Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 2086.2 1079 100.0
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1567.0 1097 74.7
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1530.8 1082 74.0
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1528.5 1082 73.9
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1492.6 1097 72.7
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1465.7 1094 71.1
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1461.4 1091 71.5
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1456.0 1124 69.5
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1446.4 1095 69.9
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1439.1 1088 70.6
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1438.7 1089 70.4
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1437.2 1097 69.2
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1431.0 1082 70.4
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1430.2 1086 70.0
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1427.5 1089 69.7
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1424.5 1095 69.2
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1423.7 1105 69.4
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1415.2 1084 69.6
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1414.8 1085 69.3
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1414.4 1082 70.3
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1409.0 1086 68.5
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1403.3 1086 68.8
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1401.7 1091 67.3
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1401.7 1089 68.8
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1399.4 1091 67.6
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1394.8 1094 67.2
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1392.5 1079 68.8
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1390.9 1106 68.0
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1387.1 1085 67.9
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1382.9 1092 67.0
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1379.0 1089 66.1
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1377.1 1091 67.8
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1375.9 1086 67.1
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1374.4 1093 67.7
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1372.5 1087 67.6
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1370.1 1093 65.7
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1368.2 1099 66.8
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1365.5 1093 66.3
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1364.0 1087 66.9
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1363.2 1109 67.1
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1360.5 1086 65.7
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1359.4 1089 66.1
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1355.1 1090 65.5
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1352.8 1132 65.5
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1350.5 1085 65.9
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1348.2 1085 66.1
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1335.1 1088 65.4
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1333.9 1095 65.7
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1333.5 1100 65.7
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1326.6 1087 65.8
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1324.7 1097 64.4
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1317.4 1086 65.6
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1315.1 1134 64.3
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1312.7 1093 64.9
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1304.3 1093 65.0
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1303.9 1094 65.1
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1303.1 1093 65.0
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1300.8 1097 65.2
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1291.2 1098 63.0
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1280.8 1116 61.9
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1280.0 1064 64.7
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1278.1 1090 62.9
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1272.7 1101 62.6
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1270.0 1096 63.0
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1268.8 1092 62.5
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1266.9 1089 62.9
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1266.1 1093 63.1
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1260.7 1093 62.0
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1259.2 1098 61.7
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1258.8 1087 62.5
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1253.8 1100 61.6
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1253.8 1097 62.2
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1253.0 1095 62.4
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1252.7 1095 62.0
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1252.3 1100 61.6
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1248.8 1099 61.1
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1245.3 1105 61.6
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1238.0 1105 60.8
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1234.9 1105 61.2
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1231.1 1113 59.6
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1210.7 1109 60.0
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1208.4 1111 59.9
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1207.2 1095 60.5
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1203.7 1110 59.6
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 0.0e+00 1200.3 1114 60.5
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1189.9 1083 59.4
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1179.9 1092 59.0
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1159.8 1270 53.8
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1144.8 947 64.2
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1143.3 943 64.7
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1135.9 1089 58.3
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 0.0e+00 1119.8 1329 51.8
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1110.9 975 64.1
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 0.0e+00 1080.1 1068 56.5
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 3.7e-311 1071.6 1097 55.9
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 8.1e-309 1063.9 953 60.4
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 2.1e-301 1039.3 931 62.0
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 1.9e-297 1026.2 923 61.9
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 4.1e-297 1025.0 973 59.8
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 9.3e-281 970.7 957 56.4
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 7.4e-278 961.1 1045 54.4
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 5.6e-270 934.9 863 61.3
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.1e-233 814.3 1126 44.0
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 1.0e-231 807.7 1149 42.4
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.5e-230 803.9 1125 43.7
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 9.7e-230 801.2 1128 41.8
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 1.5e-225 787.3 1106 42.1
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 1.2e-224 784.3 958 50.9
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 2.7e-224 783.1 701 60.2
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 1.2e-222 777.7 809 56.6
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 1.1e-217 761.1 907 52.4
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 1.4e-215 754.2 750 57.9
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 1.8e-207 727.2 529 71.6
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 5.0e-202 709.1 906 48.7
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 6.4e-197 692.2 1012 41.1
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.1e-196 691.4 516 68.6
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 3.4e-182 643.3 649 58.6
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 2.4e-180 637.1 523 65.0
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 1.5e-161 574.7 517 59.8
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 3.8e-149 533.5 384 72.1
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 1.6e-147 528.1 370 73.8
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 1.1e-140 505.4 401 67.3
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 3.8e-133 480.3 496 56.5
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.1e-116 425.6 317 69.7
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 8.3e-112 409.5 675 41.8
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 1.6e-107 395.2 227 84.6
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 7.2e-100 369.8 818 33.6
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 5.4e-95 353.6 317 59.0
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 2.8e-91 341.3 351 53.0
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 2.9e-88 331.3 185 83.8
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.1e-74 286.2 385 48.1
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 8.4e-72 276.6 227 67.0
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 9.2e-71 273.1 556 36.9
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 3.6e-67 261.2 140 91.4
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 5.8e-65 253.8 140 90.7
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 1.3e-64 252.7 190 70.0
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 3.2e-63 248.1 143 84.6
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 4.2e-63 247.7 194 61.3
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 3.9e-61 241.1 245 53.5
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 1.9e-60 238.8 1281 21.1
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 3.1e-58 231.5 257 51.0
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 7.9e-54 216.9 538 33.5
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 3.3e-52 211.5 119 88.2
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 3.6e-51 208.0 116 88.8
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 6.9e-50 203.8 117 85.5
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 1.1e-44 186.4 637 26.1
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 4.8e-43 181.0 140 69.3
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 5.3e-42 177.6 146 63.0
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.4e-39 169.5 119 73.9
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.4e-39 169.5 119 73.9
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 4.3e-36 157.9 184 54.3
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 1.3e-35 156.4 83 89.2
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 1.1e-34 153.3 82 87.8
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 5.9e-33 147.5 112 69.6
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 1.0e-32 146.7 175 49.7
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 1.7e-32 146.0 82 82.9
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 4.6e-30 137.9 113 61.9
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 4.6e-30 137.9 87 81.6
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 4.3e-28 131.3 153 47.7
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 5.7e-28 131.0 117 57.3
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 1.6e-27 129.4 134 52.2
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 3.7e-27 128.3 87 77.0
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.8e-26 125.9 161 50.3
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 2.4e-26 125.6 88 75.0
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 2.6e-25 122.1 1104 21.1
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 1.3e-24 119.8 115 53.0
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 5.0e-24 117.9 87 70.1
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 3.0e-21 108.6 102 58.8
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 9.7e-20 103.6 85 60.0
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 8.2e-19 100.5 91 56.0
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 3.1e-18 98.6 93 55.9
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 4.5e-17 94.7 87 50.6
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 3.1e-10 72.0 76 53.9
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.0e-08 67.0 43 72.1
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 6.5e-08 64.3 59 55.9
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 1.6e-06 59.7 45 60.0


User provided reference genes

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