Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 2061.2 975 100.0
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1598.2 974 74.8
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1573.5 975 74.6
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1571.6 974 73.6
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1560.8 986 73.0
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1560.8 971 73.8
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1557.7 976 74.4
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1557.3 960 73.8
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1557.3 968 73.7
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1556.2 976 72.7
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1552.7 971 73.8
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1550.4 971 73.2
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1542.7 972 72.3
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1541.6 973 71.5
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1541.2 974 72.7
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1540.4 966 73.6
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1537.3 967 72.5
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1536.9 971 72.6
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1536.5 967 72.5
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1536.2 971 73.0
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1531.2 973 72.4
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1530.0 970 73.4
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1527.7 969 73.9
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1526.1 976 71.7
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1525.4 974 72.1
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1525.0 968 72.7
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1525.0 964 72.3
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1521.5 975 72.7
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1521.1 970 72.9
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1520.4 973 71.7
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1520.0 967 72.9
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1519.6 969 72.9
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1518.1 963 72.5
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1515.7 975 71.5
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1515.7 971 72.2
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1508.8 967 72.7
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1507.3 965 71.4
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1506.9 968 72.1
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1506.9 972 71.1
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1505.7 969 71.2
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1505.0 962 71.6
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1505.0 976 70.2
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1504.2 973 71.5
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1504.2 974 71.8
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1504.2 966 71.7
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1503.8 972 72.2
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1503.8 971 71.6
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1502.3 967 71.1
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1502.3 976 70.2
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1501.9 973 71.1
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1499.2 966 70.3
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1499.2 972 72.3
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1498.4 968 71.5
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1497.6 977 70.7
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1497.3 978 71.4
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1493.8 982 70.2
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1492.6 967 70.6
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1492.2 981 69.7
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1492.2 957 72.0
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1491.1 955 73.0
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1491.1 968 70.8
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1488.8 969 69.9
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1488.4 970 70.7
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1488.4 968 71.1
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1488.0 974 70.8
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1487.6 976 70.0
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1487.2 972 70.3
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1485.7 971 69.8
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1481.5 963 70.9
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1479.5 976 69.4
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1477.6 963 71.0
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1476.5 973 69.6
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1476.1 968 69.7
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1476.1 967 69.9
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1474.9 970 69.4
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1474.9 975 69.2
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1473.0 974 70.9
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1472.2 965 70.3
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1471.8 975 70.3
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1471.8 965 69.9
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1470.3 969 70.1
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1466.8 971 69.4
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1466.8 975 69.6
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1463.0 975 70.1
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1455.7 969 70.0
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1451.8 971 68.9
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1450.6 967 69.9
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1450.3 966 69.9
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1449.5 977 70.2
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1445.6 982 69.2
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1444.9 982 68.1
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1443.3 920 72.7
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1435.2 978 69.1
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1430.2 978 68.9
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1427.2 977 68.3
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1426.8 976 68.0
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1426.4 959 68.7
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1423.7 965 68.4
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1420.2 978 68.4
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1420.2 978 68.4
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1419.8 976 67.9
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1419.4 969 68.0
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1415.6 976 67.8
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1409.0 978 67.9
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1406.0 978 67.8
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1402.9 871 72.4
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1398.3 961 68.8
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1396.7 978 67.3
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1395.9 976 67.3
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1393.3 978 67.6
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1392.1 978 67.2
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1389.8 983 65.9
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1380.9 1000 66.0
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1374.0 868 72.4
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1338.9 845 72.4
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1330.5 846 71.5
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1327.0 980 64.7
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1317.4 978 65.1
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1309.3 763 76.8
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1309.3 1012 61.0
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1305.8 985 62.7
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1293.9 980 64.3
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1238.8 849 67.8
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1207.2 778 71.6
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1191.0 788 69.8
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1179.5 788 69.5
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1176.8 764 70.2
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 1.1e-307 1060.1 976 54.0
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 7.6e-298 1027.3 963 52.9
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 6.0e-295 1017.7 683 69.4
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 8.7e-286 987.3 964 52.8
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 4.9e-273 944.9 962 50.1
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.8e-270 936.4 969 49.1
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 2.1e-268 929.5 701 63.1
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 5.2e-238 828.6 843 50.1
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.3e-230 803.1 562 65.8
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 4.1e-203 712.6 404 79.2
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 1.3e-132 478.4 284 76.4
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 4.8e-119 433.3 343 60.1
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 1.0e-97 362.5 376 51.1
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 3.0e-97 360.9 216 77.3
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 6.8e-97 359.8 404 45.3
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 8.6e-92 342.8 202 74.3
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 1.7e-87 328.6 275 58.2
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 8.3e-87 326.2 194 78.9
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 3.4e-72 277.7 159 78.6
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.7e-71 275.4 159 75.5
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 1.2e-69 269.2 214 60.7
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 4.4e-64 250.8 143 78.3
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 3.8e-63 247.7 642 29.9
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 2.8e-50 204.9 401 36.2
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 3.4e-40 171.4 94 78.7
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.4e-38 166.0 816 23.2
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 7.9e-37 160.2 151 53.6
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 9.6e-35 153.3 98 76.5
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 5.3e-33 147.5 164 46.3
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 9.0e-33 146.7 92 70.7
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 4.5e-32 144.4 147 49.0
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 4.9e-31 141.0 147 46.9
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.5e-27 129.4 88 62.5
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 2.2e-26 125.6 97 58.8
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 2.4e-25 122.1 183 37.7
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 7.4e-19 100.5 182 32.4
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 2.0e-16 92.4 70 62.9
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 3.4e-16 91.7 121 42.1
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 7.7e-16 90.5 114 46.5
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 2.3e-12 79.0 49 79.6
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.5e-11 76.3 47 68.1
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 2.6e-11 75.5 118 40.7
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 1.8e-09 69.3 384 23.2
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 7.0e-09 67.4 74 48.6
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 5.0e-07 61.2 78 42.3
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 7.2e-06 57.4 46 63.0


User provided reference genes

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