Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1694.1 832 100.0
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1315.1 823 78.1
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1300.4 816 77.3
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1282.7 819 76.4
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1258.0 807 75.2
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1257.7 843 73.3
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 0.0e+00 1255.7 816 74.3
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1254.6 744 80.5
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1251.9 835 73.2
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1250.3 812 74.8
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1250.0 819 75.1
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1249.2 834 73.0
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1249.2 850 72.1
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1246.9 825 73.8
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1245.0 826 73.7
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1243.4 812 73.4
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1240.3 758 77.7
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1239.6 812 73.0
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1238.4 757 77.8
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1237.2 812 72.9
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1233.8 805 73.2
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1229.5 831 72.6
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1228.4 797 74.7
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1228.0 783 75.7
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1227.6 817 72.9
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1226.5 837 71.4
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1221.1 822 71.4
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1220.3 817 72.1
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1214.9 848 72.1
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1214.9 828 72.7
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1214.5 812 72.4
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1213.7 796 73.6
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1211.8 828 71.7
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1210.7 765 75.3
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 0.0e+00 1210.3 805 72.5
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1208.7 782 73.4
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1206.8 795 73.1
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1206.0 807 72.1
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1205.7 803 72.9
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1204.5 801 72.4
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1201.8 755 76.0
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1201.0 783 74.5
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1198.7 748 75.0
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 0.0e+00 1197.2 813 71.6
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1197.2 801 73.4
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1197.2 804 72.0
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1191.4 749 75.4
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1189.9 748 75.1
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1189.9 753 74.1
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1189.1 838 69.7
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1188.7 830 69.6
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1187.6 767 74.2
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1187.2 822 70.1
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1181.4 811 70.3
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1179.9 740 74.7
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1179.1 744 74.5
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1175.6 837 70.0
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1169.1 831 70.5
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 0.0e+00 1167.1 814 70.5
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1166.8 807 70.4
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 0.0e+00 1166.4 823 68.4
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1165.2 821 69.4
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 0.0e+00 1162.9 849 68.4
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 0.0e+00 1161.0 809 68.9
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 0.0e+00 1160.2 746 73.6
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 0.0e+00 1154.8 810 69.0
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1154.4 817 69.0
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 0.0e+00 1153.3 810 69.1
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1152.9 811 68.9
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 0.0e+00 1152.9 823 68.7
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1151.3 810 68.8
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1151.0 810 69.0
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 0.0e+00 1149.4 809 68.7
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1146.3 811 68.7
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 0.0e+00 1142.9 809 68.1
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 0.0e+00 1137.1 770 70.8
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 0.0e+00 1134.4 689 77.8
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1125.9 776 71.6
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 0.0e+00 1125.5 827 69.3
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 0.0e+00 1124.0 769 70.4
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 0.0e+00 1100.9 863 62.8
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 0.0e+00 1100.1 803 67.4
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 0.0e+00 1095.9 865 63.5
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 0.0e+00 1093.2 700 74.4
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 0.0e+00 1082.0 687 74.8
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 0.0e+00 1075.5 695 73.5
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 1.3e-309 1066.2 756 70.1
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 4.8e-309 1064.3 662 76.3
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 1.1e-302 1043.1 741 67.9
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 1.5e-302 1042.7 867 61.4
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 3.5e-296 1021.5 684 70.8
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 1.3e-290 1003.0 625 77.0
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 1.1e-286 989.9 752 61.7
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 4.6e-280 968.0 742 61.2
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 1.1e-273 946.8 757 58.8
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 1.1e-262 910.2 634 68.3
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 5.9e-259 897.9 606 71.1
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 2.5e-249 865.9 620 65.3
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 9.8e-238 827.4 687 61.1
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 7.0e-228 794.7 681 55.9
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 3.0e-218 762.7 522 69.9
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 1.1e-175 621.3 802 43.5
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 2.5e-148 530.4 595 50.6
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 8.8e-146 521.9 354 67.8
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 1.9e-124 451.1 353 64.6
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 9.9e-97 359.0 262 64.9
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 3.6e-91 340.5 289 61.9
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 1.2e-78 298.9 226 65.9
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 1.2e-73 282.3 285 54.0
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 9.6e-60 236.1 148 73.6
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 1.6e-46 192.2 122 73.0
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 6.7e-45 186.8 127 68.5
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 2.5e-44 184.9 137 61.3
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 1.3e-35 156.0 106 67.0
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 1.6e-30 139.0 113 57.5
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 1.3e-27 129.4 92 67.4
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 5.0e-24 117.5 161 45.3
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 8.3e-19 100.1 105 54.3
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 1.6e-17 95.9 62 72.6
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 1.3e-16 92.8 56 80.4
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 2.6e-12 78.6 46 76.1
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 9.8e-12 76.6 43 74.4
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 8.6e-08 63.5 41 70.7
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 1.2e-06 59.7 74 45.9
Medtr5g010890 Medicago truncatula HOM05D000161 ORTHO05D036718 3.6e-06 58.2 47 63.8


User provided reference genes

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