Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 3.2e-187 658.3 334 100.0
Aqoxy7G00564 Aquilegia oxysepala HOM05D006822 ORTHO05D008884 4.5e-32 142.9 299 37.1
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 1.4e-14 84.7 56 67.9
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.9e-14 84.3 56 69.6
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.9e-14 84.3 56 69.6
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.9e-14 84.3 56 69.6
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 3.2e-14 83.6 56 67.9
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 3.2e-14 83.6 56 66.1
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 3.2e-14 83.6 56 66.1
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 3.2e-14 83.6 56 66.1
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 3.2e-14 83.6 56 66.1
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 3.2e-14 83.6 56 66.1
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 3.2e-14 83.6 56 66.1
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 4.2e-14 83.2 56 67.9
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 4.2e-14 83.2 56 67.9
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 4.2e-14 83.2 56 66.1
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 5.5e-14 82.8 56 67.9
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 5.5e-14 82.8 56 67.9
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 5.5e-14 82.8 56 67.9
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 7.2e-14 82.4 56 66.1
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 7.2e-14 82.4 56 64.3
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 7.2e-14 82.4 56 64.3
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 9.3e-14 82.0 56 64.3
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 9.3e-14 82.0 56 64.3
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 9.3e-14 82.0 56 66.1
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 9.3e-14 82.0 56 64.3
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 9.3e-14 82.0 56 66.1
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 9.3e-14 82.0 56 64.3
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 9.3e-14 82.0 56 66.1
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 9.3e-14 82.0 67 55.2
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 1.2e-13 81.6 56 66.1
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 1.6e-13 81.3 56 64.3
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 1.6e-13 81.3 56 64.3
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 1.6e-13 81.3 56 64.3
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 1.6e-13 81.3 56 64.3
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 1.6e-13 81.3 56 64.3
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 2.1e-13 80.9 56 64.3
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 2.1e-13 80.9 56 64.3
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 2.1e-13 80.9 56 62.5
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 2.1e-13 80.9 56 62.5
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 2.1e-13 80.9 56 64.3
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 2.1e-13 80.9 56 64.3
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 2.1e-13 80.9 56 64.3
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 2.1e-13 80.9 56 66.1
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 2.1e-13 80.9 56 64.3
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 2.1e-13 80.9 56 64.3
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 2.1e-13 80.9 56 64.3
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 2.7e-13 80.5 56 64.3
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 2.7e-13 80.5 56 66.1
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 2.7e-13 80.5 56 64.3
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 2.7e-13 80.5 56 62.5
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 2.7e-13 80.5 56 62.5
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 3.6e-13 80.1 56 64.3
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 3.6e-13 80.1 56 62.5
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 3.6e-13 80.1 56 62.5
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 3.6e-13 80.1 67 56.7
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 3.6e-13 80.1 56 62.5
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 4.6e-13 79.7 56 62.5
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 4.6e-13 79.7 56 62.5
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 4.6e-13 79.7 56 64.3
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 4.6e-13 79.7 56 64.3
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 4.6e-13 79.7 56 64.3
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 4.6e-13 79.7 56 64.3
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 4.6e-13 79.7 56 64.3
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 4.6e-13 79.7 56 62.5
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 4.6e-13 79.7 52 67.3
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 4.6e-13 79.7 56 64.3
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 4.6e-13 79.7 56 62.5
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 4.6e-13 79.7 56 62.5
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 6.1e-13 79.3 56 64.3
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 6.1e-13 79.3 56 64.3
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 6.1e-13 79.3 56 62.5
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 6.1e-13 79.3 56 62.5
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 6.1e-13 79.3 56 60.7
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 6.1e-13 79.3 56 62.5
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 6.1e-13 79.3 56 62.5
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 6.1e-13 79.3 56 62.5
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 6.1e-13 79.3 56 62.5
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 6.1e-13 79.3 56 62.5
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 6.1e-13 79.3 56 62.5
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 6.1e-13 79.3 56 62.5
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 7.9e-13 79.0 56 60.7
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 7.9e-13 79.0 56 64.3
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 7.9e-13 79.0 56 64.3
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 7.9e-13 79.0 56 62.5
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 1.0e-12 78.6 56 62.5
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 1.0e-12 78.6 56 64.3
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 1.3e-12 78.2 56 62.5
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 1.3e-12 78.2 56 60.7
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 1.3e-12 78.2 56 62.5
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 1.8e-12 77.8 56 60.7
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 2.3e-12 77.4 56 60.7
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 2.3e-12 77.4 56 60.7
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 2.3e-12 77.4 56 62.5
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 2.3e-12 77.4 56 60.7
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 2.3e-12 77.4 56 60.7
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 2.3e-12 77.4 56 60.7
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 3.0e-12 77.0 56 60.7
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 3.9e-12 76.6 56 60.7
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 5.1e-12 76.3 56 60.7
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 5.1e-12 76.3 56 60.7
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 5.1e-12 76.3 56 60.7
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 5.1e-12 76.3 56 60.7
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 5.1e-12 76.3 56 60.7
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 5.1e-12 76.3 56 60.7
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 5.1e-12 76.3 56 60.7
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 5.1e-12 76.3 56 60.7
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 5.1e-12 76.3 56 58.9
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 5.1e-12 76.3 49 65.3
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 6.7e-12 75.9 56 60.7
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 6.7e-12 75.9 56 60.7
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 6.7e-12 75.9 56 60.7
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 6.7e-12 75.9 56 60.7
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 6.7e-12 75.9 56 60.7
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 6.7e-12 75.9 56 60.7
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 6.7e-12 75.9 56 60.7
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 6.7e-12 75.9 56 62.5
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 8.7e-12 75.5 56 62.5
Rhsim07G0025500 Rhododendron simsii HOM05D006822 ORTHO05D008884 8.7e-12 75.5 137 39.4
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 1.1e-11 75.1 56 60.7
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 1.3e-10 71.6 45 68.9
COL.COLO4_12575 Corchorus olitorius HOM05D006822 ORTHO05D008884 4.8e-10 69.7 140 36.4
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 6.3e-10 69.3 43 67.4
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 8.2e-10 68.9 56 53.6
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 1.8e-09 67.8 120 39.2
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 2.4e-09 67.4 49 61.2
vmacro13383 Vaccinium macrocarpon HOM05D006822 ORTHO05D008884 2.4e-09 67.4 140 40.7
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 3.1e-09 67.0 56 55.4
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 3.1e-09 67.0 56 53.6
GSVIVG01027532001 Vitis vinifera HOM05D006822 ORTHO05D008884 4.1e-09 66.6 138 35.5
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 1.2e-08 65.1 66 51.5
TAR375G1023 Trochodendron aralioides HOM05D006822 ORTHO05D008884 4.5e-08 63.2 141 36.2
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 5.9e-08 62.8 86 41.9
Nn1g01174 Nelumbo nucifera HOM05D006822 ORTHO05D008884 7.7e-08 62.4 182 30.8
Nitab4.5_0004320g0040 Nicotiana tabacum HOM05D006822 ORTHO05D008884 7.7e-08 62.4 232 29.7
unitig_22.g5376 Utricularia gibba HOM05D006822 ORTHO05D008884 1.0e-07 62.0 171 32.2
Gorai.004G041400 Gossypium raimondii HOM05D006822 ORTHO05D008884 1.3e-07 61.6 135 34.1
CAN.G170.5 Capsicum annuum HOM05D006822 ORTHO05D008884 1.7e-07 61.2 234 29.1
Peaxi162Scf00021g01312 Petunia axillaris HOM05D006822 ORTHO05D008884 1.7e-07 61.2 212 31.1
PGR031G1001 Punica granatum HOM05D006822 ORTHO05D008884 1.7e-07 61.2 109 37.6
Gohir.A08G031700 Gossypium hirsutum HOM05D006822 ORTHO05D008884 2.2e-07 60.8 136 34.6
Hund27354 Selenicereus undatus HOM05D006822 ORTHO05D008884 2.2e-07 60.8 150 36.0
CiPaw.01G260400 Carya illinoinensis HOM05D006822 ORTHO05D008884 2.9e-07 60.5 137 34.3
MBI04_g46545_MAGBIO Magnolia biondii HOM05D006822 ORTHO05D008884 2.9e-07 60.5 141 36.2
Gohir.D08G042800 Gossypium hirsutum HOM05D006822 ORTHO05D008884 3.8e-07 60.1 135 34.1
Nitab4.5_0013912g0010 Nicotiana tabacum HOM05D006822 ORTHO05D008884 3.8e-07 60.1 141 36.9
Haze_16833 Corylus avellana HOM05D006822 ORTHO05D008884 8.5e-07 58.9 115 35.7
Migut.B01651 Erythranthe guttata HOM05D006822 ORTHO05D008884 1.1e-06 58.5 134 34.3
Phvul.008G075100 Phaseolus vulgaris HOM05D006822 ORTHO05D008884 1.4e-06 58.2 115 33.0
arahy.Tifrunner.gnm1.ann1.485MU0 Arachis hypogaea HOM05D006822 ORTHO05D008884 1.9e-06 57.8 124 34.7
Ca_07832_v3 Cicer arietinum L. HOM05D006822 ORTHO05D008884 1.9e-06 57.8 117 33.3
Psat3g115280 Pisum sativum HOM05D006822 ORTHO05D008884 2.5e-06 57.4 120 32.5
ClCG05G002100 Citrullus lanatus HOM05D006822 ORTHO05D008884 3.2e-06 57.0 230 30.0
Medtr7g075185 Medicago truncatula HOM05D006822 ORTHO05D008884 3.2e-06 57.0 115 33.9
Cc02_g36520 Coffea canephora HOM05D006822 ORTHO05D008884 4.2e-06 56.6 238 29.0
Sed0020963 Sechium edule HOM05D006822 ORTHO05D008884 5.5e-06 56.2 134 35.1
SGA_v2.0_scaffold95G28889 Striga asiatica HOM05D006822 ORTHO05D008884 5.5e-06 56.2 114 34.2
Medtr7g075170 Medicago truncatula HOM05D006822 ORTHO05D008884 9.4e-06 55.5 119 33.6


User provided reference genes

Program Settings