Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy235s001 Aquilegia oxysepala HOM05D003597 ORTHO05D078876 3.5e-175 618.2 319 100.0
Aqoxy5G02474 Aquilegia oxysepala HOM05D003597 ORTHO05D004420 9.2e-19 98.6 55 89.1
MBI03_g11136_MAGBIO Magnolia biondii HOM05D003597 ORTHO05D004420 2.8e-15 87.0 55 78.2
ClCG03G009090 Citrullus lanatus HOM05D003597 ORTHO05D004420 6.2e-15 85.9 59 71.2
MELO3C022786.2 Cucumis melo HOM05D003597 ORTHO05D004420 6.2e-15 85.9 59 71.2
CsaV3_5G023530 Cucumis sativus L. HOM05D003597 ORTHO05D004420 6.2e-15 85.9 59 71.2
TAR197G0005 Trochodendron aralioides HOM05D003597 ORTHO05D004420 1.4e-14 84.7 55 78.2
PSO017G6492 Papaver somniferum HOM05D003597 ORTHO05D004420 2.3e-14 84.0 54 75.9
PSO170G0537 Papaver somniferum HOM05D003597 ORTHO05D004420 4.0e-14 83.2 53 77.4
Sed0005676 Sechium edule HOM05D003597 ORTHO05D004420 8.9e-14 82.0 59 67.8
Gohir.A01G187600 Gossypium hirsutum HOM05D003597 ORTHO05D004420 1.2e-13 81.6 55 72.7
Gohir.D01G182100 Gossypium hirsutum HOM05D003597 ORTHO05D004420 2.6e-13 80.5 55 70.9
Gorai.002G220300 Gossypium raimondii HOM05D003597 ORTHO05D004420 2.6e-13 80.5 55 70.9
Prupe.1G506100 Prunus persica HOM05D003597 ORTHO05D004420 4.4e-13 79.7 78 55.1
Haze_00525 Corylus avellana HOM05D003597 ORTHO05D004420 9.9e-13 78.6 60 63.3
QL12p035319 Quercus lobata HOM05D003597 ORTHO05D004420 1.7e-12 77.8 55 65.5
Thecc.08G116700 Theobroma cacao HOM05D003597 ORTHO05D004420 2.2e-12 77.4 55 69.1
ATR0121G011 Amborella trichopoda HOM05D003597 ORTHO05D004420 2.9e-12 77.0 55 69.1
GSVIVG01008944001 Vitis vinifera HOM05D003597 ORTHO05D004420 2.9e-12 77.0 55 70.9
Cpa.g.c31003 Carica papaya HOM05D003597 ORTHO05D004420 8.4e-12 75.5 59 67.8
MD08G1173200 Malus domestica HOM05D003597 ORTHO05D004420 1.4e-11 74.7 55 67.3
arahy.Tifrunner.gnm1.ann1.WJPD8A Arachis hypogaea HOM05D003597 ORTHO05D004420 1.9e-11 74.3 55 69.1
arahy.Tifrunner.gnm1.ann1.Y09WXD Arachis hypogaea HOM05D003597 ORTHO05D004420 1.9e-11 74.3 55 69.1
Cfa015958 Carpinus fangiana HOM05D003597 ORTHO05D004420 1.9e-11 74.3 55 65.5
MBI06_g01044_MAGBIO Magnolia biondii HOM05D003597 ORTHO05D004420 1.9e-11 74.3 55 69.1
COL.COLO4_03393 Corchorus olitorius HOM05D003597 ORTHO05D004420 2.4e-11 73.9 55 67.3
Glyma.06G108500 Glycine max HOM05D003597 ORTHO05D004420 5.4e-11 72.8 59 62.7
Atru.chr13.1317 Acer truncatum HOM05D003597 ORTHO05D004420 9.2e-11 72.0 55 63.6
Atru.chr13.1361 Acer truncatum HOM05D003597 ORTHO05D004420 9.2e-11 72.0 55 63.6
Duzib093G1782 Durio zibethinus HOM05D003597 ORTHO05D004420 9.2e-11 72.0 55 65.5
RcHm_v2.0_Chr7g0240911 Rosa chinensis HOM05D003597 ORTHO05D004420 9.2e-11 72.0 55 63.6
Duzib041G0227 Durio zibethinus HOM05D003597 ORTHO05D004420 1.2e-10 71.6 55 65.5
Phvul.009G025800 Phaseolus vulgaris HOM05D003597 ORTHO05D004420 1.2e-10 71.6 59 62.7
TWI12G1217 Tripterygium wilfordii HOM05D003597 ORTHO05D004420 2.1e-10 70.9 59 67.8
Lalb_Chr08g0241721 Lupinus albus HOM05D003597 ORTHO05D004420 2.7e-10 70.5 59 57.6
TWI36G0588 Tripterygium wilfordii HOM05D003597 ORTHO05D004420 3.5e-10 70.1 59 67.8
Medtr3g073320 Medicago truncatula HOM05D003597 ORTHO05D004420 7.8e-10 68.9 59 62.7
Potri.002G089400 Populus trichocarpa HOM05D003597 ORTHO05D004420 7.8e-10 68.9 59 64.4
TPR.G32944 Trifolium pratense HOM05D003597 ORTHO05D004420 7.8e-10 68.9 59 61.0
TWI56G1037 Tripterygium wilfordii HOM05D003597 ORTHO05D004420 7.8e-10 68.9 59 66.1
Ca_25762_v3 Cicer arietinum L. HOM05D003597 ORTHO05D004420 1.3e-09 68.2 59 61.0
FvH4_5g38940 Fragaria vesca HOM05D003597 ORTHO05D004420 1.3e-09 68.2 55 58.2
FAN18G1206 Fragaria x ananassa HOM05D003597 ORTHO05D004420 1.3e-09 68.2 55 58.2
VMungo1309G0254 Vigna mungo HOM05D003597 ORTHO05D004420 1.7e-09 67.8 55 63.6
Aqoxy7G00539 Aquilegia oxysepala HOM05D000921 ORTHO05D002852 2.3e-09 67.4 70 57.1
CSS0024515 Camellia sinensis var. sinensis HOM05D003597 ORTHO05D004420 2.3e-09 67.4 55 63.6
Nn5g27956 Nelumbo nucifera HOM05D003597 ORTHO05D004420 2.3e-09 67.4 54 68.5
Sabra05G0129300 Salix brachista HOM05D003597 ORTHO05D004420 2.3e-09 67.4 59 61.0
CANSAT25G1161 Cannabis sativa HOM05D003597 ORTHO05D004420 3.0e-09 67.0 55 63.6
Lj1g0013609 Lotus japonicus HOM05D003597 ORTHO05D004420 3.0e-09 67.0 55 61.8
FAN13G2877 Fragaria x ananassa HOM05D003597 ORTHO05D004420 3.9e-09 66.6 55 56.4
Potri.005G171800 Populus trichocarpa HOM05D003597 ORTHO05D004420 3.9e-09 66.6 59 61.0
SGA_v2.0_scaffold24G10505 Striga asiatica HOM05D003597 ORTHO05D004420 3.9e-09 66.6 79 50.6
Manes.18G072800 Manihot esculenta HOM05D003597 ORTHO05D004420 6.6e-09 65.9 59 64.4
DCAR_025120 Daucus carota HOM05D000921 ORTHO05D002852 1.1e-08 65.1 75 52.0
Glyma.04G253800 Glycine max HOM05D003597 ORTHO05D004420 1.5e-08 64.7 59 59.3
Manes.02G158666 Manihot esculenta HOM05D003597 ORTHO05D004420 1.5e-08 64.7 59 59.3
Oeu003495.3 Olea europaea HOM05D000921 ORTHO05D002852 1.5e-08 64.7 71 52.1
Aa31LG4G7900 Aethionema arabicum HOM05D003597 ORTHO05D004420 1.9e-08 64.3 55 61.8
Ciclev10000027m.g Citrus clementina HOM05D003597 ORTHO05D004420 1.9e-08 64.3 96 44.8
Gohir.D06G041800 Gossypium hirsutum HOM05D003597 ORTHO05D004420 1.9e-08 64.3 55 60.0
Gorai.010G047000 Gossypium raimondii HOM05D003597 ORTHO05D004420 1.9e-08 64.3 55 60.0
FAN04G0001 Fragaria x ananassa HOM05D003597 ORTHO05D004420 2.5e-08 63.9 55 54.5
Hund27061 Selenicereus undatus HOM05D003597 ORTHO05D004420 2.5e-08 63.9 55 58.2
Actinidia23041 Actinidia chinensis HOM05D003597 ORTHO05D004420 3.3e-08 63.5 55 65.5
Dinv32396 Davidia involucrata HOM05D000921 ORTHO05D002852 4.3e-08 63.2 62 59.7
unitig_0.g2128 Utricularia gibba HOM05D003597 ORTHO05D004420 4.3e-08 63.2 55 60.0
Actinidia09569 Actinidia chinensis HOM05D000921 ORTHO05D002852 5.6e-08 62.8 73 50.7
CiPaw.05G229100 Carya illinoinensis HOM05D003597 ORTHO05D004420 7.3e-08 62.4 45 68.9
CARHR071300 Cardamine hirsuta HOM05D003597 ORTHO05D004420 9.6e-08 62.0 55 60.0
Gohir.A06G040800 Gossypium hirsutum HOM05D003597 ORTHO05D004420 9.6e-08 62.0 55 58.2
Sabra02G0070400 Salix brachista HOM05D003597 ORTHO05D004420 9.6e-08 62.0 98 43.9
Haze_16736 Corylus avellana HOM05D000921 ORTHO05D002852 1.2e-07 61.6 63 57.1
Eucgr.E01352 Eucalyptus grandis HOM05D000921 ORTHO05D002852 1.2e-07 61.6 71 50.7
THA.LOC104800176 Tarenaya hassleriana HOM05D003597 ORTHO05D004420 1.6e-07 61.2 55 60.0
BraA07t31831Z Brassica rapa HOM05D003597 ORTHO05D004420 2.1e-07 60.8 55 61.8
CiPaw.02G165500 Carya illinoinensis HOM05D000921 ORTHO05D002852 2.1e-07 60.8 64 56.2
Manes.05G043300 Manihot esculenta HOM05D000921 ORTHO05D002852 2.1e-07 60.8 71 53.5
SGA_v2.0_scaffold118G32437 Striga asiatica HOM05D003597 ORTHO05D004420 2.1e-07 60.8 55 58.2
TAR636G1827 Trochodendron aralioides HOM05D000921 ORTHO05D002852 2.1e-07 60.8 74 51.4
Thhalv10018012m.g Eutrema salsugineum HOM05D003597 ORTHO05D004420 2.8e-07 60.5 55 58.2
Atru.chr5.339 Acer truncatum HOM05D000921 ORTHO05D002852 3.6e-07 60.1 71 50.7
Lalb_Chr11g0065691 Lupinus albus HOM05D003597 ORTHO05D004420 3.6e-07 60.1 59 52.5
MBI04_g43159_MAGBIO Magnolia biondii HOM05D000921 ORTHO05D002852 3.6e-07 60.1 74 48.6
A07p43090 Brassica napus HOM05D003597 ORTHO05D004420 4.7e-07 59.7 55 60.0
AUR62023609 Chenopodium quinoa HOM05D003597 ORTHO05D004420 4.7e-07 59.7 55 54.5
Gohir.A08G031900 Gossypium hirsutum HOM05D000921 ORTHO05D002852 4.7e-07 59.7 71 50.7
Gorai.004G041500 Gossypium raimondii HOM05D000921 ORTHO05D002852 4.7e-07 59.7 71 50.7
Oeu029683.1 Olea europaea HOM05D000921 ORTHO05D002852 4.7e-07 59.7 71 47.9
BcaB03g15920 Brassica carinata HOM05D003597 ORTHO05D004420 6.2e-07 59.3 55 58.2
Carub.0002s2470 Capsella rubella HOM05D003597 ORTHO05D004420 6.2e-07 59.3 55 60.0
FvH4_7g12350 Fragaria vesca HOM05D000921 ORTHO05D002852 6.2e-07 59.3 72 48.6
FAN06G2098 Fragaria x ananassa HOM05D000921 ORTHO05D002852 6.2e-07 59.3 72 48.6
SGA_v2.0_scaffold303G47875 Striga asiatica HOM05D000921 ORTHO05D002852 6.2e-07 59.3 62 58.1
GSVIVG01027547001 Vitis vinifera HOM05D000921 ORTHO05D002852 6.2e-07 59.3 63 57.1
Dinv43732 Davidia involucrata HOM05D000921 ORTHO05D002852 8.1e-07 58.9 61 57.4
Migut.C01191 Erythranthe guttata HOM05D003597 ORTHO05D004420 8.1e-07 58.9 55 58.2
MD02G1199600 Malus domestica HOM05D000921 ORTHO05D002852 8.1e-07 58.9 71 52.1
Nn1g01159 Nelumbo nucifera HOM05D000921 ORTHO05D002852 8.1e-07 58.9 63 55.6
Nitab4.5_0000051g0110 Nicotiana tabacum HOM05D003597 ORTHO05D004420 8.1e-07 58.9 56 55.4
Nitab4.5_0002496g0040 Nicotiana tabacum HOM05D003597 ORTHO05D004420 8.1e-07 58.9 56 55.4
QL08p051741 Quercus lobata HOM05D000921 ORTHO05D002852 8.1e-07 58.9 63 55.6
Solyc11g013530.3 Solanum lycopersicum HOM05D003597 ORTHO05D004420 8.1e-07 58.9 56 55.4
Sopen11g008560 Solanum pennellii HOM05D003597 ORTHO05D004420 8.1e-07 58.9 56 55.4
AUR62004693 Chenopodium quinoa HOM05D003597 ORTHO05D004420 1.1e-06 58.5 55 52.7
LjContig00136g0027596 Lotus japonicus HOM05D000921 ORTHO05D002852 1.1e-06 58.5 71 50.7
Nn6g34350 Nelumbo nucifera HOM05D000921 ORTHO05D002852 1.1e-06 58.5 70 52.9
THA.LOC104813639 Tarenaya hassleriana HOM05D003597 ORTHO05D004420 1.1e-06 58.5 55 60.0
Thecc.01G372900 Theobroma cacao HOM05D000921 ORTHO05D002852 1.1e-06 58.5 65 53.8
unitig_22.g5373 Utricularia gibba HOM05D000921 ORTHO05D002852 1.1e-06 58.5 71 47.9
AL2G38040 Arabidopsis lyrata HOM05D003597 ORTHO05D004420 1.4e-06 58.2 55 58.2
CSS0003914 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D002852 1.4e-06 58.2 62 54.8
Cc02_g36420 Coffea canephora HOM05D000921 ORTHO05D002852 1.4e-06 58.2 71 49.3
COL.COLO4_12586 Corchorus olitorius HOM05D000921 ORTHO05D002852 1.4e-06 58.2 64 56.2
CsaV3_3G009490 Cucumis sativus L. HOM05D000921 ORTHO05D002852 1.4e-06 58.2 71 52.1
Lalb_Chr17g0344031 Lupinus albus HOM05D003597 ORTHO05D004420 1.4e-06 58.2 59 50.8
SalBow7G0935 Salvia bowleyana HOM05D003597 ORTHO05D004420 1.4e-06 58.2 55 54.5
SalBow7G4807 Salvia bowleyana HOM05D003597 ORTHO05D004420 1.4e-06 58.2 55 54.5
AT1G77800 Arabidopsis thaliana HOM05D003597 ORTHO05D004420 1.8e-06 57.8 55 58.2
DCAR_014282 Daucus carota HOM05D003597 ORTHO05D004420 1.8e-06 57.8 55 58.2
Gohir.D08G042932 Gossypium hirsutum HOM05D000921 ORTHO05D002852 1.8e-06 57.8 71 49.3
Medtr7g075660 Medicago truncatula HOM05D000921 ORTHO05D002852 1.8e-06 57.8 71 50.7
Prupe.2G149000 Prunus persica HOM05D000921 ORTHO05D002852 1.8e-06 57.8 71 49.3
Ciclev10018468m.g Citrus clementina HOM05D000921 ORTHO05D002852 2.4e-06 57.4 71 49.3
FAN01G1835 Fragaria x ananassa HOM05D000921 ORTHO05D002852 2.4e-06 57.4 72 47.2
FAN03G0226 Fragaria x ananassa HOM05D000921 ORTHO05D002852 2.4e-06 57.4 72 47.2
FAN10G3046 Fragaria x ananassa HOM05D000921 ORTHO05D002852 2.4e-06 57.4 72 47.2
FAN10G3969 Fragaria x ananassa HOM05D000921 ORTHO05D002852 2.4e-06 57.4 72 47.2
Medtr8g035750 Medicago truncatula HOM05D000921 ORTHO05D002852 2.4e-06 57.4 71 50.7
Potri.002G150000 Populus trichocarpa HOM05D000921 ORTHO05D002852 2.4e-06 57.4 71 49.3
VMungo1383G3171 Vigna mungo HOM05D000921 ORTHO05D002852 2.4e-06 57.4 71 49.3
Ah.05g172620 Amaranthus hybridus HOM05D003597 ORTHO05D004420 3.1e-06 57.0 55 54.5
BcaC08g47623 Brassica carinata HOM05D003597 ORTHO05D004420 3.1e-06 57.0 55 56.4
C06p51740 Brassica napus HOM05D003597 ORTHO05D004420 3.1e-06 57.0 55 56.4
BolC6t40196H Brassica oleracea HOM05D003597 ORTHO05D004420 3.1e-06 57.0 55 56.4
FAN06G4917 Fragaria x ananassa HOM05D000921 ORTHO05D002852 3.1e-06 57.0 72 47.2
Glyma.09G267100 Glycine max HOM05D000921 ORTHO05D002852 3.1e-06 57.0 71 47.9
Gohir.A11G082900 Gossypium hirsutum HOM05D000921 ORTHO05D002852 3.1e-06 57.0 74 48.6
Gohir.D11G087000 Gossypium hirsutum HOM05D000921 ORTHO05D002852 3.1e-06 57.0 74 48.6
Gorai.007G092900 Gossypium raimondii HOM05D000921 ORTHO05D002852 3.1e-06 57.0 74 48.6
Lj7C526G8 Lonicera japonica HOM05D000921 ORTHO05D002852 3.1e-06 57.0 73 47.9
Psat3g104040 Pisum sativum HOM05D000921 ORTHO05D002852 3.1e-06 57.0 71 50.7
TWI14G1087 Tripterygium wilfordii HOM05D000921 ORTHO05D002852 3.1e-06 57.0 62 54.8
Ca_07837_v3 Cicer arietinum L. HOM05D000921 ORTHO05D002852 4.0e-06 56.6 71 50.7
Glyma.18G223300 Glycine max HOM05D000921 ORTHO05D002852 4.0e-06 56.6 71 46.5
Oeu030027.4 Olea europaea HOM05D003597 ORTHO05D004420 4.0e-06 56.6 56 57.1
ATR0757G054 Amborella trichopoda HOM05D000921 ORTHO05D002852 5.2e-06 56.2 71 47.9
ClCG05G002030 Citrullus lanatus HOM05D000921 ORTHO05D002852 5.2e-06 56.2 61 57.4
EL10Ac1g00040 Beta vulgaris HOM05D003597 ORTHO05D004420 6.8e-06 55.8 55 50.9
CANSAT56G4522 Cannabis sativa HOM05D000921 ORTHO05D002852 6.8e-06 55.8 61 54.1
Cpa.g.sc18.151 Carica papaya HOM05D000921 ORTHO05D002852 6.8e-06 55.8 71 47.9
Phvul.008G074600 Phaseolus vulgaris HOM05D000921 ORTHO05D002852 6.8e-06 55.8 71 47.9
arahy.Tifrunner.gnm1.ann1.4FT79Q Arachis hypogaea HOM05D000921 ORTHO05D002852 8.9e-06 55.5 56 58.9
Cc00_g02330 Coffea canephora HOM05D003597 ORTHO05D004420 8.9e-06 55.5 55 49.1
MELO3C006169.2 Cucumis melo HOM05D000921 ORTHO05D002852 8.9e-06 55.5 61 57.4
Peaxi162Scf00416g00310 Petunia axillaris HOM05D000921 ORTHO05D002852 8.9e-06 55.5 62 54.8
vmacro12529 Vaccinium macrocarpon HOM05D003597 ORTHO05D004420 8.9e-06 55.5 64 51.6


User provided reference genes

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