Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 1.5e-189 666.0 341 100.0
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.9e-171 605.9 343 89.8
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 2.8e-167 592.0 343 86.6
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 3.7e-167 591.7 341 87.4
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 8.3e-167 590.5 342 86.8
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 8.3e-167 590.5 342 86.8
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 3.1e-166 588.6 341 87.4
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 8.5e-164 580.5 343 86.6
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 3.2e-163 578.6 341 86.5
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 1.4e-161 573.2 341 84.2
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 4.0e-161 571.6 341 83.6
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 4.4e-160 568.2 341 83.9
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 7.5e-160 567.4 332 84.3
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 2.8e-159 565.5 341 83.9
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 3.7e-159 565.1 344 82.8
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 3.7e-159 565.1 342 82.7
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 6.3e-159 564.3 342 82.5
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 1.1e-158 563.5 343 82.8
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 1.8e-158 562.8 332 83.7
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 2.4e-158 562.4 344 82.3
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 7.0e-158 560.8 344 82.0
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 9.2e-158 560.5 342 81.3
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 1.6e-157 559.7 343 83.1
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 2.0e-157 559.3 341 82.4
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 4.5e-157 558.1 345 83.2
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 7.7e-157 557.4 346 80.6
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 7.7e-157 557.4 339 81.7
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 3.8e-156 555.1 348 79.6
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 5.0e-156 554.7 348 79.6
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 6.6e-156 554.3 347 81.3
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 6.6e-156 554.3 332 81.9
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 8.6e-156 553.9 346 80.1
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.1e-155 553.5 345 80.0
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.5e-155 553.1 346 80.1
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 1.9e-155 552.7 355 78.0
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 3.3e-155 552.0 319 85.9
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 4.3e-155 551.6 340 81.2
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 9.5e-155 550.4 341 80.1
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 1.2e-154 550.1 324 82.7
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 1.2e-154 550.1 345 78.8
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 2.1e-154 549.3 342 79.2
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 3.6e-154 548.5 351 79.8
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 4.7e-154 548.1 323 81.7
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 4.7e-154 548.1 341 80.6
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 6.1e-154 547.7 351 80.9
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 8.0e-154 547.4 338 82.0
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 8.0e-154 547.4 339 79.9
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 1.0e-153 547.0 343 79.9
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 1.0e-153 547.0 345 80.3
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 1.8e-153 546.2 342 79.5
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 1.8e-153 546.2 345 77.7
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 2.3e-153 545.8 342 81.3
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 4.0e-153 545.0 345 78.8
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 6.8e-153 544.3 345 78.3
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 1.2e-152 543.5 352 78.1
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 1.2e-152 543.5 342 78.7
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 2.0e-152 542.7 350 77.4
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 2.6e-152 542.3 330 82.7
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 3.4e-152 542.0 337 79.8
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 4.4e-152 541.6 325 81.8
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 1.3e-151 540.0 353 78.2
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 2.2e-151 539.3 339 79.1
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 2.2e-151 539.3 343 79.6
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 2.9e-151 538.9 348 77.9
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 2.9e-151 538.9 323 81.1
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 6.4e-151 537.7 341 78.0
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 6.4e-151 537.7 347 78.1
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 8.3e-151 537.3 323 80.8
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 1.1e-150 537.0 348 79.6
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 1.4e-150 536.6 341 78.0
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 1.4e-150 536.6 343 79.0
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.8e-150 536.2 343 79.0
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 2.4e-150 535.8 327 80.4
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 2.4e-150 535.8 344 77.0
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 4.1e-150 535.0 347 77.5
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 9.2e-150 533.9 343 79.0
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 9.2e-150 533.9 369 74.0
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 9.2e-150 533.9 345 76.8
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 1.6e-149 533.1 335 79.4
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 2.0e-149 532.7 343 77.8
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 4.6e-149 531.6 341 76.5
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 4.6e-149 531.6 341 76.5
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 4.6e-149 531.6 341 76.5
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 4.6e-149 531.6 326 80.7
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.0e-148 530.4 344 79.9
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 3.9e-148 528.5 341 77.1
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 3.9e-148 528.5 341 77.1
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 6.6e-148 527.7 343 76.4
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 1.5e-147 526.6 341 77.1
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 1.9e-147 526.2 348 75.6
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 1.9e-147 526.2 348 75.6
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 2.5e-147 525.8 349 75.4
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 4.3e-147 525.0 348 75.6
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 2.1e-146 522.7 323 79.3
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 2.8e-146 522.3 323 79.3
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 3.6e-146 521.9 344 76.5
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 4.7e-146 521.5 346 74.6
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 4.7e-146 521.5 351 74.6
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 8.0e-146 520.8 351 74.4
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 8.0e-146 520.8 341 77.4
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 1.0e-145 520.4 323 78.0
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 1.0e-145 520.4 323 78.6
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 1.2e-144 516.9 323 78.0
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 1.2e-144 516.9 354 73.2
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 1.5e-144 516.5 337 76.9
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 2.6e-144 515.8 323 78.0
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 4.4e-144 515.0 344 76.5
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 7.5e-144 514.2 344 78.5
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 1.3e-143 513.5 362 72.7
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 4.9e-143 511.5 343 74.9
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 1.1e-139 500.4 341 73.3
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 8.1e-138 494.2 384 68.8
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.8e-137 493.0 299 82.6
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.6e-136 489.2 344 76.5
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 1.3e-135 486.9 340 74.1
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 5.4e-134 481.5 348 71.3
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 1.0e-132 477.2 341 72.4
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 1.3e-132 476.9 324 73.1
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 3.9e-132 475.3 347 70.9
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 3.9e-132 475.3 347 70.9
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 5.1e-132 474.9 341 73.3
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 3.3e-131 472.2 344 69.5
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 8.1e-130 467.6 344 71.5
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 8.9e-129 464.2 292 80.5
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 8.9e-129 464.2 292 80.5
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 5.8e-128 461.5 345 67.8
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 5.8e-128 461.5 346 67.6
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 1.1e-126 457.2 323 67.2
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 9.2e-126 454.1 319 68.3
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 1.2e-125 453.8 324 68.8
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 7.8e-125 451.1 344 68.9
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 3.3e-123 445.7 324 66.0
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 1.1e-118 430.6 319 64.3
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 5.1e-116 421.8 271 77.5
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 1.2e-112 410.6 327 61.5
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.5e-112 410.2 319 61.8
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 3.2e-110 402.5 322 61.2
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 8.7e-108 394.4 231 82.7
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 3.9e-100 369.0 229 77.7
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 1.1e-99 367.5 255 72.5
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 1.9e-94 350.1 201 82.6
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 4.6e-85 318.9 298 54.7
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 7.9e-85 318.2 199 78.9
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 2.6e-80 303.1 248 63.3
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 5.9e-72 275.4 185 77.8
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 2.8e-66 256.5 182 64.8
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 2.8e-66 256.5 182 64.8
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 1.5e-59 234.2 165 66.7
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 1.1e-57 228.0 131 83.2
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 3.1e-57 226.5 119 90.8
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 4.1e-57 226.1 123 87.8
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.0e-55 221.5 122 82.8
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 1.9e-46 190.7 164 62.8
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 1.6e-45 187.6 164 62.2
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 1.5e-43 181.0 164 61.0
AagrBONN_evm.TU.Sc2ySwM_228.5394 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.5e-38 163.7 144 56.2
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 8.9e-36 155.2 180 52.2
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 1.5e-30 137.9 118 66.1
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 5.8e-27 125.9 92 69.6
EL10Ac4g09003 Beta vulgaris HOM05D004257 ORTHO05D005202 1.7e-26 124.4 70 84.3
Rhsim05G0133300 Rhododendron simsii HOM05D004257 ORTHO05D005202 6.0e-24 115.9 92 66.3
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 2.1e-21 107.5 78 67.9
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 3.7e-18 96.7 71 66.2
Pp3c2_23370 Physcomitrium patens HOM05D004257 ORTHO05D005202 3.2e-17 93.6 115 43.5
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 2.3e-15 87.4 78 56.4
Rhsim04G0042100 Rhododendron simsii HOM05D004257 ORTHO05D005202 6.8e-12 75.9 145 39.3
Lsat_1_v5_gn_6_26721 Lactuca sativa HOM05D004257 ORTHO05D230427 1.2e-08 65.1 42 76.2
RhsimUnG0176200 Rhododendron simsii HOM05D000026 ORTHO05D000127 1.2e-08 65.1 51 64.7
CDE04G3164 Ceratophyllum demersum HOM05D004257 ORTHO05D130150 7.8e-08 62.4 36 75.0


User provided reference genes

Program Settings