Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 1.5e-72 276.2 151 100.0
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 1.0e-31 140.6 71 100.0
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 4.6e-29 131.7 71 93.0
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 4.6e-29 131.7 71 93.0
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 4.6e-29 131.7 71 91.5
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 7.9e-29 131.0 71 91.5
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 7.9e-29 131.0 71 91.5
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 7.9e-29 131.0 71 91.5
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 1.0e-28 130.6 71 90.1
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 1.0e-28 130.6 71 91.5
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 1.0e-28 130.6 71 91.5
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 1.8e-28 129.8 71 90.1
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 1.8e-28 129.8 71 90.1
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 1.8e-28 129.8 71 90.1
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 1.8e-28 129.8 71 90.1
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 1.8e-28 129.8 71 90.1
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.8e-28 129.8 71 90.1
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 2.3e-28 129.4 71 88.7
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 2.3e-28 129.4 71 88.7
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 2.3e-28 129.4 71 90.1
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 3.0e-28 129.0 71 90.1
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 3.0e-28 129.0 71 88.7
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 3.9e-28 128.6 71 88.7
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 6.7e-28 127.9 71 87.3
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 6.7e-28 127.9 71 87.3
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 6.7e-28 127.9 71 87.3
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 6.7e-28 127.9 71 87.3
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 8.8e-28 127.5 71 88.7
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 8.8e-28 127.5 71 88.7
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 1.1e-27 127.1 71 87.3
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 1.5e-27 126.7 71 87.3
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 1.5e-27 126.7 71 90.1
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 1.5e-27 126.7 71 88.7
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.5e-27 126.7 71 88.7
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 1.5e-27 126.7 71 88.7
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 2.0e-27 126.3 71 87.3
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 2.0e-27 126.3 71 88.7
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 3.3e-27 125.6 71 87.3
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 5.7e-27 124.8 71 84.5
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 5.7e-27 124.8 71 87.3
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 5.7e-27 124.8 71 87.3
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 5.7e-27 124.8 71 87.3
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 5.7e-27 124.8 71 87.3
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 7.4e-27 124.4 71 85.9
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 7.4e-27 124.4 71 87.3
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 7.4e-27 124.4 71 85.9
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 7.4e-27 124.4 71 88.7
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 7.4e-27 124.4 71 85.9
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 7.4e-27 124.4 71 85.9
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 9.7e-27 124.0 71 85.9
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 9.7e-27 124.0 71 85.9
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 9.7e-27 124.0 71 85.9
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 9.7e-27 124.0 71 85.9
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 9.7e-27 124.0 71 85.9
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 1.3e-26 123.6 71 84.5
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 1.3e-26 123.6 71 85.9
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.3e-26 123.6 71 85.9
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 1.7e-26 123.2 71 85.9
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 1.7e-26 123.2 71 85.9
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 2.2e-26 122.9 71 84.5
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 2.2e-26 122.9 71 84.5
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 2.2e-26 122.9 71 84.5
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 2.8e-26 122.5 70 85.7
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 2.8e-26 122.5 71 85.9
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 2.8e-26 122.5 71 84.5
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.8e-26 122.5 71 84.5
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.8e-26 122.5 71 84.5
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.8e-26 122.5 71 84.5
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.8e-26 122.5 71 84.5
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 2.8e-26 122.5 71 84.5
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 2.8e-26 122.5 71 84.5
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 3.7e-26 122.1 71 85.9
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 4.8e-26 121.7 71 83.1
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 4.8e-26 121.7 71 83.1
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 4.8e-26 121.7 71 83.1
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 4.8e-26 121.7 71 83.1
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 4.8e-26 121.7 71 83.1
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 6.3e-26 121.3 71 83.1
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 6.3e-26 121.3 71 83.1
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 6.3e-26 121.3 71 83.1
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 6.3e-26 121.3 71 83.1
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 6.3e-26 121.3 71 81.7
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 8.2e-26 120.9 71 83.1
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 8.2e-26 120.9 71 83.1
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 8.2e-26 120.9 71 83.1
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 8.2e-26 120.9 71 83.1
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 8.2e-26 120.9 71 83.1
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 8.2e-26 120.9 71 85.9
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 1.1e-25 120.6 71 81.7
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 1.1e-25 120.6 71 81.7
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 1.4e-25 120.2 71 81.7
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 1.4e-25 120.2 71 81.7
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 1.4e-25 120.2 71 81.7
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 1.4e-25 120.2 71 81.7
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 1.4e-25 120.2 71 83.1
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 1.4e-25 120.2 71 83.1
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 1.4e-25 120.2 71 83.1
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 1.4e-25 120.2 71 83.1
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 1.8e-25 119.8 71 83.1
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 3.1e-25 119.0 71 83.1
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 3.1e-25 119.0 71 81.7
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 3.1e-25 119.0 71 81.7
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 3.1e-25 119.0 71 80.3
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 4.1e-25 118.6 71 80.3
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 4.1e-25 118.6 71 80.3
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 4.1e-25 118.6 71 81.7
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 4.1e-25 118.6 71 80.3
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 5.3e-25 118.2 70 81.4
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 6.9e-25 117.9 71 80.3
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 6.9e-25 117.9 71 80.3
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 6.9e-25 117.9 71 80.3
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 6.9e-25 117.9 71 78.9
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 9.1e-25 117.5 71 80.3
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 9.1e-25 117.5 69 87.0
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 9.1e-25 117.5 71 84.5
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 1.5e-24 116.7 71 78.9
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 1.5e-24 116.7 71 78.9
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 2.0e-24 116.3 72 81.9
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 4.5e-24 115.2 71 81.7
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 1.3e-23 113.6 68 82.4
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 2.1e-21 106.3 58 89.7
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 2.7e-21 105.9 67 79.1
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-20 103.6 70 72.9
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 1.2e-16 90.5 55 78.2
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 1.8e-12 76.6 63 54.0
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 1.5e-11 73.6 48 93.8
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 2.6e-11 72.8 40 82.5
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 3.3e-11 72.4 35 94.3
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 8.2e-10 67.8 69 55.1
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 3.1e-09 65.9 71 47.9
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 3.2e-06 55.8 76 48.7
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 5.5e-06 55.1 68 36.8


User provided reference genes

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