Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 0.0e+00 1202.6 593 100.0
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 2.1e-271 938.7 597 76.7
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 4.8e-271 937.6 602 76.4
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 1.3e-263 912.9 597 74.5
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 3.9e-257 891.3 597 72.9
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 7.4e-256 887.1 595 72.8
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 1.3e-255 886.3 595 72.3
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 6.3e-255 884.0 597 72.9
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 8.2e-255 883.6 597 72.9
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 5.0e-252 874.4 596 72.1
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 1.4e-251 872.8 598 71.4
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 3.2e-251 871.7 593 72.0
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 3.0e-249 865.1 596 71.1
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 1.1e-248 863.2 596 71.6
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 1.5e-248 862.8 600 70.8
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 2.6e-248 862.1 646 67.8
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 4.4e-248 861.3 599 69.9
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 2.2e-247 859.0 597 71.7
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 1.8e-246 855.9 597 71.0
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 4.1e-246 854.7 597 70.0
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 2.0e-245 852.4 597 69.8
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 2.2e-244 849.0 599 68.4
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 5.0e-244 847.8 597 69.3
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 6.5e-244 847.4 597 69.3
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 1.5e-243 846.3 597 69.3
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 4.2e-243 844.7 597 70.0
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 6.1e-242 840.9 597 69.7
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 3.0e-241 838.6 631 66.2
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 6.7e-241 837.4 597 69.2
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 8.8e-241 837.0 598 68.9
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 1.4e-238 829.7 597 68.8
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 9.1e-238 827.0 597 69.8
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 2.0e-237 825.9 596 68.5
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 2.2e-236 822.4 597 66.3
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 3.8e-236 821.6 599 68.8
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 1.9e-235 819.3 593 68.0
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 1.2e-234 816.6 596 67.4
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 2.7e-234 815.5 602 66.6
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 3.6e-234 815.1 596 67.1
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 1.0e-233 813.5 670 61.5
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 4.4e-232 808.1 597 66.0
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 2.8e-231 805.4 636 63.7
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 4.8e-231 804.7 637 64.8
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 4.1e-230 801.6 583 67.9
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 7.0e-230 800.8 592 65.5
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 2.7e-229 798.9 555 71.7
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 7.7e-229 797.3 599 66.8
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 2.3e-228 795.8 599 66.6
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 3.8e-228 795.0 599 66.1
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 2.5e-227 792.3 619 63.8
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 4.2e-227 791.6 599 65.4
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 1.6e-226 789.6 557 71.3
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 2.1e-226 789.3 595 66.4
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 3.0e-225 785.4 594 66.2
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 6.8e-225 784.3 596 64.4
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 5.7e-224 781.2 593 65.9
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 4.9e-223 778.1 570 66.1
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 1.6e-221 773.1 592 65.2
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 1.7e-220 769.6 598 64.7
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 1.6e-218 763.1 536 69.8
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 4.0e-217 758.4 599 64.4
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 1.2e-216 756.9 599 64.4
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 2.0e-216 756.1 598 63.4
AUR62015479 Chenopodium quinoa HOM05D006440 ORTHO05D003987 2.6e-216 755.7 600 63.7
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 2.2e-215 752.7 595 62.4
Psat6g132960 Pisum sativum HOM05D006440 ORTHO05D003987 2.2e-215 752.7 593 65.3
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 2.9e-215 752.3 570 66.7
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 7.0e-214 747.7 595 63.4
CDE06G0279 Ceratophyllum demersum HOM05D006440 ORTHO05D003987 1.6e-213 746.5 600 63.7
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 3.9e-212 741.9 576 64.6
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 2.1e-210 736.1 533 67.5
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 1.1e-206 723.8 550 64.7
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 1.4e-206 723.4 599 60.3
AUR62002263 Chenopodium quinoa HOM05D006440 ORTHO05D003987 2.3e-204 716.1 687 55.2
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 5.6e-203 711.4 599 59.1
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 2.8e-202 709.1 512 67.6
Thecc.04G250600 Theobroma cacao HOM05D006440 ORTHO05D003987 2.8e-202 709.1 593 62.1
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 3.6e-202 708.8 610 61.6
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 2.0e-200 703.0 533 65.5
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 9.9e-200 700.7 598 58.9
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 4.9e-199 698.4 596 58.9
Actinidia04464 Actinidia chinensis HOM05D006440 ORTHO05D003987 8.3e-199 697.6 519 66.9
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 4.1e-198 695.3 598 58.7
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 4.1e-198 695.3 599 59.3
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 1.6e-197 693.3 598 59.2
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 2.7e-197 692.6 596 58.6
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 1.7e-196 689.9 597 60.0
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 5.1e-196 688.3 589 60.3
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 6.6e-196 688.0 656 56.4
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 4.0e-193 678.7 599 58.8
AL8G16820 Arabidopsis lyrata HOM05D006440 ORTHO05D003987 6.8e-193 677.9 596 58.1
CARHR180120 Cardamine hirsuta HOM05D006440 ORTHO05D003987 1.5e-192 676.8 599 56.9
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.5e-192 676.8 484 69.6
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 4.4e-192 675.2 617 57.4
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 5.1e-180 635.2 555 57.8
Nitab4.5_0000342g0190 Nicotiana tabacum HOM05D006440 ORTHO05D003987 3.9e-164 582.4 527 56.4
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 3.7e-146 522.7 392 66.1
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 1.2e-141 507.7 376 67.3
Pp3c3_14850 Physcomitrium patens HOM05D006440 ORTHO05D003987 3.9e-140 502.7 614 46.6
Mapoly0028s0034 Marchantia polymorpha HOM05D006440 ORTHO05D003987 1.9e-126 457.2 449 51.4
SMO117G0008 Selaginella moellendorffii HOM05D006440 ORTHO05D003987 3.2e-126 456.4 597 44.1
MD16G1213700 Malus domestica HOM05D006440 ORTHO05D003987 1.8e-105 387.5 534 45.7
PGSC0003DMG400017256 Solanum tuberosum HOM05D006440 ORTHO05D003987 8.3e-98 362.1 245 69.4
Zm00001eb087460 Zea mays HOM05D006440 ORTHO05D003987 1.8e-84 317.8 250 60.8
Cpa.g.sc44.85 Carica papaya HOM05D006440 ORTHO05D003987 2.3e-84 317.4 205 74.1
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 8.1e-77 292.4 286 53.8
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 8.4e-74 282.3 621 34.3
HPP92_027995 Vanilla planifolia HOM05D006440 ORTHO05D003987 9.3e-65 252.3 175 66.9
HPP92_008423 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.6e-40 171.8 143 63.6
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 2.5e-38 164.5 162 53.7
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 1.6e-32 145.2 110 60.9
HanXRQChr13g0422461 Helianthus annuus HOM05D006440 ORTHO05D003987 6.7e-31 139.8 81 72.8
Dinv44661 Davidia involucrata HOM05D006440 ORTHO05D003987 3.2e-25 120.9 107 61.7
Hma1.2p1_1716F.1_g299120 Hydrangea macrophylla HOM05D006440 ORTHO05D003987 7.9e-24 116.3 69 72.5
Cfa026271 Carpinus fangiana HOM05D006440 ORTHO05D003987 9.1e-20 102.8 314 27.1
SHI00689 Sapria himalayana HOM05D006440 ORTHO05D003987 3.3e-14 84.3 52 86.5
Nn5g28601 Nelumbo nucifera HOM05D006440 ORTHO05D003987 9.7e-14 82.8 55 67.3
SHI00694 Sapria himalayana HOM05D006440 ORTHO05D003987 2.6e-11 74.7 87 48.3
SEGI_01343 Sequoiadendron giganteum HOM05D000173 ORTHO05D004400 7.2e-09 66.6 354 22.6
CiPaw.16G084900 Carya illinoinensis HOM05D000173 ORTHO05D004400 9.4e-09 66.2 355 23.1
CDE07G0020 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 2.1e-08 65.1 353 23.2
MD16G1213300 Malus domestica HOM05D006440 ORTHO05D003987 2.7e-08 64.7 45 60.0
Haze_11337 Corylus avellana HOM05D006440 ORTHO05D003987 6.1e-08 63.5 32 90.6
MELO3C017295.2 Cucumis melo HOM05D000173 ORTHO05D004400 6.1e-08 63.5 360 23.3
Sc04g0003650 Simmondsia chinensis HOM05D000173 ORTHO05D004400 6.1e-08 63.5 430 21.9
AL1G30880 Arabidopsis lyrata HOM05D000173 ORTHO05D004400 8.0e-08 63.2 382 21.5
Sed0017324 Sechium edule HOM05D000173 ORTHO05D004400 8.0e-08 63.2 356 23.3
AT1G18450 Arabidopsis thaliana HOM05D000173 ORTHO05D004400 1.4e-07 62.4 382 21.5
SHI00693 Sapria himalayana HOM05D006440 ORTHO05D003987 1.4e-07 62.4 65 50.8
HPP92_025882 Vanilla planifolia HOM05D000173 ORTHO05D004400 1.4e-07 62.4 337 24.9
THA.LOC104813899 Tarenaya hassleriana HOM05D000173 ORTHO05D004400 1.8e-07 62.0 364 22.0
CANSAT35G1697 Cannabis sativa HOM05D000173 ORTHO05D004400 3.0e-07 61.2 354 22.3
Sed0004858 Sechium edule HOM05D000173 ORTHO05D004400 3.0e-07 61.2 360 23.1
CsaV3_1G003700 Cucumis sativus L. HOM05D000173 ORTHO05D004400 4.0e-07 60.8 360 22.8
CDE04G0761 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 1.2e-06 59.3 348 22.7
SHI00691 Sapria himalayana HOM05D000023 ORTHO05D000014 1.2e-06 59.3 44 56.8
Thhalv10007641m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 2.0e-06 58.5 356 22.2
Carub.0001s1808 Capsella rubella HOM05D000173 ORTHO05D004400 2.6e-06 58.2 356 21.9
Sp1g16390 Schrenkiella parvula HOM05D000173 ORTHO05D004400 2.6e-06 58.2 382 21.5
Dinv40423 Davidia involucrata HOM05D000173 ORTHO05D004400 3.4e-06 57.8 354 23.2
CARHR019060 Cardamine hirsuta HOM05D000173 ORTHO05D004400 7.5e-06 56.6 356 21.6


User provided reference genes

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