Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 8.3e-131 470.7 298 100.0
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 2.8e-94 349.4 303 78.9
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 6.2e-94 348.2 301 74.1
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 2.2e-91 339.7 316 70.3
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 4.9e-91 338.6 306 76.1
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 1.4e-90 337.0 306 66.0
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 3.2e-90 335.9 301 72.8
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 4.2e-90 335.5 305 75.7
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 2.1e-89 333.2 306 72.2
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 2.7e-89 332.8 293 76.5
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 3.5e-89 332.4 308 76.0
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 1.3e-88 330.5 301 73.8
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 1.3e-88 330.5 293 73.4
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 1.8e-88 330.1 301 73.1
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 2.3e-88 329.7 301 63.5
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 3.0e-88 329.3 306 70.3
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 3.9e-88 328.9 302 75.8
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 2.5e-87 326.2 301 74.8
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 2.5e-87 326.2 306 66.3
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 3.7e-86 322.4 310 59.7
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 8.2e-86 321.2 299 71.6
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 8.2e-86 321.2 306 71.2
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 8.2e-86 321.2 274 81.0
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 2.4e-85 319.7 301 68.1
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 4.1e-85 318.9 307 66.1
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 4.1e-85 318.9 297 67.3
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 6.9e-85 318.2 311 66.9
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 1.5e-84 317.0 304 65.1
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 2.6e-84 316.2 307 67.1
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 5.9e-84 315.1 303 68.0
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 5.9e-84 315.1 273 75.5
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 7.6e-84 314.7 271 76.0
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 1.0e-83 314.3 306 68.3
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 1.0e-83 314.3 298 63.4
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 2.2e-83 313.2 297 58.9
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 2.2e-83 313.2 300 64.7
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 2.9e-83 312.8 270 63.3
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 2.9e-83 312.8 303 67.7
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 3.8e-83 312.4 308 63.0
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 5.0e-83 312.0 310 69.4
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 5.0e-83 312.0 300 65.0
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 8.4e-83 311.2 296 66.6
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 3.6e-81 305.8 242 79.3
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 2.3e-80 303.1 303 70.0
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 2.3e-80 303.1 301 63.8
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 3.0e-80 302.8 305 66.9
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 5.1e-80 302.0 317 67.5
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 6.7e-80 301.6 305 66.6
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 6.7e-80 301.6 273 62.3
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 8.7e-80 301.2 309 64.7
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 8.7e-80 301.2 298 59.1
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 1.9e-79 300.1 307 58.0
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 2.5e-79 299.7 342 66.1
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 3.3e-79 299.3 305 63.9
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 4.3e-79 298.9 298 58.4
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 9.7e-79 297.7 301 56.1
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 1.1e-77 294.3 286 64.0
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 1.4e-77 293.9 299 68.6
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 2.4e-77 293.1 319 67.4
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.2e-76 290.8 164 86.0
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 2.0e-76 290.0 272 61.0
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 2.6e-76 289.7 287 65.2
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 1.0e-75 287.7 297 70.0
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 2.9e-75 286.2 193 74.6
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 1.4e-72 277.3 297 63.0
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 1.4e-72 277.3 299 63.9
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 1.4e-72 277.3 299 64.9
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 3.3e-71 272.7 224 66.5
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 4.3e-71 272.3 327 60.9
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 2.8e-70 269.6 301 54.8
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 4.8e-70 268.9 283 65.4
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 8.2e-70 268.1 293 60.1
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 2.4e-69 266.5 345 60.9
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 5.0e-67 258.8 189 70.4
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 4.2e-66 255.8 301 61.1
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 9.4e-66 254.6 299 67.2
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 4.7e-65 252.3 306 64.1
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 7.9e-65 251.5 307 59.3
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 1.8e-64 250.4 301 66.8
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 9.7e-63 244.6 300 62.0
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 8.2e-62 241.5 291 64.3
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 5.3e-61 238.8 298 61.1
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 7.7e-60 235.0 306 64.1
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 1.3e-59 234.2 288 66.7
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.2e-59 233.4 305 57.0
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 6.5e-59 231.9 298 57.7
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 3.2e-58 229.6 295 62.0
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 9.4e-58 228.0 287 59.2
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 1.2e-57 227.6 302 59.9
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 1.2e-57 227.6 302 59.9
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 3.0e-56 223.0 189 66.7
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 6.7e-56 221.9 302 50.0
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 8.8e-56 221.5 307 62.5
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 8.8e-56 221.5 303 55.8
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 7.5e-55 218.4 296 59.1
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 7.5e-55 218.4 172 66.3
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 1.7e-54 217.2 312 54.2
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 2.8e-54 216.5 314 53.8
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 3.7e-54 216.1 307 55.7
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 3.1e-53 213.0 272 63.6
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 1.6e-52 210.7 333 49.8
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 2.2e-51 206.8 289 43.6
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 2.2e-51 206.8 289 43.6
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 2.2e-51 206.8 195 58.5
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 1.6e-49 200.7 306 50.7
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 2.1e-49 200.3 289 46.7
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 2.1e-49 200.3 289 46.7
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 2.1e-49 200.3 289 46.7
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 1.5e-47 194.1 269 59.9
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 8.3e-46 188.3 137 70.8
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 1.1e-45 188.0 120 74.2
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 1.6e-44 184.1 289 46.7
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.3e-43 181.0 120 70.8
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 8.0e-41 171.8 176 54.5
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 5.2e-40 169.1 158 60.1
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 5.2e-32 142.5 101 71.3
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 2.2e-30 137.1 228 42.5
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 5.0e-27 125.9 165 75.2
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 4.3e-26 122.9 66 89.4
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 8.0e-25 118.6 136 50.0
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 1.2e-20 104.8 98 57.1
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 3.5e-20 103.2 97 57.7
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 3.5e-20 103.2 97 57.7
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 2.1e-17 94.0 60 78.3
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.5e-15 87.8 48 83.3
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 2.2e-14 84.0 55 72.7
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 1.1e-13 81.6 55 70.9
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 3.3e-10 70.1 130 51.5
MBI18_g10370_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.6e-09 67.8 60 70.0
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.1e-08 65.1 61 55.7
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 1.5e-07 61.2 101 40.6
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 7.6e-07 58.9 60 50.0
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 9.9e-07 58.5 105 38.1
SEGI_04448 Sequoiadendron giganteum HOM05D008111 ORTHO05D010192 1.7e-06 57.8 55 47.3
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 2.2e-06 57.4 29 82.8
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 2.2e-06 57.4 50 54.0
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 2.2e-06 57.4 50 54.0
Oeu054547.2 Olea europaea HOM05D005384 ORTHO05D006477 2.9e-06 57.0 57 45.6
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 3.8e-06 56.6 115 35.7
Lalb_Chr05g0228951 Lupinus albus HOM05D005384 ORTHO05D006477 3.8e-06 56.6 64 42.2
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 4.9e-06 56.2 123 34.1
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 4.9e-06 56.2 105 37.1
Lalb_Chr16g0391981 Lupinus albus HOM05D005384 ORTHO05D006477 4.9e-06 56.2 64 40.6
Potri.004G081800 Populus trichocarpa HOM05D005384 ORTHO05D006477 4.9e-06 56.2 62 43.5
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 6.4e-06 55.8 56 48.2
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 6.4e-06 55.8 114 36.0
Haze_14319 Corylus avellana HOM05D005384 ORTHO05D006477 6.4e-06 55.8 62 41.9
Potri.017G138500 Populus trichocarpa HOM05D005384 ORTHO05D006477 6.4e-06 55.8 62 45.2
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 6.4e-06 55.8 62 41.9
Sc22g0001400 Simmondsia chinensis HOM05D005384 ORTHO05D006477 6.4e-06 55.8 86 34.9
arahy.Tifrunner.gnm1.ann1.EB4ABC Arachis hypogaea HOM05D005384 ORTHO05D006477 8.4e-06 55.5 63 41.3
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 8.4e-06 55.5 56 48.2
arahy.Tifrunner.gnm1.ann1.R6E3N5 Arachis hypogaea HOM05D005384 ORTHO05D006477 8.4e-06 55.5 63 41.3
HanXRQChr14g0446421 Helianthus annuus HOM05D006753 ORTHO05D008521 8.4e-06 55.5 55 49.1
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 8.4e-06 55.5 64 39.1
PGR042G2720 Punica granatum HOM05D005384 ORTHO05D006477 8.4e-06 55.5 64 40.6
SEGI_12173 Sequoiadendron giganteum HOM05D008111 ORTHO05D010192 8.4e-06 55.5 54 46.3
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 8.4e-06 55.5 99 36.4


User provided reference genes

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