Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 3820.0 1996 100.0
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 2392.1 2018 63.1
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 2258.4 2007 60.7
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 2248.4 2007 60.6
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2133.6 2022 57.6
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2016.1 2021 55.2
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 2000.3 2045 53.6
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 1978.8 2039 54.4
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 1976.8 1997 54.8
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 1959.5 1999 53.5
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 1957.2 2083 52.8
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 1952.9 2009 53.2
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 1949.5 1999 53.6
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 1944.9 2004 53.5
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 1943.3 2005 52.9
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 1941.8 2004 53.2
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 1941.8 1988 53.3
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 1931.0 1991 53.1
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 1929.8 2037 53.5
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1911.7 2001 52.9
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 1900.6 2002 52.8
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 1900.6 2035 52.8
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1892.5 2003 52.0
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 1890.9 2000 52.0
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1879.8 2002 51.8
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1872.4 1991 52.0
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 1848.6 2102 50.2
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 1839.7 2000 51.5
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1838.5 2013 51.3
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1814.3 2214 47.2
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 1813.5 2000 50.5
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 1803.9 2008 49.9
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 1788.1 2003 50.5
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 1775.4 2076 48.9
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 1768.1 2003 50.1
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 1764.2 2009 49.7
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1758.8 2011 49.3
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 1757.3 1999 50.0
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 1756.5 2016 48.7
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1756.1 2000 48.9
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 1751.1 2003 49.7
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1748.8 1784 53.4
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1747.3 1998 48.9
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1745.7 2085 48.2
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 1740.7 2007 49.7
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 1724.1 2023 48.1
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 1723.4 2003 48.1
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 1720.3 2005 48.9
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 1719.9 2000 49.0
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1704.9 1998 48.0
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1700.6 2073 47.7
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 1697.2 2006 48.1
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1693.7 2132 46.5
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1684.8 1997 48.2
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 1683.3 2005 47.7
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1679.5 2015 47.0
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 1672.1 1998 47.4
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1668.7 1989 48.3
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1659.4 1998 47.0
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 1659.0 2004 47.3
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 1647.9 1997 47.1
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1638.2 2050 46.0
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1632.5 2010 46.9
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1631.7 2215 44.2
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1630.9 2013 46.7
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1626.3 2010 46.6
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 1625.1 2013 46.5
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1621.7 1980 46.9
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1614.7 2016 46.2
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1614.4 1995 47.6
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1580.8 1840 48.1
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 1571.6 2003 46.3
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1548.1 2041 44.9
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1523.1 1736 49.0
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1518.8 2000 44.8
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 1333.2 1904 43.0
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1245.0 1391 50.9
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1196.8 2322 37.0
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1187.2 1404 49.1
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1178.7 1504 46.4
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1156.4 1268 51.8
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1092.4 1390 47.5
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 1.3e-296 1024.2 2041 34.7
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 8.8e-293 1011.5 2077 32.5
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 1.5e-284 984.2 2090 33.0
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 9.1e-274 948.3 1245 44.4
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 4.5e-265 919.5 2090 30.7
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 2.8e-246 857.1 1225 42.4
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 2.2e-235 820.8 1094 43.7
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 7.1e-234 815.8 1328 38.3
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 3.9e-232 810.1 814 54.4
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 6.0e-225 786.2 1501 34.8
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 1.9e-215 754.6 1036 44.0
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 1.3e-214 751.9 619 63.7
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 2.4e-210 737.6 710 55.6
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 1.0e-203 715.7 672 57.3
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.8e-189 668.3 878 42.1
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 3.7e-174 617.5 757 46.2
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 1.8e-165 588.6 493 60.6
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 5.0e-163 580.5 749 46.1
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 6.1e-161 573.5 739 43.3
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 5.9e-156 557.0 742 43.7
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 2.8e-150 538.1 2193 24.5
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 1.6e-124 452.6 952 36.6
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 4.3e-122 444.5 529 48.2
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 9.2e-117 426.8 502 47.6
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 8.1e-113 413.7 658 38.3
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 5.2e-112 411.0 335 60.3
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.9e-109 402.5 753 36.1
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 8.1e-105 387.1 778 34.2
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 5.8e-103 380.9 416 51.7
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 3.7e-97 361.7 630 36.0
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 1.2e-92 346.7 618 37.7
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 2.3e-91 342.4 392 47.2
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.4e-72 280.0 203 68.0
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 2.8e-65 255.8 215 60.5
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 3.1e-56 225.7 477 30.6
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 3.5e-55 222.2 190 57.9
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 2.3e-51 209.5 209 55.5
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.8e-49 202.6 404 34.9
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.2e-39 170.6 332 38.9
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.0e-38 167.5 138 58.7
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 3.0e-35 156.0 179 48.6
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 7.0e-32 144.8 100 74.0
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.1e-29 137.5 153 49.7
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.0e-27 131.0 700 23.9
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 4.0e-27 129.0 149 48.3
MCO14G095 Micromonas commoda HOM05D004110 ORTHO05D004810 3.4e-26 125.9 522 25.7
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.7e-25 123.6 605 23.8
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 7.0e-24 118.2 72 69.4
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 3.5e-23 115.9 118 54.2
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.7e-22 113.6 151 45.0
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 5.2e-19 102.1 221 35.7
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 4.4e-18 99.0 127 44.1
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 9.8e-18 97.8 152 35.5
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 1.7e-17 97.1 187 35.8
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 8.3e-17 94.7 138 39.1
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 2.4e-16 93.2 139 39.6
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 3.2e-16 92.8 137 37.2
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 4.1e-16 92.4 113 48.7
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 1.6e-15 90.5 128 42.2
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 7.8e-15 88.2 86 50.0
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 1.3e-14 87.4 103 44.7
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.3e-14 87.4 89 52.8
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 1.7e-14 87.0 109 43.1
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 2.5e-13 83.2 110 44.5
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 1.2e-12 80.9 63 58.7
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 6.2e-12 78.6 52 69.2
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 1.1e-11 77.8 71 50.7
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 3.7e-09 69.3 79 43.0
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 1.4e-08 67.4 157 30.6
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 2.7e-07 63.2 180 28.9
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 2.7e-07 63.2 56 50.0
Sabra04G0113100 Salix brachista HOM05D004110 ORTHO05D004810 1.3e-06 60.8 106 37.7
CBR_g66117 Chara braunii HOM05D000019 ORTHO05D001702 3.9e-06 59.3 98 31.6
HPP92_005014 Vanilla planifolia HOM05D004110 ORTHO05D004810 3.9e-06 59.3 72 43.1
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 6.6e-06 58.5 80 41.2


User provided reference genes

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