Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 6.1e-100 367.5 184 100.0
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 4.9e-97 357.8 178 100.0
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 6.0e-63 244.6 181 67.4
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 6.9e-59 231.1 181 63.5
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.7e-57 226.5 181 59.7
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.6e-55 219.9 178 59.6
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 5.1e-54 214.9 178 56.7
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 8.7e-54 214.2 179 57.5
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.1e-53 213.8 179 58.1
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.5e-53 213.4 179 58.1
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 1.5e-53 213.4 179 57.5
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.9e-53 213.0 177 58.2
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 3.3e-53 212.2 178 59.0
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 4.3e-53 211.8 179 58.7
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 9.6e-53 210.7 178 56.2
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 1.3e-52 210.3 180 57.2
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 2.8e-52 209.1 179 59.8
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 3.6e-52 208.8 178 55.6
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 4.8e-52 208.4 177 57.1
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.2e-52 208.0 173 59.5
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 6.2e-52 208.0 178 57.3
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 1.4e-51 206.8 178 57.9
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 1.4e-51 206.8 177 55.9
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 2.4e-51 206.1 178 57.3
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 3.1e-51 205.7 178 54.5
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 4.0e-51 205.3 178 55.6
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 5.3e-51 204.9 177 58.2
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 5.3e-51 204.9 178 56.7
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 6.9e-51 204.5 179 54.7
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 9.0e-51 204.1 178 55.1
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 9.0e-51 204.1 174 55.2
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 9.0e-51 204.1 179 54.7
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 9.0e-51 204.1 180 57.2
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.5e-50 203.4 175 57.7
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 2.6e-50 202.6 178 53.4
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 2.6e-50 202.6 179 56.4
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 3.4e-50 202.2 180 56.7
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 3.4e-50 202.2 174 58.0
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 1.7e-49 199.9 179 52.0
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 2.9e-49 199.1 177 55.4
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 2.9e-49 199.1 178 53.9
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.8e-49 198.7 178 55.1
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 6.4e-49 198.0 179 53.1
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.1e-48 197.2 179 53.6
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 1.1e-48 197.2 179 52.0
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.1e-48 197.2 179 52.0
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 4.2e-48 195.3 174 56.3
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 5.4e-48 194.9 178 56.2
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 7.1e-48 194.5 171 54.4
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 9.3e-48 194.1 178 55.1
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 1.6e-47 193.4 178 53.9
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 1.6e-47 193.4 179 52.5
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 1.6e-47 193.4 178 51.7
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 2.1e-47 193.0 179 52.5
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 2.7e-47 192.6 177 54.2
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 2.7e-47 192.6 180 52.2
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 3.5e-47 192.2 179 53.6
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 7.9e-47 191.0 179 49.2
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 7.9e-47 191.0 179 53.1
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 7.9e-47 191.0 172 53.5
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 1.0e-46 190.7 179 53.6
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 1.0e-46 190.7 178 52.8
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.0e-46 190.7 179 52.0
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 1.3e-46 190.3 179 49.2
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 1.3e-46 190.3 175 53.1
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 2.3e-46 189.5 225 45.3
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 3.0e-46 189.1 178 54.5
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 6.7e-46 188.0 179 52.0
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 8.7e-46 187.6 175 52.6
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 8.7e-46 187.6 179 49.7
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 8.7e-46 187.6 179 49.7
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 1.1e-45 187.2 179 52.0
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.5e-45 186.8 179 51.4
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 2.5e-45 186.0 179 50.8
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 2.5e-45 186.0 182 50.5
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 3.3e-45 185.7 179 49.2
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 5.6e-45 184.9 178 53.4
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 9.6e-45 184.1 173 53.2
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 9.6e-45 184.1 172 50.6
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 9.6e-45 184.1 179 50.8
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 9.6e-45 184.1 179 50.8
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 9.6e-45 184.1 179 53.1
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 1.3e-44 183.7 179 49.2
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 1.6e-44 183.3 175 52.6
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.6e-44 183.3 173 53.2
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 2.1e-44 183.0 176 51.1
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 2.8e-44 182.6 179 52.0
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 6.2e-44 181.4 179 49.2
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 1.1e-43 180.6 179 48.0
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.1e-43 180.6 172 49.4
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.4e-43 180.3 180 50.0
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.4e-43 180.3 182 48.9
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 3.1e-43 179.1 181 51.9
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 3.1e-43 179.1 178 51.1
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 4.0e-43 178.7 179 48.0
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 4.0e-43 178.7 177 53.1
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.9e-43 177.9 174 48.9
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 6.9e-43 177.9 144 59.0
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 6.9e-43 177.9 173 54.9
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 9.0e-43 177.6 178 51.1
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 9.0e-43 177.6 178 51.1
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 1.2e-42 177.2 180 47.2
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 1.5e-42 176.8 179 50.3
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.0e-42 176.4 174 51.7
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 2.0e-42 176.4 174 51.1
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.6e-42 176.0 174 51.7
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 2.6e-42 176.0 174 51.7
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 4.5e-42 175.3 179 47.5
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 7.6e-42 174.5 176 50.6
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 1.3e-41 173.7 177 49.2
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 1.7e-41 173.3 180 47.2
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.9e-41 172.6 179 49.7
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 4.9e-41 171.8 178 46.6
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 4.9e-41 171.8 181 49.2
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 6.5e-41 171.4 180 49.4
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 8.4e-41 171.0 180 45.6
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 8.4e-41 171.0 175 49.7
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 1.1e-40 170.6 174 46.0
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 1.1e-40 170.6 173 50.3
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 1.4e-40 170.2 174 46.6
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 1.4e-40 170.2 174 46.6
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 1.4e-40 170.2 178 48.9
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 1.4e-40 170.2 176 48.9
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 1.4e-40 170.2 176 48.9
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 1.9e-40 169.9 174 46.0
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 3.2e-40 169.1 173 49.1
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 7.1e-40 167.9 166 50.0
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 7.9e-39 164.5 177 48.0
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.0e-38 164.1 165 49.7
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 1.0e-38 164.1 175 48.6
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 1.0e-38 164.1 165 50.3
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.3e-38 163.7 173 47.4
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.8e-38 163.3 175 48.6
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 3.9e-38 162.2 155 51.6
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 5.1e-38 161.8 145 54.5
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 5.1e-38 161.8 180 47.2
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 5.1e-38 161.8 175 50.3
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.1e-37 160.6 124 62.1
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.5e-37 159.5 173 46.8
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 5.7e-37 158.3 181 48.1
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 8.2e-36 154.5 178 46.1
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 1.4e-35 153.7 124 55.6
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 1.8e-35 153.3 179 43.6
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.2e-34 150.6 175 44.6
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 5.8e-34 148.3 145 50.3
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 7.6e-34 147.9 173 45.1
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.7e-33 146.7 173 44.5
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 2.2e-33 146.4 175 44.6
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 3.8e-33 145.6 174 42.0
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 9.3e-32 141.0 164 45.1
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 1.6e-31 140.2 179 43.0
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 4.6e-31 138.7 182 42.3
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.0e-30 137.5 156 44.9
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.0e-30 136.0 177 41.2
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 5.1e-30 135.2 173 41.0
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 6.7e-30 134.8 179 41.9
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 2.5e-29 132.9 170 41.8
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 4.3e-29 132.1 135 46.7
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 5.3e-27 125.2 114 52.6
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 5.3e-27 125.2 174 43.1
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 4.5e-26 122.1 114 51.8
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.9e-25 119.4 155 43.2
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 5.7e-21 105.1 95 53.7
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.3e-20 101.7 178 38.8
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 1.0e-17 94.4 108 46.3
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 2.6e-13 79.7 201 28.4
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 2.6e-13 79.7 83 49.4
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 1.1e-11 74.3 72 51.4
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 3.1e-11 72.8 199 26.1
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 7.0e-11 71.6 149 33.6
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 9.1e-11 71.2 166 30.7
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.6e-10 70.5 176 32.4
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.5e-10 69.3 59 52.5
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.5e-08 63.2 87 42.5
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 7.2e-08 61.6 63 44.4
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 6.7e-06 55.1 94 40.4


User provided reference genes

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