Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 1.3e-177 626.3 322 100.0
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.6e-148 529.6 312 83.7
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 1.1e-147 526.9 318 82.4
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 1.8e-147 526.2 323 81.1
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 1.2e-146 523.5 323 82.4
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 3.4e-146 521.9 318 82.1
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 9.9e-146 520.4 323 81.4
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 1.3e-145 520.0 317 81.7
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 6.4e-145 517.7 316 81.6
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 1.4e-144 516.5 310 82.9
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 1.4e-144 516.5 316 81.6
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 2.4e-144 515.8 322 79.5
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 4.2e-144 515.0 306 84.3
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 4.2e-144 515.0 321 80.7
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 7.1e-144 514.2 316 81.0
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 9.3e-144 513.8 322 80.1
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 1.0e-142 510.4 317 79.8
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 1.3e-142 510.0 303 83.2
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 5.1e-142 508.1 311 82.6
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 8.7e-142 507.3 309 81.6
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 8.7e-142 507.3 322 79.2
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 1.9e-141 506.1 330 77.6
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 2.5e-141 505.8 319 78.4
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 3.3e-141 505.4 322 78.9
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 1.6e-140 503.1 315 80.3
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 2.1e-140 502.7 334 77.5
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 2.8e-140 502.3 313 81.2
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 6.2e-140 501.1 323 77.1
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 8.1e-140 500.7 316 79.4
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 8.1e-140 500.7 325 77.5
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 1.1e-139 500.4 323 77.4
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 2.4e-139 499.2 317 79.5
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 3.1e-139 498.8 315 81.0
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 5.3e-139 498.0 316 78.8
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 9.0e-139 497.3 327 76.1
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 1.5e-138 496.5 317 80.1
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 2.6e-138 495.7 310 80.0
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 2.6e-138 495.7 317 76.7
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 5.8e-138 494.6 310 79.0
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 1.7e-137 493.0 327 76.8
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 1.7e-137 493.0 311 79.4
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 2.2e-137 492.7 317 78.2
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 8.4e-137 490.7 302 81.5
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 2.4e-136 489.2 330 73.9
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 2.4e-136 489.2 320 76.6
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 4.2e-136 488.4 318 76.1
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 7.1e-136 487.6 317 78.5
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 1.2e-135 486.9 317 78.5
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.6e-135 486.5 318 76.1
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 2.1e-135 486.1 299 81.6
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 2.7e-135 485.7 366 70.8
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 3.5e-135 485.3 314 77.4
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 6.0e-135 484.6 318 75.5
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 7.9e-135 484.2 320 76.9
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 1.8e-134 483.0 296 81.8
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 1.1e-133 480.3 315 77.8
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 7.4e-133 477.6 298 79.5
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 7.4e-133 477.6 350 71.4
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 2.8e-132 475.7 318 76.7
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 8.1e-132 474.2 329 74.2
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 1.1e-131 473.8 313 77.0
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 2.4e-131 472.6 310 77.4
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.4e-131 472.6 311 75.6
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 3.1e-131 472.2 321 75.7
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 4.0e-131 471.9 318 74.5
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 4.0e-131 471.9 318 74.5
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 4.0e-131 471.9 318 74.5
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 6.9e-131 471.1 312 75.6
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 1.2e-130 470.3 313 75.1
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 1.2e-130 470.3 313 75.1
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 2.0e-130 469.5 319 76.2
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 2.6e-130 469.2 322 74.8
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 7.6e-130 467.6 317 75.1
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 7.6e-130 467.6 319 73.4
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 1.0e-129 467.2 323 74.6
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 1.0e-129 467.2 316 75.3
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 1.0e-129 467.2 314 75.8
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 1.3e-129 466.8 317 75.4
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 1.3e-129 466.8 317 75.4
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 1.3e-129 466.8 317 75.4
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 1.3e-129 466.8 304 77.0
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 1.3e-129 466.8 308 76.3
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 2.2e-129 466.1 324 74.1
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 4.9e-129 464.9 305 77.0
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 8.4e-129 464.2 301 75.7
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 8.4e-129 464.2 322 73.9
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 1.4e-128 463.4 315 74.6
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 2.5e-128 462.6 310 74.8
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 3.2e-128 462.2 308 75.3
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 3.2e-128 462.2 316 73.4
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 4.2e-128 461.8 312 74.7
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 5.5e-128 461.5 323 73.4
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 5.5e-128 461.5 314 73.6
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 3.5e-127 458.8 327 73.4
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 1.0e-126 457.2 327 73.1
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 3.0e-126 455.7 309 76.4
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 2.5e-125 452.6 326 70.2
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 1.3e-124 450.3 301 77.1
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 3.7e-124 448.7 266 83.5
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 3.7e-124 448.7 322 70.5
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 8.2e-124 447.6 322 70.5
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 5.3e-123 444.9 234 98.3
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 5.3e-123 444.9 327 70.6
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.2e-122 443.7 327 69.4
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.7e-121 439.9 327 68.8
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.4e-120 436.8 322 69.3
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 5.5e-120 434.9 269 80.3
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 6.3e-116 421.4 301 71.1
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 2.5e-109 399.4 324 66.7
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 3.3e-109 399.1 311 67.8
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.3e-108 397.1 229 85.6
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 3.2e-104 382.5 308 59.7
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 7.2e-104 381.3 303 60.7
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 7.2e-104 381.3 284 63.7
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 6.1e-103 378.3 258 75.2
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 3.9e-102 375.6 318 63.8
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 2.6e-101 372.9 231 80.5
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 1.3e-100 370.5 320 58.8
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 3.5e-98 362.5 300 57.7
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 5.9e-98 361.7 290 66.9
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 1.3e-97 360.5 240 75.8
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 5.0e-97 358.6 300 56.7
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.7e-95 352.8 272 71.0
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 2.4e-83 313.2 265 58.1
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.5e-80 303.1 242 67.8
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 4.4e-77 292.4 318 47.2
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 1.3e-73 280.8 307 47.9
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 2.0e-69 266.9 149 85.9
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.3e-65 254.2 167 78.4
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 2.5e-64 250.0 322 46.0
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 7.5e-53 211.8 225 47.6
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.6e-47 194.1 163 63.2
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 3.2e-43 179.9 112 78.6
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 2.1e-42 177.2 291 38.1
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 1.6e-39 167.5 407 31.7
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.2e-36 157.1 189 48.7
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 3.0e-33 146.7 104 70.2
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 8.7e-33 145.2 94 74.5
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.1e-32 144.8 94 74.5
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.1e-32 144.8 94 74.5
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 2.1e-31 140.6 114 69.3
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 4.8e-31 139.4 95 77.9
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.2e-29 134.8 82 79.3
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.5e-18 96.7 64 75.0
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.3e-17 94.7 98 56.1
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 5.1e-17 92.8 53 84.9
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.1e-15 87.4 57 77.2
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 9.0e-14 82.0 93 51.6
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 1.5e-13 81.3 48 79.2
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 1.5e-13 81.3 48 79.2
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 3.8e-12 76.6 44 79.5
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 5.7e-08 62.8 85 43.5


User provided reference genes

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