Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G00212 Aquilegia oxysepala HOM05D000916 ORTHO05D009274 8.2e-88 327.0 165 100.0
Nn2g15166 Nelumbo nucifera HOM05D000916 ORTHO05D009274 1.7e-56 223.0 171 66.7
COL.COLO4_12325 Corchorus olitorius HOM05D000916 ORTHO05D003833 7.8e-54 214.2 169 64.5
AUR62023107 Chenopodium quinoa HOM05D000916 ORTHO05D009274 2.8e-51 205.7 169 59.2
Dinv07424 Davidia involucrata HOM05D000916 ORTHO05D009274 2.8e-51 205.7 174 62.1
Lsat_1_v5_gn_7_34400 Lactuca sativa HOM05D000916 ORTHO05D009274 2.8e-51 205.7 175 62.9
TAR636G3509 Trochodendron aralioides HOM05D000916 ORTHO05D009274 2.8e-51 205.7 168 61.9
Potri.001G259216 Populus trichocarpa HOM05D000916 ORTHO05D009274 8.9e-50 200.7 176 60.2
Potri.001G259900 Populus trichocarpa HOM05D000916 ORTHO05D009274 8.9e-50 200.7 176 60.2
PGR031G2328 Punica granatum HOM05D000916 ORTHO05D009274 3.4e-49 198.7 178 59.6
PSO170G4961 Papaver somniferum HOM05D000916 ORTHO05D009274 7.5e-49 197.6 159 61.6
RcHm_v2.0_Chr1g0318771 Rosa chinensis HOM05D000916 ORTHO05D009274 7.5e-49 197.6 175 61.1
FvH4_7g01930 Fragaria vesca HOM05D000916 ORTHO05D009274 2.9e-48 195.7 173 61.3
FAN06G1234 Fragaria x ananassa HOM05D000916 ORTHO05D009274 2.9e-48 195.7 173 61.3
Prupe.2G025000 Prunus persica HOM05D000916 ORTHO05D009274 2.9e-48 195.7 168 63.1
CiPaw.14G004300 Carya illinoinensis HOM05D000916 ORTHO05D009274 1.4e-47 193.4 174 58.6
FAN03G1280 Fragaria x ananassa HOM05D000916 ORTHO05D009274 1.4e-47 193.4 173 60.7
Actinidia06285 Actinidia chinensis HOM05D000916 ORTHO05D009274 1.9e-47 193.0 176 57.4
Atru.chr11.2553 Acer truncatum HOM05D000916 ORTHO05D009274 2.4e-47 192.6 175 58.9
TWI53G0499 Tripterygium wilfordii HOM05D000916 ORTHO05D009274 2.4e-47 192.6 173 59.0
Manes.07G012200 Manihot esculenta HOM05D000916 ORTHO05D009274 3.2e-47 192.2 177 58.2
PSO210G2598 Papaver somniferum HOM05D000916 ORTHO05D009274 4.1e-47 191.8 161 60.2
HanXRQChr15g0480451 Helianthus annuus HOM05D000916 ORTHO05D009274 9.2e-47 190.7 165 60.0
EL10Ac2g04385 Beta vulgaris HOM05D000916 ORTHO05D009274 1.6e-46 189.9 172 57.6
TAR636G0367 Trochodendron aralioides HOM05D000916 ORTHO05D009274 1.6e-46 189.9 146 63.0
Eucgr.G03277 Eucalyptus grandis HOM05D000916 ORTHO05D009274 2.1e-46 189.5 189 55.0
Potri.001G260600 Populus trichocarpa HOM05D000916 ORTHO05D009274 2.7e-46 189.1 175 57.7
GSVIVG01001443001 Vitis vinifera HOM05D000916 ORTHO05D009274 6.0e-46 188.0 127 70.1
Cc04_g14680 Coffea canephora HOM05D000916 ORTHO05D009274 1.7e-45 186.4 202 50.5
MELO3C024009.2 Cucumis melo HOM05D000916 ORTHO05D009274 3.9e-45 185.3 170 55.9
Lj9P642T24 Lonicera japonica HOM05D000916 ORTHO05D009274 8.6e-45 184.1 126 65.9
Gorai.004G067400 Gossypium raimondii HOM05D000916 ORTHO05D009274 1.1e-44 183.7 175 56.6
CSS0046245 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D009274 1.5e-44 183.3 177 55.4
CsaV3_3G031830 Cucumis sativus L. HOM05D000916 ORTHO05D009274 2.5e-44 182.6 173 55.5
arahy.Tifrunner.gnm1.ann1.W0KZJE Arachis hypogaea HOM05D000916 ORTHO05D009274 3.3e-44 182.2 168 57.7
Oeu049471.1 Olea europaea HOM05D000916 ORTHO05D009274 4.3e-44 181.8 177 56.5
Nitab4.5_0002888g0050 Nicotiana tabacum HOM05D000916 ORTHO05D009274 7.3e-44 181.0 142 62.0
Sc11g0009010 Simmondsia chinensis HOM05D000916 ORTHO05D009274 7.3e-44 181.0 168 55.4
Lj3g0014758 Lotus japonicus HOM05D000916 ORTHO05D009274 9.5e-44 180.6 163 58.9
Gohir.D08G065100 Gossypium hirsutum HOM05D000916 ORTHO05D009274 1.2e-43 180.3 173 55.5
Migut.N01806 Erythranthe guttata HOM05D000916 ORTHO05D009274 2.1e-43 179.5 188 52.1
Rhsim07G0060800 Rhododendron simsii HOM05D000916 ORTHO05D009274 3.6e-43 178.7 206 50.5
ClCG10G012070 Citrullus lanatus HOM05D000916 ORTHO05D009274 4.7e-43 178.3 168 56.0
Rhsim07G0060200 Rhododendron simsii HOM05D000916 ORTHO05D009274 6.2e-43 177.9 183 53.6
DCAR_022368 Daucus carota HOM05D000916 ORTHO05D009274 8.1e-43 177.6 170 55.3
Medtr0003s0480 Medicago truncatula HOM05D000916 ORTHO05D009274 8.1e-43 177.6 167 56.9
MSTRG.5047 Avicennia marina HOM05D000916 ORTHO05D009274 1.1e-42 177.2 186 53.2
Peaxi162Scf01108g00212 Petunia axillaris HOM05D000916 ORTHO05D009274 1.1e-42 177.2 142 62.0
Solyc01g088030.4 Solanum lycopersicum HOM05D000916 ORTHO05D009274 1.1e-42 177.2 198 51.0
Sopen01g034920 Solanum pennellii HOM05D000916 ORTHO05D009274 1.4e-42 176.8 143 62.2
Sed0025824 Sechium edule HOM05D000916 ORTHO05D009274 1.8e-42 176.4 170 55.9
Cpa.g.sc197.27 Carica papaya HOM05D000916 ORTHO05D009274 3.1e-42 175.6 175 55.4
THA.LOC104826696 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 5.2e-42 174.9 178 53.4
THA.LOC104826705 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 5.2e-42 174.9 178 53.4
Aa31LG9G13290 Aethionema arabicum HOM05D000916 ORTHO05D009274 1.2e-41 173.7 175 53.1
Carub.0008s0547 Capsella rubella HOM05D000916 ORTHO05D009274 1.2e-41 173.7 177 53.1
vmacro13705 Vaccinium macrocarpon HOM05D000916 ORTHO05D009274 1.2e-41 173.7 227 45.8
VMungo1127G0561 Vigna mungo HOM05D000916 ORTHO05D009274 1.2e-41 173.7 168 54.2
Ciclev10032919m.g Citrus clementina HOM05D000916 ORTHO05D009274 1.5e-41 173.3 125 66.4
Psat0s488g0040 Pisum sativum HOM05D000916 ORTHO05D009274 1.5e-41 173.3 166 54.8
CAN.G410.4 Capsicum annuum HOM05D000916 ORTHO05D009274 2.6e-41 172.6 158 55.1
A02p27690 Brassica napus HOM05D000916 ORTHO05D009274 3.4e-41 172.2 171 53.8
BraA02t07808Z Brassica rapa HOM05D000916 ORTHO05D009274 3.4e-41 172.2 171 53.8
PGSC0003DMG400006832 Solanum tuberosum HOM05D000916 ORTHO05D009274 7.6e-41 171.0 147 59.9
FAN03G2260 Fragaria x ananassa HOM05D000916 ORTHO05D009274 9.9e-41 170.6 165 58.2
Sp2g08020 Schrenkiella parvula HOM05D000916 ORTHO05D009274 2.2e-40 169.5 156 53.2
AT5G43210 Arabidopsis thaliana HOM05D000916 ORTHO05D009274 1.1e-39 167.2 175 51.4
MBI11_g21817_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D009274 1.4e-39 166.8 131 61.8
Thhalv10003279m.g Eutrema salsugineum HOM05D000916 ORTHO05D009274 3.2e-39 165.6 173 52.6
Glyma.09G226100 Glycine max HOM05D000916 ORTHO05D009274 4.1e-39 165.2 175 50.9
BcaB07g30592 Brassica carinata HOM05D000916 ORTHO05D009274 9.2e-39 164.1 172 52.9
Phvul.011G013300 Phaseolus vulgaris HOM05D000916 ORTHO05D009274 9.2e-39 164.1 166 52.4
TAR636G0653 Trochodendron aralioides HOM05D000916 ORTHO05D009274 1.6e-38 163.3 132 63.6
THA.LOC104827433 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 2.1e-38 162.9 173 52.6
CANSAT80G0736 Cannabis sativa HOM05D000916 ORTHO05D009274 6.6e-37 157.9 149 59.1
SGA_v2.0_scaffold5G02941 Striga asiatica HOM05D000916 ORTHO05D009274 1.9e-36 156.4 211 44.5
AUR62009428 Chenopodium quinoa HOM05D000916 ORTHO05D009274 9.6e-36 154.1 103 66.0
Potri.001G260300 Populus trichocarpa HOM05D000916 ORTHO05D009274 6.2e-35 151.4 108 70.4
Duzib133G0774 Durio zibethinus HOM05D000916 ORTHO05D009274 4.0e-34 148.7 165 52.7
CDE11G0804 Ceratophyllum demersum HOM05D000916 ORTHO05D009274 6.9e-34 147.9 120 57.5
MD02G1299300 Malus domestica HOM05D000916 ORTHO05D009274 2.0e-33 146.4 98 68.4
ATR0782G182 Amborella trichopoda HOM05D000916 ORTHO05D009274 5.8e-33 144.8 167 50.3
Sabra16G0159300 Salix brachista HOM05D000916 ORTHO05D009274 8.4e-32 141.0 97 67.0
Hma1.2p1_0579F.1_g182540 Hydrangea macrophylla HOM05D000916 ORTHO05D009274 5.4e-31 138.3 88 72.7
Os11g0146550 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 2.1e-30 136.3 169 47.3
Zm00001eb405020 Zea mays HOM05D000916 ORTHO05D009274 1.0e-29 134.0 121 56.2
Gohir.A08G055800 Gossypium hirsutum HOM05D000916 ORTHO05D009274 2.5e-28 129.4 169 45.6
Cfa010832 Carpinus fangiana HOM05D000916 ORTHO05D009274 5.6e-28 128.3 105 63.8
Ah.16g100710 Amaranthus hybridus HOM05D000916 ORTHO05D009274 6.2e-27 124.8 160 45.0
RcHm_v2.0_Chr1g0318641 Rosa chinensis HOM05D000916 ORTHO05D009274 8.1e-27 124.4 117 61.5
Lalb_Chr03g0024151 Lupinus albus HOM05D000916 ORTHO05D009274 4.0e-26 122.1 101 57.4
FAN01G3008 Fragaria x ananassa HOM05D000916 ORTHO05D009274 2.0e-25 119.8 110 62.7
AL8G17370 Arabidopsis lyrata HOM05D000916 ORTHO05D009274 1.7e-24 116.7 104 58.7
SEGI_20425 Sequoiadendron giganteum HOM05D000916 ORTHO05D009274 3.2e-23 112.5 84 66.7
Haze_03122 Corylus avellana HOM05D000916 ORTHO05D009274 7.4e-20 101.3 93 62.4
Mapoly0059s0058 Marchantia polymorpha HOM05D000916 ORTHO05D009274 2.1e-19 99.8 120 40.0
Atru.chr11.2549 Acer truncatum HOM05D000916 ORTHO05D009274 8.4e-16 87.8 55 69.1
Os12g0143300 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 8.4e-16 87.8 109 47.7
Nitab4.5_0006695g0040 Nicotiana tabacum HOM05D000916 ORTHO05D009274 2.1e-14 83.2 138 39.1
AagrBONN_evm.TU.Sc2ySwM_117.2287 Anthoceros agrestis HOM05D000916 ORTHO05D009274 3.5e-14 82.4 122 41.0
RcHm_v2.0_Chr1g0318631 Rosa chinensis HOM05D000916 ORTHO05D009274 7.9e-14 81.3 69 55.1
AagrBONN_evm.TU.Sc2ySwM_117.2289 Anthoceros agrestis HOM05D000916 ORTHO05D009274 1.3e-13 80.5 94 43.6
Cfa023829 Carpinus fangiana HOM05D002376 ORTHO05D004654 5.5e-07 58.5 81 40.7
CBR_g31178 Chara braunii HOM05D002376 ORTHO05D004654 5.5e-07 58.5 63 39.7
MD02G1299100 Malus domestica HOM05D000916 ORTHO05D009274 9.3e-07 57.8 37 75.7
DCAR_004798 Daucus carota HOM05D002376 ORTHO05D004654 1.6e-06 57.0 106 30.2
AagrBONN_evm.TU.Sc2ySwM_369.511 Anthoceros agrestis HOM05D002376 ORTHO05D004654 3.5e-06 55.8 99 31.3
Cre07.g351500 Chlamydomonas reinhardtii HOM05D002376 ORTHO05D004654 3.5e-06 55.8 75 37.3
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 3.5e-06 55.8 82 35.4
PRCOL_00003986 Prasinoderma coloniale HOM05D000916 ORTHO05D009274 6.0e-06 55.1 82 39.0
unitig_747.g21450 Utricularia gibba HOM05D002376 ORTHO05D004654 6.0e-06 55.1 82 34.1
Os07g0230500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D004654 7.9e-06 54.7 85 31.8


User provided reference genes

Program Settings