005309 ORTHO05D006648 1.3e-09 68.6 347 23.9
C08p02650 Brassica napus HOM05D005309 ORTHO05D006648 1.3e-09 68.6 343 23.9
HPP92_023436 Vanilla planifolia HOM05D005309 ORTHO05D006648 1.7e-09 68.2 343 25.4
Cre50.g761447 Chlamydomonas reinhardtii HOM05D001724 ORTHO05D007284 2.2e-09 67.8 272 24.3
Mapoly0025s0011 Marchantia polymorpha HOM05D005309 ORTHO05D006648 2.2e-09 67.8 366 25.1
Ah.04g166610 Amaranthus hybridus HOM05D001724 ORTHO05D007284 2.9e-09 67.4 313 24.9
AUR62012368 Chenopodium quinoa HOM05D005309 ORTHO05D006648 3.7e-09 67.0 341 23.5
BolC8t47061H Brassica oleracea HOM05D005309 ORTHO05D006648 4.9e-09 66.6 343 23.9
BraA08t35499Z Brassica rapa HOM05D005309 ORTHO05D006648 8.3e-09 65.9 347 23.6
Sc09g0008320 Simmondsia chinensis HOM05D005309 ORTHO05D006648 8.3e-09 65.9 330 24.5
Cre13.g602300 Chlamydomonas reinhardtii HOM05D003208 ORTHO05D019623 1.4e-08 65.1 280 25.4
Sabra05G0155700 Salix brachista HOM05D005309 ORTHO05D006648 1.4e-08 65.1 335 23.9
Manes.15G059300 Manihot esculenta HOM05D001724 ORTHO05D007284 1.9e-08 64.7 305 24.9
Pp3c12_23090 Physcomitrium patens HOM05D005309 ORTHO05D006648 1.9e-08 64.7 407 23.3
Lsat_1_v5_gn_4_26360 Lactuca sativa HOM05D005309 ORTHO05D006648 2.4e-08 64.3 339 23.6
PRCOL_00002419 Prasinoderma coloniale HOM05D003208 ORTHO05D004103 2.4e-08 64.3 280 22.9
Ah.10g035950 Amaranthus hybridus HOM05D005309 ORTHO05D006648 3.2e-08 63.9 331 23.6
BcaNung07076 Brassica carinata HOM05D005309 ORTHO05D006648 3.2e-08 63.9 358 23.7
BolC5t29253H Brassica oleracea HOM05D005309 ORTHO05D006648 3.2e-08 63.9 358 23.7
Hund02144 Selenicereus undatus HOM05D005309 ORTHO05D006648 3.2e-08 63.9 335 21.8
C01p51890 Brassica napus HOM05D001724 ORTHO05D007284 4.1e-08 63.5 273 24.5
BolC1t05137H Brassica oleracea HOM05D001724 ORTHO05D007284 4.1e-08 63.5 273 24.5
Solyc12g015710.2 Solanum lycopersicum HOM05D001724 ORTHO05D007284 4.1e-08 63.5 273 24.2
EL10Ac2g04244 Beta vulgaris HOM05D005309 ORTHO05D006648 5.4e-08 63.2 349 21.2
CAN.G275.11 Capsicum annuum HOM05D005309 ORTHO05D006648 5.4e-08 63.2 348 24.4
Migut.M00059 Erythranthe guttata HOM05D005309 ORTHO05D006648 5.4e-08 63.2 328 23.8
C05p04800 Brassica napus HOM05D005309 ORTHO05D006648 7.0e-08 62.8 358 23.7
Medtr8g075450 Medicago truncatula HOM05D006825 ORTHO05D048890 1.2e-07 62.0 40 70.0
Sp3g11360 Schrenkiella parvula HOM05D001724 ORTHO05D007284 1.2e-07 62.0 273 23.8
CSS0016258 Camellia sinensis var. sinensis HOM05D005309 ORTHO05D006648 1.6e-07 61.6 357 22.4
CBR_g46746 Chara braunii HOM05D003409 ORTHO05D019623 1.6e-07 61.6 291 25.4
A01p40360 Brassica napus HOM05D001724 ORTHO05D007284 2.0e-07 61.2 273 24.2
BraA01t04071Z Brassica rapa HOM05D001724 ORTHO05D007284 2.0e-07 61.2 273 24.2
PGR142G1004 Punica granatum HOM05D005309 ORTHO05D006648 2.0e-07 61.2 351 21.4
CSS0009662 Camellia sinensis var. sinensis HOM05D005309 ORTHO05D006648 2.7e-07 60.8 343 23.6
HanXRQChr15g0492631 Helianthus annuus HOM05D001724 ORTHO05D007284 2.7e-07 60.8 278 24.8
TWI56G0926 Tripterygium wilfordii HOM05D001724 ORTHO05D007284 2.7e-07 60.8 309 24.3
unitig_746.g26709 Utricularia gibba HOM05D001724 ORTHO05D007284 2.7e-07 60.8 273 25.6
CANSAT64G0469 Cannabis sativa HOM05D005309 ORTHO05D006648 3.5e-07 60.5 360 23.6
Atru.chr3.1361 Acer truncatum HOM05D003208 ORTHO05D004103 4.6e-07 60.1 259 25.1
Aqoxy4G00092 Aquilegia oxysepala HOM05D005309 ORTHO05D006648 4.6e-07 60.1 355 22.5
Psat0s2453g0160 Pisum sativum HOM05D006825 ORTHO05D008510 4.6e-07 60.1 71 43.7
Os08g0484400 Oryza sativa ssp. japonica HOM05D003208 ORTHO05D004103 7.8e-07 59.3 278 24.5
AagrBONN_evm.TU.Sc2ySwM_362.1083 Anthoceros agrestis HOM05D005309 ORTHO05D006648 1.0e-06 58.9 364 22.5
Ciclev10010260m.g Citrus clementina HOM05D001724 ORTHO05D007284 1.0e-06 58.9 145 32.4
Sopen12g007630 Solanum pennellii HOM05D001724 ORTHO05D007284 1.0e-06 58.9 273 23.4
Potri.005G204900 Populus trichocarpa HOM05D005309 ORTHO05D006648 1.3e-06 58.5 337 22.3
Cpa.g.sc50.107 Carica papaya HOM05D005309 ORTHO05D006648 1.7e-06 58.2 347 22.5
CDE10G0727 Ceratophyllum demersum HOM05D003208 ORTHO05D004103 1.7e-06 58.2 264 23.5
Cfa023077 Carpinus fangiana HOM05D005309 ORTHO05D006648 2.3e-06 57.8 350 22.6
Hma1.2p1_0147F.1_g065840 Hydrangea macrophylla HOM05D005309 ORTHO05D006648 2.3e-06 57.8 350 23.4
PSO541G6316 Papaver somniferum HOM05D001724 ORTHO05D007284 2.3e-06 57.8 137 33.6
Mapoly0080s0050 Marchantia polymorpha HOM05D001724 ORTHO05D007284 3.0e-06 57.4 274 24.8
Medtr5g091110 Medicago truncatula HOM05D005309 ORTHO05D006648 3.0e-06 57.4 353 23.2
Thecc.07G012400 Theobroma cacao HOM05D001724 ORTHO05D007284 3.0e-06 57.4 273 24.2
Lj8C179G13 Lonicera japonica HOM05D001724 ORTHO05D007284 5.0e-06 56.6 273 23.4
Oeu029978.1 Olea europaea HOM05D005309 ORTHO05D006648 6.6e-06 56.2 352 22.7
Sed0018597 Sechium edule HOM05D003208 ORTHO05D004103 8.6e-06 55.8 284 25.4


User provided reference genes

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