Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 1.4e-153 546.2 276 100.0
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 1.8e-103 379.8 283 72.8
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 1.8e-103 379.8 281 71.9
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 8.9e-103 377.5 281 71.5
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 1.2e-102 377.1 289 70.6
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.5e-102 376.7 292 71.9
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 4.4e-102 375.2 291 70.8
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 7.5e-102 374.4 289 71.3
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 1.3e-101 373.6 291 70.4
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 2.2e-101 372.9 286 72.0
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 4.9e-101 371.7 278 72.3
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 8.3e-101 370.9 285 72.3
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 1.9e-100 369.8 283 71.0
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 1.9e-100 369.8 211 84.8
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.9e-100 369.8 272 73.2
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 3.2e-100 369.0 238 79.4
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 4.1e-100 368.6 219 84.9
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 9.2e-100 367.5 281 71.2
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 9.2e-100 367.5 219 84.5
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 2.0e-99 366.3 281 70.8
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 2.0e-99 366.3 283 70.7
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 2.7e-99 365.9 284 70.8
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 2.7e-99 365.9 235 79.6
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 2.7e-99 365.9 212 86.3
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 3.5e-99 365.5 273 71.8
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 4.6e-99 365.2 280 69.3
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 4.6e-99 365.2 268 72.8
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 6.0e-99 364.8 289 70.9
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 7.8e-99 364.4 280 69.6
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 7.8e-99 364.4 235 80.4
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 2.3e-98 362.8 287 67.2
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 3.0e-98 362.5 225 81.3
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 3.9e-98 362.1 211 85.3
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 5.0e-98 361.7 219 81.3
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 5.0e-98 361.7 232 79.3
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 6.6e-98 361.3 211 84.4
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 6.6e-98 361.3 270 71.1
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 6.6e-98 361.3 217 82.9
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 6.6e-98 361.3 252 75.0
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 6.6e-98 361.3 213 85.4
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 8.6e-98 360.9 239 76.2
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 8.6e-98 360.9 278 70.1
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 8.6e-98 360.9 229 80.3
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 1.1e-97 360.5 269 72.1
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 1.1e-97 360.5 239 77.0
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 1.5e-97 360.1 283 70.3
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 1.5e-97 360.1 220 82.3
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 1.5e-97 360.1 211 83.9
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 1.9e-97 359.8 281 70.1
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 2.5e-97 359.4 198 89.9
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 2.5e-97 359.4 256 74.2
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 2.5e-97 359.4 281 70.1
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 3.3e-97 359.0 279 70.6
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 4.3e-97 358.6 210 84.3
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 4.3e-97 358.6 198 88.9
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 5.6e-97 358.2 234 78.6
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 7.3e-97 357.8 284 69.4
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 1.2e-96 357.1 210 81.4
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 1.6e-96 356.7 235 79.6
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.6e-96 356.7 235 78.7
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 1.6e-96 356.7 245 73.5
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 2.1e-96 356.3 213 84.0
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 2.1e-96 356.3 289 68.5
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 2.8e-96 355.9 236 78.8
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 2.8e-96 355.9 198 88.9
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 3.6e-96 355.5 234 77.4
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 3.6e-96 355.5 277 69.7
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 3.6e-96 355.5 287 69.3
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 3.6e-96 355.5 234 78.6
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 3.6e-96 355.5 288 70.1
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 6.2e-96 354.8 281 69.0
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 1.1e-95 354.0 199 86.4
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 1.4e-95 353.6 232 78.0
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 1.4e-95 353.6 224 79.5
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 1.4e-95 353.6 214 83.6
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.8e-95 353.2 268 70.5
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 3.1e-95 352.4 283 69.3
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 3.1e-95 352.4 213 82.2
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 3.1e-95 352.4 235 77.9
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 3.1e-95 352.4 258 72.9
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 3.1e-95 352.4 224 78.6
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 4.0e-95 352.1 279 66.7
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 5.2e-95 351.7 237 78.1
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 5.2e-95 351.7 236 78.0
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 6.8e-95 351.3 238 76.9
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 6.8e-95 351.3 238 76.9
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 6.8e-95 351.3 282 69.1
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 8.9e-95 350.9 278 68.3
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 1.2e-94 350.5 254 71.7
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 1.5e-94 350.1 227 78.9
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 1.5e-94 350.1 241 75.9
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 7.5e-94 347.8 269 69.9
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 1.3e-93 347.1 286 67.8
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 1.7e-93 346.7 234 76.9
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.2e-93 346.3 305 63.6
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 2.9e-93 345.9 235 76.2
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 1.1e-92 344.0 222 78.8
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 4.1e-92 342.0 198 84.3
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 4.1e-92 342.0 218 80.7
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 7.1e-92 341.3 295 65.1
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 1.6e-91 340.1 266 69.5
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 2.1e-91 339.7 267 68.5
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.1e-91 339.7 274 68.2
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.7e-91 339.3 274 68.2
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 6.0e-91 338.2 275 66.2
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 1.0e-90 337.4 222 77.0
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.3e-90 337.0 272 68.0
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.7e-90 336.7 272 68.4
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 2.3e-90 336.3 225 77.8
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 5.1e-90 335.1 228 75.9
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 3.3e-89 332.4 286 63.3
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 5.6e-89 331.6 281 67.6
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 4.7e-88 328.6 198 82.3
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.8e-87 326.6 277 66.8
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.8e-86 321.6 321 58.3
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 9.9e-86 320.9 270 65.6
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 9.2e-84 314.3 271 64.9
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 3.9e-82 308.9 309 58.6
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 1.5e-81 307.0 222 73.0
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 3.3e-81 305.8 166 89.2
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 2.8e-80 302.8 234 68.4
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 1.8e-79 300.1 288 61.1
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 9.0e-79 297.7 212 70.8
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 1.5e-78 297.0 273 62.6
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 6.4e-77 291.6 166 86.7
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 2.4e-76 289.7 193 75.1
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.6e-75 287.0 321 54.2
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.3e-74 283.1 243 64.6
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 3.0e-74 282.7 226 65.9
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 6.6e-74 281.6 214 69.6
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.9e-73 280.0 289 58.5
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 3.3e-73 279.3 219 70.3
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 9.6e-73 277.7 153 86.3
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 1.8e-71 273.5 165 80.0
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.8e-70 268.5 151 86.1
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 9.9e-70 267.7 145 90.3
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 2.9e-69 266.2 148 85.1
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.9e-69 265.4 287 55.1
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 4.2e-68 262.3 243 61.7
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 5.4e-68 261.9 237 65.8
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 3.3e-65 252.7 159 81.1
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 7.4e-65 251.5 207 66.2
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 3.4e-62 242.7 227 59.9
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 8.4e-61 238.0 149 80.5
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 1.0e-58 231.1 169 70.4
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 1.3e-58 230.7 167 72.5
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 4.0e-55 219.2 132 78.0
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 1.1e-52 211.1 208 46.6
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 5.5e-52 208.8 199 60.3
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 2.4e-47 193.4 127 74.8
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 1.0e-45 188.0 132 69.7
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 3.9e-42 176.0 350 38.3
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 1.7e-37 160.6 159 54.7
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 1.1e-36 157.9 188 42.6
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 6.7e-34 148.7 200 40.5
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 5.7e-33 145.6 228 39.0
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 7.4e-33 145.2 84 83.3
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 1.5e-20 104.4 62 80.6
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 7.2e-20 102.1 62 79.0
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 1.4e-18 97.8 87 60.9
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 9.7e-17 91.7 59 78.0
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 3.6e-11 73.2 79 49.4
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.3e-10 70.5 36 88.9
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.3e-10 70.5 158 38.6
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 3.4e-09 66.6 36 80.6
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.7e-08 64.3 55 63.6
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 1.7e-08 64.3 118 35.6
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 8.3e-08 62.0 32 87.5
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 8.3e-08 62.0 37 78.4
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.4e-07 61.2 42 69.0
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 5.4e-07 59.3 31 83.9
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 9.1e-07 58.5 34 79.4


User provided reference genes

Program Settings